>input_sequence_87072
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-----------------------------------------ATGGAGAAGGGGAAGGCCCCAGCGGAGGCAGCGGAGTCG
GCCGCGGCGTGTGCGGCCCGGCTGGCGCGTGCGTGGAGCACTTGGGCCATGAAGAACGCGAAGGTGGTCGCGCACTACGG
CTTCATCCCCCTCGTCATCCTCGTCGGCATGAGGTCCGAGCCCAAGCCCAGCCTCGCGCAGCTCCTCTCCCCCGTGTAG-
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>chr3B_1_TraesCS3B01G315000
TGGAAGCTCGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTGGAAGCTCGAACAATTTTTGAA
-------------------TGTTGAGAACAATTTTTGAAATGGAGAACAAATTTGGAAGCGCGGACAATTTTTGAAAGCA
CGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGA------------------ACAAATTTAGAAGCGCGGAC
AATTTTTTAAAGCACAAACAATTTTTTAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCGCGGACAATT
TTTT-AAAGCATGAACAATTT-TG-AATGTTGAGAATAAATTTTGAAATGGAGAACAAATTTAGAAGCACGAATTTGAAA
TGGGAAGATTTTTTGAAACTCCCAAACATAATTTGAAATGTGAACAAAAAGAAAACAAAAAGAAAAGAAAAAGGAATTGA
AAGATGAAATAAAGAAACAGAAAAACGAAGAAAGAAAAGAAAA-----------------------------AAACAGAA
AAAACCAGTGAAAACCCGGTTCAAGAACCTTCTAGAAGGTTCCCAAAACCGTTCAGGAACCTTCCAGAAGGTTCCCAAAA
ACGGAAGCCGCAGCGCCAGCGCTATCTCCTAACTGGGCCGGCCCATCTTGATCGCTATCGCGAGCTCTCTGTGCGAAGCC
TCGACAAGTCGACGCAACGTGCGTCCAATAGGATTTTCCCAAAAACAACCCAAAAAGGCCCAAAAAATTAGCCTAAGTAG
GCGGGCTGGTGGGCTAAAAGTGTGAGTGTTGTCGGCCCATTTCCTCGCTGTGCCA-----GGGCCCGAAGACTGGGAACA
CAGGCCGGGCCGTGCCAGGTGCGTTAAGCCCTGGGCCGGGCCATGTGGCCACCAGATCCCCA-----TCCTGAACCTCCT
CTCCTCTGGTTCTCCTTCC--ATCATCACAACTCACAAAGCTGCAATATCCAAAAAAAAAGCTGCAATATCCAAAATTCC
AAATCATTCTTCTCTCGGCGACACGATTGGCAGAGGCGACCATGGAGAAGGGGAAGGCCCCAGCGGAGGCAGCGGAGTCG
GCCGCGGCGTGTGCGGCCCGGCTGGCGCGTGCGTGGAGCACTTGGGCCATGAAGAACGCGAAGGTGGTCGCGCACTACGG
CTTCATCCCCCTCGTCATCCTCGTCGGCATGAGGTCCGAGCCCAAGCCCAGCCTCGCGCAGCTCCTCTCCCCCGTGTAGC
TCTATTCCGCGGCCCGATCCGCACGGCTGTGCGCGTATTGAATTGATCAATATTTGTATTTCTCCCC-AATAATTTCGAT
TACTCTTTGGATTGCTCTGATTTGGGGTCTCCTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTGTTTGTGCTTTAAAAAATTGTCCG
CGCTTCTAAATTTGTTCTCCATTTCAAAATTTGTTCTCAACATTCAAAAATTGTTCGTGCTTTCAAAAATTGTCCGCGCT
TCCAAATTTGTTCTCCATTTCAAAAATTGTTCTCAACATT
>chr7B_1
TGGAAGCTCGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTGGAAGCTCGAACAATTTTTGAA
AGCACGAACAATTTTTGAATGTTGAGAACAATTTTTGAAATGGAGAACAAATTTGGAAGCGCGGACAATTTTTGAAAGCA
CGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGA------------------ACAAATTTAGAAGCGCGGAC
AATTTTTTAAAGCACGAACAATTTTTTAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCGCGGACAATT
TTTT-AAAGCACGAATAATTTTTG-AATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCACGAATTTGAAA
TGGGAAGATTTTTTGAAACTCCCAAACATAATTTGAAATGTGAACAAAAAGAAAACAAAAAGAGAAGAAAAAG-AATTGA
AAGATGAAATAAAGAAACAGAAAAACGAAGAAAGAAAAGAAAAAACAACAGAAAAAACAACAAAGAAAAAGCAAACAGAA
AAAACCAGTGAAAACCCGGTTCAAGAACCTTCTAGAAGGTTCCCAAAACCGTTCAGGAACCCTCCAGAAGGTTCCCAAAA
CCGGAAGCCGCAGCGCCAGCGCTATCTCCTAACTGGGCCGGCCCATCTTGATCGCTATCGCTAGCTCTCTGTGCGAAGCC
TCGACAAGTCGACGCAACGAGCGTCCAATAGGATTTTCCC----------------------------------------
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>chr2B_1
TGGAAGCTCGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTGGAAGCTCGAACAATTTTTGAA
AGCACGAACAATTTTTGAATGTTGAGAACAATTTTTGAAATGGAGAACAAATTTGGAAGCGCGGACAATTTTTGAAAGCA
