>input_sequence_87068
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------------------------------------------------ATGCCGGTGGTTGCTCAGTGGGCGGCTGAGGG
TAGTATGTCTGTGGCTGCT---CGCTGGGCGGCTGAGGATGATATTCTTGTGGCTGCTCAGCGGGCGGCGGCGGTGACCC
CTTCCCCTTCCCCTTTGATTTTGATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGT
CGCCCATGA-----------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G519200
GTATTGCTGTATTGCATTTAATCGTACAAATTTCTCACACACCATTTATTTGCCAAAGTGCTAACAATTGTTTCACACCA
CTATGTTGAAAAGGAGACACTATCGAACAAGAATCTGCCAAAGTGCTAGGTTGTTTGACGGCACCATGTAGAAAAGTAGA
CATTATTGAACAAGAATAACGAGTTTATTTAATAAAAAGGGAAGGCATCGATTCTCTC--GTCTTTTCAGCCATGATCTG
ATGTGAATGGGAGAGCATCAATAGTTGGCGATGATTCATGCAAAGCCCCTCCCCCCCCCTACAAAAATGATTCTTGCATA
GCAGCTGCATACACGAATCATTGGTACAGTAATCAAGACACGCAAAACACATGCAACTTTGCCTAA------GCAGCACA
ATGGTTGTGGCACACGAAACAGTGAACAGATCACATTATGGTGCAAGCACCCGCTTGATCCTCCTCGCAGATAACCCGGT
AGCCGCTGTATCCGCCGCAGTACGGCGTGCGTGCGCCACCGTAGCAACCTGCTGGCGGCGGCAGCGCCACGGCGGCGGTG
TAGCCGTACGTCCTGCCGCAGTCTGAGCACCTGCAACTTCCGTAGTACCCCTGGTAGCATGACGCGCAGCACGTGCAGCG
GCACGGGCCCACAGGTCGCGCCGGCAGCGAGGGGATCTCCACCATCGGCGGCCCGTTCCACGAAGGCATCTCTCCCATCG
GGTGCCTCCTCTCCCTAGGGTTCTTGTGGCACTCCGGCCCTGCTTCTGGCACGAAATGGACCTGCATCTCCTTTGGCTTC
TCAAGCTCGGCCGGTCTCTCTTGCGGCCTCTCCTCCTCCCTGACCGCCTGCATGGTCGCTGACATCTCTCTGTCCGGAGG
GGGCTGCTGAGGGTGGTGGTATTCCGGTGGCTGCTCAGCGGGCGGCTGAGGGTGGTACGCAGGTTGCTGCTCGGTGGGCT
GCTGAGGGTGGTATTCCGGTGGCTGCTCAGTGGGTGGCTGATGGTGGTATGCCGGTGGTTGCTCAGTGGGCGGCTGAGGG
TAGTATGTCTGTGGCTGCT---CGCTGGGCGGCTGAGGATGATATTCTTGTGGCTGCTCAGCGGGCGGCGGCGGTGACCC
CTTCCCCTTCCCCTTTGATTTTGATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGT
CGCCCATGATTTGGACGCCCTTGATCACCTTGCCTCCTTTGCATCTGATCCTGCATGATAGCTTGTGTGGATCAAACGGC
CCGTCGATGATGACTGCGTTATTGTTGGTGTCGAAGGAGATCGTCCTAATCCTCTCTTGATCTGTACAAGTCATTTTCTT
GGAAGTTATAC--TAGCAAGTAAGAAATTTGTGTTCGTGATTGGTTTAGCAAGCTCATGTGAAGAGTTTCTTTGTGACTG
AGATGCATGAATGAACATATAGTAGTAAATGCAGTACATTCATATGTTCTACGCACCTTGAAGGCTGCAAAGAATCTTGC
GGATCTTTTTGTAGCACTGGTGGCAATCAAGGTCGACCCTTAAGATTATAGTGGAGATCTGTGTTGACAGAAGCA-CAGT
AAAGTAAATAGTTACTACCTCTGTTCGTTTTTATAAGACGTTTTAGACGTTAAGACACCGTTCAAAACAGTACAAAACAA
GCTGTCTGAAACGTCTTATAAAAACAAACGGACGGAGTACTAATGAAGCCTCAAAATCAGTGCATACTTTCCAATTTCAG
AGATGCTGAGCTTTTGTTCTTGGTTATCTTATGAATGAATGCTCATAATAGTTCTTTGGGACACAAAAACTGCAATTCCT
TCACTACATGATCAATAATAAGGGCATCTTTGGAACTCAGGTTTCTAAAAACATATGAATAGT-AAAAATGTATGGTTGA
GATGTCATGACCAACTTTGGTCCATGGGAAACCAAAATATGGGAATTACTTTGACTCATTTGATGCTAGTAATTCCATAG
