>input_sequence_87061
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-------------------------ATGCCGGTGGCTGCTCGGTGGGCGGTTGAGGGTAGTATGCCTGTGGCTGC---TC
GGTGGGTGGCTGAGGATGATATGCTTGTGGCTGCTCAGCCGGCGGGGGCGGTGACTCCTTCCCCTTCCCCTTTGATTTTG
ATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGTCGCCCATGA--------------
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>chr2B_1_TraesCS2B01G546200
AGTCGAGAGTCGAGGATGTAGGCATTTGTGTTGAACCTTATTAACAAATCTGAGTGTCGTATTGATGTATTGCATTTAAT
CGTACGAATTTCTCACACACCATTTATTTGCCAAAGTGCTAAAAATTGTTTCACACCACTATGTTGAAAAGGAGACACTA
TCGAACAAGAATCTGCCAAAGTGCTAGGTTGTTTGACGGCACCATGTAGAAAAGTAGACATTATTCAACAAGAATAACGA
GTTTATTTAATAAAAAGGGAAGGCATCGATTCTCTCT--TCTTTTCAGAAATGATCTGATGTGAATGGGAGAGCATCAAT
AGTTGGCGATG-------------------------------------------------------ATACACGAATCATT
T-----GTAATCAAGACATGCAAAAAGATGCAACTTGCCTATGATCAACGCAGCACAATGGTTGTAGCGCACGAAACAGT
GAACATATCACATTATGGTGCAAGCACCCGCTTGATCCTCCTCGCAGATAACCCGGTAGCCGCTGTATCCGCCGCAGTAC
GGCGTGCGTGCGCCACCGTAGAAACCGGCTGGCGGCGGCAGCGCCACCGCGGCGGTGTAGCCGTACGTCCTGCCGCAGTC
TGAGCACCTGCAACTTCCGTAGTACCCCTGGTAGCATGACGCGCAGCACGTGCAGCGGCACGGGCCCACAGGTCGCGCCG
GCAGCGAGGGGATCTCCACCATCGGCGGCCCGTTCCACGAAGGCATCTCTCCCATCGGGTACCTCCTCTCCCTAGGGTTC
TTGTGGCACTCCGCCCCTGATTCTGGCACGAAATGGACCTGCATCTCCTTTGGCTTCTCAAGCTCGGCCGGCCTCTCTTG
CGGCCTCTCCTCTTCCCTGATTGCCGGCATGGTCGCTGATACCTCTCTGTCCGGAGGGGGCTGCTGA---TGGTGGTATT
CCGGTGGCTGCTCAGCGGGCGGCTGAGGGTGGTAGGCCGGTTGCTGCTCGGTGGGCTGCTGAGGGTGGTATTCCGGTGGC
TGCTCAGTGGGCGGCTGCTGGTGGTATGCCGGTGGCTGCTCGGTGGGCGGTTGAGGGTAGTATGCCTGTGGCTGC---TC
GGTGGGTGGCTGAGGATGATATGCTTGTGGCTGCTCAGCCGGCGGGGGCGGTGACTCCTTCCCCTTCCCCTTTGATTTTG
ATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGTCGCCCATGATTTGGATGCCCTTG
ATCACCTTGCCTCCTTTGCATCTGATCCTGCATGATAGCTTGTGTGGATCGAACGGCCCGTCGATGATGACTGCGTTATT
GTTGGTGTCAAAGGAGATCGTCCTAATCCTCTCTTGATCTGCACAAGTCATTATCTTGTAAGATATACAGTAGCAAGTAA
GAAATTTGTGTTCCTGATTGGTATGGCAAGCTCATGTGGAGAGTTTCTTTGTGACTGAGAAGCATGAACGAACAGATAAC