CGAACAATTTTTGAATGCTGAGAACAAATTTTGAAATGGAGA------------------ACAAATTTAGAAGCGCGGAC
ACTTTTTTAAAGCACGAACAATTTTTTAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCGCGGACAATT
TTTT-AAAGCACGAACAATTT-TTAAATGTTGAGAACAAATTTTGAAATAGAGAACAAATTTAGAAGCACGAATTTGAAA
TGGGAAGATTTTTTGAAACTCCCAAACATAATTTGAAATGTGAACAAAAAGAAAACAAAAAGAGAAGAAAAAGGAATTGA
AAGATGAAATAAAGAAACAGAAAAACGAAGAAAGAAAA-----GA-AA------------------------AAAAAGAA
AAAAC---------------------------------------------------------------------------
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>chr5B_1
TGAAAGCATGAACAATTTTTGAATCTTGAGAACATATTTTGAAATGGAGAACAAATTTGGAAGCTCGAACAATTTTTGAA
AGCATGAACAATTTTTGAATCTTGAGAACAAATTTTGAAATGGAGAACAAATTTGGAAGCACGAACAATTTTTGAAAACA
CAAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGA------------------ACAA----------------
--TT-TTTTAAGCGCGAACATTTTTTGAATGTTGAGAACAAATTTTGAAATGGAGAACAGATTTAGAAGCGCGGACAATT
TTTT-AAAGCACGAACAATTTTGG-AATGTTGAGAACAAATTTTGAAACGGAGAACAAATTTGGAAGCGCGAATT-GAAA
TGGAAAGATTTTTTGAAACTCCCAAACATAATTTGAAATGTGAA-----------CAAAAAGAGAAGAAAAAGGAATTGA
AAAATGAAATAAAGAAACAGAAAAATGAAGAAAGAAAA-----AA-AACAGGAAAAACAACAAAGAAAAAGCAAACAGAA
AAAACCAGTGAAAACCCGGTTCAAGAACCTTCTAGAAGGTTCCCAAAACCGTTCAGGAACCCTCCAGAAGGTTCCCAAAA
CCGGAAGCTGCAGCGCCAACGCTATCTCCTAACTGAGCCGGCCCATCTTGATCGCTATCGCTAGCTCTCTGTGCGAAGCC
TCGAC---------------------------------------------------------------------------
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>chr1B_5
----AGCACGAACAATTTTTGAATGTTGAGAACAAATTTTGATATGGAGAACAATTTTGGAAGCTCGAACAATTTTTGAA
AGCACGAACAATTTTTGAATCTTGAGAACAAATTTTGAAATGGAGAACAAATTTGGAAGC-------------------A
CGAACAAATTTTGAATGTTGAGAACAAATTTTGAAATGGAGA------------------ACAA----------------
--TTTTTTTAAGCGCGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGAAGAACAAATTTAGAAGCGCGGACAATT
TTTTAAAAGCACGAACAATTTTTG-AATGTTGAAATTTTTTTTTGAAATGGAGAACAAATTTGGAAGCGCGAATTTGAAA
TGGGAAGATTTTTTGAAACTCCCAAACATAATTTGAAATGTGAACAAAAAGAAGACAAAAAGAGAAGAAAAAGGAATTGA
AAAATGAAATAAAGAAACAGAAAAACGAAGAAAGAGAAAGAAAAA-AACAGGAAAAACAACAAAGAAAAAGCAAACAGAA
AAAACCAGTGAAAACCCGGTTCAAGAACCTTCTAGAAGGTTCCCAAAACCATTCAAGAACCCTCCAGAAGGTTCCCAAAA
CCGGAAGCTGCAGCCCCAGCGCTATCTCCTAACTGGGCCGGCCCATCTTGATCGCTATCGCTAGCTCTCTGTGCGAAGCC
TCGACAAGTCGACGCAGCGAGCGTCCAATAGGATTTTCC-----------------------------------------
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>chr2B_10
---------GAACAAT--------------------TTTTGAAATGGAGAACAAATTTGGAAGCACGGACAATTTTTGAA
AGCACGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCGCGGACAATTTTTTAAAGCA
CAAACAATTTTTTAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCGCGGACAA----------------
--TTTTTTAAAGCACGAACAATTTTTGAATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGTGCGGACAATT
TTTT-AAAGCACGAGCAATTT-TTGGATGTTGAGAACAAATTTTGAAATGGAGAACAAATTTAGAAGCACGAATTTGAAA
TGGGAAGATTTTTTGAAACTCCCAAACATAATTTGAAATGTGAACAAAAAGAAAACAAAAAGAGAAGAAAAAGGAATTGA
AAGATGAAATAAAGAAACAGAAAAACGAAGAAAGAAAAGAAAAAA-AACAGAAAAAACAACAAAGAAAAAGCAAACAGAA
AAAACCAGTGAAAACCCGGTTCAAGAACCTTCTAGAAGGTTCCCAAAACCGTTCAGGAACCCTCCAGAAGGTTCCCAAAA
CCGGAAGCCGCAGCGCCAGCGCTATCTCCTAACTGGGCCGTCCCATCTTGATCGCTATCGCTAGCTCTCTGTGCGAAGCC
TCGACAAGTCGATGCAACGAGCGTCCAATAGGATTTTCC-----------------------------------------