---GAATATGAAGTGACAGAAGATGCCTGGGAGGCACAAATACAAATTTCCATGAGGTCTAACTACTATTTTTCACTAGG
TGTGGTTTATCCTCTTCTTAGAAATCCTGTGAAATTGTGGTGTAAGAAAGCAATCCATAGAAATTGATGGTCTGGTTTCT
TTTACCCAAATCACCCTAAAAACAAATTTCTGACCAACAGAAATCATGCAAAAATC
>chr2A_1
GTATTGTTGTATTGCATTTAACCGTATGAATTTCTCACACACCATTTATTTGCCAAAGTGCTAAAAATTGTTTCAAACCA
CTATGTTGAAAAGGAGACACTATCGAACAAGAATCTGCCAAAGTGCTAGGTTGTTTGACGGCACCATGTAGAAAAGTAGA
CATTATTGAACAAGAATAACGAGTTTATTTAATAAAAAGGGAAGGCATCGATTCTCTCTCGTCTTTTCAGAAATGATCTG
ATGTGAATGGGAGAGCATCG---GTTGGCGACGATTCATGCAAAGCCCCCCC-------TACAAAAATGATTCATGCATA
GCAGATGCATACACGAATCATTG-----GTAATCAAGACACGCAAAACACATGCAAATTTGCCTAA------GCAGCACA
ATGGTTGTGGCACACGAAACAGTGAACAGATCACATTATGATGCAAGCACCCGCTTGATCCTCCTCGCAGATAACCCGGT
AGCCGCTGTATCCGCCGCAGTACGGCGCGCGTGCGCCACCGTAGCAGCCGGCTGGCGGCGGCAGCGCCACGGCGGCGGTG
TAGCCGTACGTCCTGCCGCAGTCTGAGCACCTGCAACTTCCGTAGTACCCCTGGTAGCATGACGCGCAGCACGTGCAGCG
GCACGAGCCCACAGGTCGCGCCGGCAGCGAGGGGATCTCCACCATCGGCGGCCCGTTCCACGACGGCATCTCTCCCATCG
GGTGCCTCCTCTCCCTCGGGTTCTTGTGGCACTCTGGCCCTGCTTCTGGCACGAAGTGGACCTGCATCTCCTTTGGCGTC
TCAAGCTCGGCCGGTCTCTCTTTCGGCCTCTCCTCCTCCCTGACCGCCTGCATGGTCGCTGACATCTCTCTGTCCGGAGG
GGGCTGCTGAGGGTGGTGGTATTCCTGTGGCTGCTCAGCGGGCGGCTGAGGGTGGTATGCCGGTTGCTGCTCGGTGTGCT
GCTGAGGGTGGTATTCCTGTGGCTGCTCAGTGGGCGGCTGCTGGTGGTATGCCGGTGGCTGCTCAGTGGGCGGCTGAGGG
TAGTATGCCTGTGGCTGCTGCTCGGTGGGCGGCTGAGGATGATATGCTTGTGGCTGCTCAGCGGGCGGCGGCGGTGACTC
CTTCCCCTTCCCCTTTGATTTTGATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGT
CGCCCATGATTTGGACGCCCTTGATCACCTTGCCTCCTTTGCATCTGATCCTGCATGATAGCTTGTGTGGATCGAACGGC
CCGTCGATGATGACTGCGTTATTGTTGGTGTCGAAGGAGATCGTCCTAATCCTCTCTTGATCTGCACAAGTCATTATCTT
GTAAGATATACAGTAGCAAGTAAGAAATTTGTGTTCCTGATTGGTATGGCAAGCTCATGTGGAGAGTTTCTTTGTGACTG
AGATGCATGAACGAACATATAGCATTAG-TGCAGTACAGTCAGATGTTCTACGCACCTTGAAGGCTGCAAAGAATCTTGC
GGATCTTTTTGTAGCACTGGTGGCAATCAAGGTCCACCCTTAAGATTATAGTGGAGATCTGTGTTGACAGAAGCATCAGT
GAAGTAAATAGTTACTA---------------------------------------------------------------
------------------------------------------ATGAAGCCCCAAAATCAGTGCATACTTTCTAATTTCAG
AGACGCTGAGCTTTTGTTCTTGGTTATCTTATGAATGAATGCTCACAATAGTTCTTTGGGACACAAAAACTGCAATTCCT
TCACTACTTGATCAATAATAAGGGCATCTTTGGAACTCAGGTTTCTAAAAACTTATGAATAGGCAAAAAAGTATGGTTGA
GATGTTATGACCT-CTTTGGTCCATGGGAAACTATAATATGGGAATTTACTTGACTCATTTGATGCTAATAATTTCTGTA
GGCGAATATGAAGTGACAGAAGATGTGTGGGAGGCACAAATACAAATTTCCATGAGGTCTAACCACTATTTTTCACTAGG
TGGGGTTTAATCTCTTCTTAAAAATCCTATGAAATTGTGGTATAAGAAAACAATCCATATAAATTGATGGTCTCGCTTCT
TTTATCCGAGTGACCCTAAATTTTTTTTTCCTACGAGCAGAAATCATGCAAAAATC