ATTAG-TGCAGTACAGTCAGATGTTCTACGCACCTTGAAGGCTGCAAAGAATCTTGCGGACCTTTTTGTAGCACTGGTGG
CAATCAAGGTCGACCCTTAAGATTATAGTGGAGATCTGTGTTGACAGAAGCATCAGTTAAGTAAATAGTTACTA------
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-------------------ATGAAGCCTGAAAATAAGTGCATACTTTCCAATTTCAGAGACGCTGAGCTTTTGTTCTTGG
TTATCTTATGAATGAATGCTCACAATAGTTCTTTGGGACACAAAAACTGCAATTCCTCGACTACTTGAACAATAACAAGG
GCATCTTTGGAACTCAGGTTTCTAAAAGCTTATGATTAGGCAAAAATGTATGGTTAAGATGTTATGACCT-CTTTGGTCC
ATGGGAAACAAAAATATGAGAATTTACTTGACTCATTTGATGCTAGTAATTTCTGTAGGCGAATATGAAGTG--AGAAGA
TGTCTGGAAGGCACAAATACACATTTCCATGTGGTCTAACCACTATTTTTCACTAGGTGGTGTTTAACCCGTTCTTAGAA
ATCCTATGAAATTGTGGTGTAAGAAAACAATCCATAGAAATTGATTGCCTTGCTTCTTTTATCCAACTGACCCTAAAAAC
AAATTTCCAACGAGCAGAAATCATGCAAAAATCTTATGATAATCTCTGAGGTTTTTGTTACCAAGTGAATGACTAAGTCA
GAAAATGGGAAGCAACATG--CATATGGACACATGGGTTTCGAATTACAAGAAGTGA
>chr2A_1
AGTCAAGAGTTGAGGATGTAGGCATTTATGTTGAACCTTATTAACAAATCTGAGCATCGTATTGTTGTATTGCATTTAAC
CGTATGAATTTCTCACACACCATTTATTTGCCAAAGTGCTAAAAATTGTTTCAAACCACTATGTTGAAAAGGAGACACTA
TCGAACAAGAATCTGCCAAAGTGCTAGGTTGTTTGACGGCACCATGTAGAAAAGTAGACATTATTGAACAAGAATAACGA
GTTTATTTAATAAAAAGGGAAGGCATCGATTCTCTCTCGTCTTTTCAGAAATGATCTGATGTGAATGGGAGAGCATCG--
-GTTGGCGACGATTCATGCAAAGCCCCCCC-------TACAAAAATGATTCATGCATAGCAGATGCATACACGAATCATT
G-----GTAATCAAGACACGCAAAACACATGCAAATTTGCCTAA-----GCAGCACAATGGTTGTGGCACACGAAACAGT
GAACAGATCACATTATGATGCAAGCACCCGCTTGATCCTCCTCGCAGATAACCCGGTAGCCGCTGTATCCGCCGCAGTAC
GGCGCGCGTGCGCCACCGTAGCAGCCGGCTGGCGGCGGCAGCGCCACGGCGGCGGTGTAGCCGTACGTCCTGCCGCAGTC
TGAGCACCTGCAACTTCCGTAGTACCCCTGGTAGCATGACGCGCAGCACGTGCAGCGGCACGAGCCCACAGGTCGCGCCG
GCAGCGAGGGGATCTCCACCATCGGCGGCCCGTTCCACGACGGCATCTCTCCCATCGGGTGCCTCCTCTCCCTCGGGTTC
TTGTGGCACTCTGGCCCTGCTTCTGGCACGAAGTGGACCTGCATCTCCTTTGGCGTCTCAAGCTCGGCCGGTCTCTCTTT
CGGCCTCTCCTCCTCCCTGACCGCCTGCATGGTCGCTGACATCTCTCTGTCCGGAGGGGGCTGCTGAGGGTGGTGGTATT
CCTGTGGCTGCTCAGCGGGCGGCTGAGGGTGGTATGCCGGTTGCTGCTCGGTGTGCTGCTGAGGGTGGTATTCCTGTGGC
TGCTCAGTGGGCGGCTGCTGGTGGTATGCCGGTGGCTGCTCAGTGGGCGGCTGAGGGTAGTATGCCTGTGGCTGCTGCTC