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>chr3A_693
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-----------------------------------------AAAACAGCCTAAATAGGCCCAAAAAG-TAGCCTAAGTAG
GCGGGCTGGTGGGCTAAAAGTGCGACTGTTGTCGGCCCATTTCCTCGTTGTGCCGTGCCTGGGCCCAAACACTGGGCACC
CGGGCCGGGCCGTGCCAGGTGAGTTAAGCCCTGGGCCGGGCCATGTGGCCACCAGATCCCCATCGCATCCTGAACCTCCT
CTCCTCTGGTTCTCCT--C--ATCATCACAACTCACAA----------------------GCTGCAATATCCAAAATTCC
AAATCATTCTTCTCTCGGCGACGCGATTGGCAGAGGCGGCCATGGAGAAGGGGAAGGCCCCAGCGGAGGCAGCGGAGTCG
GCGGCGGCGTGTGCGGCGCGGCTGGCGCGTGAGTGGAGCACTTGGGCGATGAAGAACGCGAAGGTGGTCGCGCACTACGG
CTTCATCCCCCTCGTCATCCTCGTCGGCATGAGGTCCGAGCCCAAGCCCAGCCTCGCGCAGCTCCTCTCCCCCGTGTAGC
TATTTTCCGCGGCCCGATCCGCACGGCTGTGCGCGTATTGAATTGATCAACATTCGTATTTCTCCCC-AATAATTTCGAT
TACTCTTTGGATTGCTCTGATTTGGGGTCTCCTTGAT-------------------------------------------
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>chr3D_693
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-----------------------------------------AAAACAGCCCAAATAGGCCCCAAAAAATAGCCTAAGTAT
GCGGGCTGGTGGGCTAAAAGTGCGAGTGTTGTCGGCCCATTTCCTCGTTGTGCCGTGCCTGGGC-------------ACG
CGGGCCGGGCCGTGCCGGGTGCGTTAAGCCCTGGGCCGGGCCATGGGGCCACCAGAT-CCCATCGCATCCTGAACCTCCT
CTCCTCTGGTTCTCCT--CCCATCATCACAACTCACAA----------------------GCTGCAATATCCAAAATTCC
TAATCATTCTTCTCTCGGCGACACGATTGGCAGAGGCGGCCATGGAGAAGGGGAAGGCCCCAGCGGAGGCAGCGGAGTCG
GCCGCGGCGTATGCGGCGCGGCTGGCGCGTGAGTGGAGCACTTGGGCGATGAAGAACACGAAGGTGGTCGCGCACTACGG
CTTCATCCCCCTCGTCATCCTCGTCGGCATGAGCTCCGAACCCAAGCCCAGCCTCGCCCAGCTCCTCTCCCCCGTTTAGC
CCCGTCCCCCGGCCCGATCCGCACGGTTGTGCTCGTATTGAATTGATCAATTTTTGTATTTCTCCCTGAATAATTTCGAT
TACCCTTTGAATTGCTCTGATTTTGGGTCGCCCTGAT-------------------------------------------
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>SNPs
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---------------S----------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------------------S----------------
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-------------------------------------------------------------S------------------
S------------------------------------------------------------S------------------
-------------------S--------------------S------S------S------------S------------
----------------------S------------------------S------S-----------S--S------S--S
-S------------------------------------------------------------------------------
----------------SS--------------------SSSSSSSSSSSSSSSSSSSSSS--------------------
--------------------------------------S-----------------------------------------
-----------------S-------------S---------------S--------------------------------
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---S----------------------------------------------------------------------------
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_823
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---GGCTGGTGGGCTAAAAGTGT---------------------------------------------------------
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>reverse_2232
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-----------------------------------------------------------------------GTCCGCGCT
TCCAAATTTGT-----------------------------