>chr2B_1
GTATTGATGTATTGCATTTAATCGTACGAATTTCTCACACACCATTTATTTGCCAAAGTGCTAAAAATTGTTTCACACCA
CTATGTTGAAAAGGAGACACTATCGAACAAGAATCTGCCAAAGTGCTAGGTTGTTTGACGGCACCATGTAGAAAAGTAGA
CATTATTCAACAAGAATAACGAGTTTATTTAATAAAAAGGGAAGGCATCGATTCTCTCT--TCTTTTCAGAAATGATCTG
ATGTGAATGGGAGAGCATCAATAGTTGGCGATG-----------------------------------------------
--------ATACACGAATCATTT-----GTAATCAAGACATGCAAAAAG-ATGCAACTTGCCTATGATCAACGCAGCACA
ATGGTTGTAGCGCACGAAACAGTGAACATATCACATTATGGTGCAAGCACCCGCTTGATCCTCCTCGCAGATAACCCGGT
AGCCGCTGTATCCGCCGCAGTACGGCGTGCGTGCGCCACCGTAGAAACCGGCTGGCGGCGGCAGCGCCACCGCGGCGGTG
TAGCCGTACGTCCTGCCGCAGTCTGAGCACCTGCAACTTCCGTAGTACCCCTGGTAGCATGACGCGCAGCACGTGCAGCG
GCACGGGCCCACAGGTCGCGCCGGCAGCGAGGGGATCTCCACCATCGGCGGCCCGTTCCACGAAGGCATCTCTCCCATCG
GGTACCTCCTCTCCCTAGGGTTCTTGTGGCACTCCGCCCCTGATTCTGGCACGAAATGGACCTGCATCTCCTTTGGCTTC
TCAAGCTCGGCCGGCCTCTCTTGCGGCCTCTCCTCTTCCCTGATTGCCGGCATGGTCGCTGATACCTCTCTGTCCGGAGG
GGGCTGCTGA---TGGTGGTATTCCGGTGGCTGCTCAGCGGGCGGCTGAGGGTGGTAGGCCGGTTGCTGCTCGGTGGGCT
GCTGAGGGTGGTATTCCGGTGGCTGCTCAGTGGGCGGCTGCTGGTGGTATGCCGGTGGCTGCTCGGTGGGCGGTTGAGGG
TAGTATGCCTGTGGCTGC---TCGGTGGGTGGCTGAGGATGATATGCTTGTGGCTGCTCAGCCGGCGGGGGCGGTGACTC
CTTCCCCTTCCCCTTTGATTTTGATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGT
CGCCCATGATTTGGATGCCCTTGATCACCTTGCCTCCTTTGCATCTGATCCTGCATGATAGCTTGTGTGGATCGAACGGC
CCGTCGATGATGACTGCGTTATTGTTGGTGTCAAAGGAGATCGTCCTAATCCTCTCTTGATCTGCACAAGTCATTATCTT
GTAAGATATACAGTAGCAAGTAAGAAATTTGTGTTCCTGATTGGTATGGCAAGCTCATGTGGAGAGTTTCTTTGTGACTG
AGAAGCATGAACGAACAGATAACATTAG-TGCAGTACAGTCAGATGTTCTACGCACCTTGAAGGCTGCAAAGAATCTTGC
GGACCTTTTTGTAGCACTGGTGGCAATCAAGGTCGACCCTTAAGATTATAGTGGAGATCTGTGTTGACAGAAGCATCAGT
TAAGTAAATAGTTACTA---------------------------------------------------------------
------------------------------------------ATGAAGCCTGAAAATAAGTGCATACTTTCCAATTTCAG
AGACGCTGAGCTTTTGTTCTTGGTTATCTTATGAATGAATGCTCACAATAGTTCTTTGGGACACAAAAACTGCAATTCCT
CGACTACTTGAACAATAACAAGGGCATCTTTGGAACTCAGGTTTCTAAAAGCTTATGATTAGGCAAAAATGTATGGTTAA
GATGTTATGACCT-CTTTGGTCCATGGGAAACAAAAATATGAGAATTTACTTGACTCATTTGATGCTAGTAATTTCTGTA
GGCGAATATGAAGTG--AGAAGATGTCTGGAAGGCACAAATACACATTTCCATGTGGTCTAACCACTATTTTTCACTAGG
TGGTGTTTAACCCGTTCTTAGAAATCCTATGAAATTGTGGTGTAAGAAAACAATCCATAGAAATTGATTGCCTTGCTTCT
TTTATCCAACTGACCCTAAAAACAAATTTCCAACGAGCAGAAATCATGCAAAAATC
>SNPs
------S--------------------S------------------------------------S---------------
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----------------------------------------------------------------------SS--------
-------------------------------------------------S--SSSSSSS--------------S------
----S------------------SSSSS----------------------------------------------------
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-------------------------------------------------S------------------------------
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---------------------------------------------------------S--S-------------------
----------------------------------S-----S-----------------S---------------------
-------S----------------S--------------------S--------------------------------S-
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-------------------------------------------------------------------------S------
----------------------------------------------------------------S----------S----
-S---S------------------------------S--------S-S-------------S------------------
-----------S----------S-S--SS---------S---S-------------------------------------
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S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
---S-----------------------------------------S----------------------------------
-------S--------------------------------------------S---------S-----------------
-----S------SS------------------S--------------SSS------------------------S-SSSS
-------------------------S-------------------------------------S----------------
--S------S------------------S--------------------S-----------------------S-S----
----S----S-S------------------SS--S-S-------------------
>forward_293
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---------------------------------ATTCATGCAAAGCCCCTCCC---------------------------
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>reverse_1119
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------------------------------------------------------------------------------CC
CTTCCCCTTCCCCTTTGA--------------------------------------------------------------
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>forward_1086
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--------------------------GGGCGGCTGAGGATGATATT----------------------------------
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>reverse_1934
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-------------ACTTTGGTCCATGGGAAACCA----------------------------------------------
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