>input_sequence_87080
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------------ATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATTTGCATGCTCATCATCCTCGTGCTCATCGCCGTCGG
CCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTCCAGCATCCACCTCCAGGACGGCGCCTCCT
ACCGCGCCTACGGCCACCTCAACCTCGCGCCCCCGCCCGCCTACTACTAG------------------------------
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>chr5A_1_TraesCS5A01G256200
TATAGAACCATGTCTGACTATAGGCCTTACTGGTATTGACCTTTGCTAGCGCGATCCGTCTAGCTTCGGCTGGCGGCGCA
TCTTCCTCATCAAAAACCACATCGTCAAGGTCCTCTTTCAATCCCAGCTCCTCCATCGTCCGTTCCACATCATTGATCCC
TGAGGAGCCCGAGGCTCCCTCAGCCGCCATCGATATCTCTTACCCGAAGTTCAGTCAGATCGGGTGTTTTCAAGGTGGAA
CCCTAGCTTTCCGCCACCAGCCAGAAGACGGCCTGGGCGAGGCACGATCGCAAGACCACTCCTCGTTCCCGGCGATACAA
CTGGTGGGGGATCGGCGGTAGGGAAGCAGCGCTACTCGACGGCGGCGGCAATCGCCCCGGGAGAAAGATAAAACCCTGAC
GTGAGGGAAAAGTAGGATCCTGGTTTCCGATTGTACCGATTTGTGTTCGATGTGCTGCATTTTTGTTCCCTGTGCAGCGT
GTAGCGGGCCGGCCCACCAGGGGGTCGGCAGCGACCAGAGCTCCCGGGCCCTGCTACCGGGCACCTGGCTGGATCCCGTG
GGCGCAAGGCCGACGATCCTTGGACACGGTGGGACCAAAGCCCGAAGCCGAAACGACCTCCCACCGAACCAACCAACCAG
GTACCCTCGTAAAAACCGTGCCGTT-CCCGTCTCCGGAACCGCAACGGTGTCCACGTCCAGCACCA------------CC
GCCACCACCTTGCCCTTGAAAAGTGGCACCGGACCGAAGCCAGCCACGACCGCCAGCCAAACCACGG----------ACG
TGACCGCACCGCACCGCGACTCGACACCGAGCCAACCCGATTCCCCCAACCCAACCAGCACA-----GGAGCGGAGCGGT
CTCTATAAACAGCCGCGCGGCCGGTCACGCACGCCTCCCAAAAGCCCCACCCCCCACCCCCACGGCCCCAGCAAAAGCGC
CTCGCCTTTTCCT--------------------TCCCCTACCTCGGAGCGGAGC--CAGGAGCCGAAGCCGGAGGAGGA-
-AGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATTTGCATGCTCATCATCCTCGTGCTCATCGCCGTCGG
CCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTCCAGCATCCACCTCCAGGACGGCGCCTCCT
ACCGCGCCTACGGCCACCTCAACCTCGCGCCCCCGCCCGCCTACTACTAGA-------------GCCCAGAGGGCTCCCT
CCCTCCCCCGGGATCTACTCTGCCAGCAGCACGGCATGGGATGGATCCCCTCCGGCCCCGGCGGTCCGCCGCGCCCTGGG
GATCGATCCCCCGCACAGCGGCATGCCGTCCGCGAAGAGGAGATTCCGGGGCCGGTCGAT--------------------
-------------------------------------------TAGCAGAGATTATATTTACAGATTGATGATGATAATT
ACC-------------TCCCTTTGCGTTTTGTTAATTACCGCTCATTGGTTGAAAAAATTACTGCTCGTTAGTTTAGTGC
TCCATCATGCCTCCGTTTGTGCCTGTTTATTA---CTGCTCATTAGTTTAGCGCTCCAT-CATCATGGAGGCACATGGAT
GGTCGGGATAGTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCCTTGGCAGTTGGCACTTGGCAGCATGTGCTTTTC
GGTTTGGCTTGACGCACGAACTGCACTACGCAACGCAAGGAGTCAGACGCTTTCTGAGGAAGCAGAGTGACGTCCA----
----CGCTAATCCGTTCCTGTGTTGTTGTTGTGTACTCCACGATACTTGTCG--------TGGGTCATGGTCAGTCAGCA
GATTTGGTTGCCCGTCCACTGAAAAGGTT---GTAGTGGTTCCGTTGCCTTGCACGTTCGACCTGCTGAGTTGAAACGGC
GATGCAGTA---ATGTGAGCCACTCATAATCACTCTACTAACTGCCCCGTAATAAACCCATGACGGCAAAAGCCTGATAG
ATGCGTGGTATGTGGTTTAGCACGCACCTGCCAAGCCCTCCCCAGCCATCCGATTTGTTCTGTGATTTGCAAAGTAGTTG
CATCCAGCGCGAGGGAATAGTAACTTTTAATAGTTGAAACTTGCGGTTTTTTCGGTCCCTCATACAAGTTTTAGAGTTGA
AAATTCAAGCGATTGTTTTATACAAAATTTGTGATTTTGTCGATCACTCACACTAAGTTTAAAATGTTAAAACTCAACGG
ATTTTTTTTAAAGAACTCCTCCAAATGTATTCAAAATGGATCTTG
>chr5B_635