GGTGGGCGGCTGAGGATGATATGCTTGTGGCTGCTCAGCGGGCGGCGGCGGTGACTCCTTCCCCTTCCCCTTTGATTTTG
ATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGTCGCCCATGATTTGGACGCCCTTG
ATCACCTTGCCTCCTTTGCATCTGATCCTGCATGATAGCTTGTGTGGATCGAACGGCCCGTCGATGATGACTGCGTTATT
GTTGGTGTCGAAGGAGATCGTCCTAATCCTCTCTTGATCTGCACAAGTCATTATCTTGTAAGATATACAGTAGCAAGTAA
GAAATTTGTGTTCCTGATTGGTATGGCAAGCTCATGTGGAGAGTTTCTTTGTGACTGAGATGCATGAACGAACATATAGC
ATTAG-TGCAGTACAGTCAGATGTTCTACGCACCTTGAAGGCTGCAAAGAATCTTGCGGATCTTTTTGTAGCACTGGTGG
CAATCAAGGTCCACCCTTAAGATTATAGTGGAGATCTGTGTTGACAGAAGCATCAGTGAAGTAAATAGTTACTA------
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-------------------ATGAAGCCCCAAAATCAGTGCATACTTTCTAATTTCAGAGACGCTGAGCTTTTGTTCTTGG
TTATCTTATGAATGAATGCTCACAATAGTTCTTTGGGACACAAAAACTGCAATTCCTTCACTACTTGATCAATAATAAGG
GCATCTTTGGAACTCAGGTTTCTAAAAACTTATGAATAGGCAAAAAAGTATGGTTGAGATGTTATGACCT-CTTTGGTCC
ATGGGAAACTATAATATGGGAATTTACTTGACTCATTTGATGCTAATAATTTCTGTAGGCGAATATGAAGTGACAGAAGA
TGTGTGGGAGGCACAAATACAAATTTCCATGAGGTCTAACCACTATTTTTCACTAGGTGGGGTTTAATCTCTTCTTAAAA
ATCCTATGAAATTGTGGTATAAGAAAACAATCCATATAAATTGATGGTCTCGCTTCTTTTATCCGAGTGACCCTAAATTT
TTTTTTCCTACGAGCAGAAATCATGCAAAAATCTTATGAAAATCTCTTTGGTTTTTGTTACCAAGTGAATGACTAAGTCA
GAAAATGGGAAGCAACATACACATGTGGACACATGGGTTTTGAATTACGAGAAGT--
>chr2D_1
AGTCAAGAGTTGAGGATGTAGGCATTTATGTTGAACCTTATTAACAAATCTCAGTGTCGTATTGCTGTATTGCATTTAAT
CGTACAAATTTCTCACACACCATTTATTTGCCAAAGTGCTAACAATTGTTTCACACCACTATGTTGAAAAGGAGACACTA
TCGAACAAGAATCTGCCAAAGTGCTAGGTTGTTTGACGGCACCATGTAGAAAAGTAGACATTATTGAACAAGAATAACGA
GTTTATTTAATAAAAAGGGAAGGCATCGATTCTCTC--GTCTTTTCAGCCATGATCTGATGTGAATGGGAGAGCATCAAT
AGTTGGCGATGATTCATGCAAAGCCCCTCCCCCCCCCTACAAAAATGATTCTTGCATAGCAGCTGCATACACGAATCATT
GGTACAGTAATCAAGACACGCAAAACACATGCAACTTTGCCTAA-----GCAGCACAATGGTTGTGGCACACGAAACAGT
GAACAGATCACATTATGGTGCAAGCACCCGCTTGATCCTCCTCGCAGATAACCCGGTAGCCGCTGTATCCGCCGCAGTAC
GGCGTGCGTGCGCCACCGTAGCAACCTGCTGGCGGCGGCAGCGCCACGGCGGCGGTGTAGCCGTACGTCCTGCCGCAGTC
TGAGCACCTGCAACTTCCGTAGTACCCCTGGTAGCATGACGCGCAGCACGTGCAGCGGCACGGGCCCACAGGTCGCGCCG