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--------------------------------------------------------------------------AACCAG
ATACCATCGTAAAA-CCGTGCCGT------TCTCCGGAACCGCAACGGTGTCCACGTCCAGCACCA------------CC
ACCGCCACCTCGCCCTTGAAAAGTGGCACCGGACCGG----AGCCACGACCGGCAGCCAAACCACGG----------AC-
---------CGCACCGCAACTCGACACCGAACCAACCCGATTCCCCCCACCCAACGAGTAGCGGAGCGGAGCGG----GC
CTCTATAAACAGCCGCGCGGCCGGTCACGCACGCCTCCCAGAG------CCCCCACGGA------CACCAGCAAAAGCGC
CTCGCCTTTTCCGTTACCTTTTCTTCCTTGTCCTCCCCTACCTCGGAGCGAAAGAGCAGGAGCCGGAGGCGGCGGCGGCC
GAGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATCTGCATGCTCATCATCCTCGTCCTCATCGCCGTCGG
CCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTCCAACATCCACCTCCAGGACGGCGCCTCCT
ACCGCGCCTACGGCCACCTCAACCTCGCGCCGCCGCCATCCTACTACTAGA-------------GC---------TCCCT
CCCTCCCCCGAGATCTACTCTGTCAGCAGCACGGCATGCATTGGGCTCTGTCT----CCCGTGTTCCGTCGCGCGGTGGG
GATCGATCCCCTGCACAGCGTCATGCCGTCTGCGAAGAAGAGATTCCGGGGCCGGTCGATTTACATTGATTTCCTGCTGA
ATTAATTCCCGTTTGTTGCTTCGCTCCGATGATGTCGATATTTTAGCAGAGATTATATTTACAGATTGATGATGATAATT
ACCGTTACTATGTCCCTCCGTTTGCGTTTTGTTAATTACTGCT--------------------GCTCATTAGTTTAGTGC
TCCATCATGCCTTCGTTTGTGCCTGTTTATTACTGCTGCTCATTAGTTTAGCAAATACCCCATCATGGAGGCACATGGAT
GGTCGGG---GTTATCCCGCGAATTGCGATAATCTCGGCGTCTGGCC-------TTGGCACTTGGCAGCATGTGCTTTTC
GGTTTGGCTTGACGCACGAACTGCACT-----ACGCAAGGAGTCAAACGCTTTCGGGGGAAGCAGAGTGACGTCCA----
----CGCTCCTG-----------TGTTGTTGTGCACTCTACGATACGTACTCTGACATTCTGGGTCATGGCCGGTCAGCA
GATTTGGTTGCCCGTCCACCCAAAAGGTAGTAGTAGTGGTTCCGTTGCCTTGCACGTTCGACTTTCCGAGTTGAAACGGC
GATGCAGTGATGATGTGAACCACTCATAATCACTCTA---ACTGCCCCGTAATGAACCCATGACGGCAAAAGCCTGATAG
ATGCATGATATGTGGTTCAGAAATTGCG---CAGGGCCTCCCAAGCCACACGACT-GTCTTGTGATTCGCAAAGTAGTTG
GATTTCACACGAGAGAATAGTAATTTTTAATCTCTGAAACTC-----------------------------------TGA
AATTTCAAGCAATTTTTTTATACAAAAGTTGGGATTTTGTCGATCACTCATACTAAGTTTAAAAGGTTTAAACTTAACAG
ATTTTTTAAGTAAAACTCCTCCAAATGTATTCAAAATGGATCTTG
>chr5D_653
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------------AAACCGTGCCGCTCCCCGTCTCCGGAACCGCAACGGGGTCCACGTCCAGCACCAGCACCAGCACCACC
ACCACCACCTCGCCCATGAAAAGTGGCACCGGACCGAAGCC----ACGACCGCCTGCCAAACCACGGACGTGACCGCAC-
---------CGCACCGCAACTCGACACCGAACCAACCCGATTCCCCCCACCCAACGAGCAGCGGAGCGGAGCGGAGCGGC
CTCTATAAACAGCCGCGCGGCCGGTCACGCACGCCTCCCAAAAGCCCCACCCCCACGGA------CCCCAGCAAAAGCGC
CTCGCCTTTTCCT--------------------TCCCCTACCTCGGAGCGGAGC--CAAGAGCCGGAGGCGGCGGCC-A-
-AGATCAGCAAGATGTGCTGCTGCCCGAGCAAGGCGTGCTGCATCTGCATGCTCATCATCCTCGTCCTCATCGCCGTCGG
CCTCGTCTTCGGCTTCGGCGTCTACACCCGCGGCTTCCACAAGCTCTCCTCCAGCATCCACCTCCAGGACGGCGCCTCCT
ACCGCGCCTACGGCCACCTCAACCTCGCGCCGCCGCCCGCCTACTACTAGAGAGAGCCCACAGGGC---------TCCCT
CCCTCCCCCGGGATCTACTCCGCCAGCAGCACGGCATGGATTGGGCTTCGTCT----CCGGCGTTCCGTCGCGCGGTGGG
GATCGATCCCCTGCACAGCGTCATGCCGTCTGCGAAGAAGAGATTCCGGGGCCGGTCGATTTGCATTGATTTTCTGCTGA
ATTAATTCCTTTC-GTTGCTTCGCTCCGATGATGTCGATATTTTAGCAGAGAGTATATTTACAGATTGATGATGACAATT
ACCGTTACTGTATCCCTCCGTTTGCGTTTTGTTAATTACTGCT--------------------GCTCATTAGTTTAGTGC
TTCATCACGGCTCCGTTTGTGCCTGTGGATTA---CTGCTCATTAGTTTAGCAAATACTCCATCACGGAGGCACATGGAT
GGTCGGG---GTTATCCGGCGAGTTGCGATAATCTCGGCGTCTGGCC-------TTGGCACTTGGCAGCATGTGCTTTTC
GGTTTGGCTTGACGCACGAACTGCACTGCACTACGCAAGGAGTCAAACGCTTTCGGGGGAAACGGAGTGACGTCCACGCT
AGTCCGTTCCTG-----------TGTTGTTGTGTACTCTACGATACTTCTCG--------TGGGTCATGGTCAGTCAGCA
TATTTGGTTGCCCGTCCACTGAAAAGGTT---GTAGTGGTTCCGTTGCCTTGCACGTTCGACCTGCTGAGTTGAAACGGC
GATGCCGTCATGTGAACTACTAATCACGTTCG------------------------------------------------
-------------------------ACCTACCAAGCCCTCCCCAGCCATCCGATT-GTTTTGTGATTCGCAATGCAGTTG
GATCCGACGCGAGGGAATAGTAACTTCTAATCGTTGAAACTTGCGAATTTTTCGGTCGCTCGGACAAGATTCAGAGTTGA
GAATTCAAGCGATTTTTTTATGCAAAAGTTGTGATTTTGTCTATCACTCATACCAAGTTTAAAAGGTTGAAACTCAACG-
--TTTTTTTAAAGAACTCCTCCAAATGTATTCAAAATGGATCTTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
S----S--------------------------------------------------------------------------
S---------S--------------------------------------------------------------------S
SSSSSSSSS--------S------------S----------------S-------S----SS-----------------S
------------------------------------------------------SSSSSSSSSSS---------------
-----------------------------------------------------------------S--S---S--S----
--------------------------------------------S--------------------S--------------
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-------------------------------S----------------------------------SSSSSSSSS-----
---------------------------------------SS---SSS--S--SSSSS------S----S-----SS----
-----------S--------S---------S-------S-----------------------------------------
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-------------------S-------------------S---SSSSSSSSSSSSSSSSSSSS----S------------
----------------------------------------------------SSSSSS----------------------
-------SSS-------------------------------------SSSSSSS--------------------------
---------------------------S-S-S-------------S--------S-S-----------------------
--------SS-SSSSSSSSSSSS---------------S---------S-------------------------------
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--------S---------S------------------SSS-------------S--------------------------
----S--S---------S--S-SSS----S-------------------------S---S-------S------------
S----SS------------------------S-------------SS----------S---SS-----S--S--------
--------------S------------S----------------------S-------------S---S-----------
---------------------------------------------
>forward_310
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--------------------------------------------------CAAGACCACTCCTCGTTCCC----------
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>reverse_2054
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-----------------------------------------------------AAACCCATGACGGCAAAAGC-------
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