GCAGCGAGGGGATCTCCACCATCGGCGGCCCGTTCCACGAAGGCATCTCTCCCATCGGGTGCCTCCTCTCCCTAGGGTTC
TTGTGGCACTCCGGCCCTGCTTCTGGCACGAAATGGACCTGCATCTCCTTTGGCTTCTCAAGCTCGGCCGGTCTCTCTTG
CGGCCTCTCCTCCTCCCTGACCGCCTGCATGGTCGCTGACATCTCTCTGTCCGGAGGGGGCTGCTGAGGGTGGTGGTATT
CCGGTGGCTGCTCAGCGGGCGGCTGAGGGTGGTACGCAGGTTGCTGCTCGGTGGGCTGCTGAGGGTGGTATTCCGGTGGC
TGCTCAGTGGGTGGCTGATGGTGGTATGCCGGTGGTTGCTCAGTGGGCGGCTGAGGGTAGTATGTCTGTGGCTGCT---C
GCTGGGCGGCTGAGGATGATATTCTTGTGGCTGCTCAGCGGGCGGCGGCGGTGACCCCTTCCCCTTCCCCTTTGATTTTG
ATTTCTTTTTGCGACTGTTGCTCGGCGGTGGCCCGGCCATCTCTTCCGGCTTGCCGTCGCCCATGATTTGGACGCCCTTG
ATCACCTTGCCTCCTTTGCATCTGATCCTGCATGATAGCTTGTGTGGATCAAACGGCCCGTCGATGATGACTGCGTTATT
GTTGGTGTCGAAGGAGATCGTCCTAATCCTCTCTTGATCTGTACAAGTCATTTTCTTGGAAGTTATAC--TAGCAAGTAA
GAAATTTGTGTTCGTGATTGGTTTAGCAAGCTCATGTGAAGAGTTTCTTTGTGACTGAGATGCATGAATGAACATATAGT
AGTAAATGCAGTACATTCATATGTTCTACGCACCTTGAAGGCTGCAAAGAATCTTGCGGATCTTTTTGTAGCACTGGTGG
CAATCAAGGTCGACCCTTAAGATTATAGTGGAGATCTGTGTTGACAGAAGCA-CAGTAAAGTAAATAGTTACTACCTCTG
TTCGTTTTTATAAGACGTTTTAGACGTTAAGACACCGTTCAAAACAGTACAAAACAAGCTGTCTGAAACGTCTTATAAAA
ACAAACGGACGGAGTACTAATGAAGCCTCAAAATCAGTGCATACTTTCCAATTTCAGAGATGCTGAGCTTTTGTTCTTGG
TTATCTTATGAATGAATGCTCATAATAGTTCTTTGGGACACAAAAACTGCAATTCCTTCACTACATGATCAATAATAAGG
GCATCTTTGGAACTCAGGTTTCTAAAAACATATGAATAGT-AAAAATGTATGGTTGAGATGTCATGACCAACTTTGGTCC
ATGGGAAACCAAAATATGGGAATTACTTTGACTCATTTGATGCTAGTAATTCCATAG---GAATATGAAGTGACAGAAGA
TGCCTGGGAGGCACAAATACAAATTTCCATGAGGTCTAACTACTATTTTTCACTAGGTGTGGTTTATCCTCTTCTTAGAA
ATCCTGTGAAATTGTGGTGTAAGAAAGCAATCCATAGAAATTGATGGTCTGGTTTCTTTTACCCAAATCACCCTAAAAAC
AAATTTCTGACCAACAGAAATCATGCAAAAATCTTATGAAATTCTCTTTGGTTTTTGTTACCAAGTGAATGACTAAGTCA
CAAAATGGGAAGCAACATGCACATGTGGACACATGGGTTTTGAATTACGAGAAGT--
>SNPs
----S-----S----------------S------------------------------------S---------------
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-----------------------------------------------------------------S--------------
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S-----------------S------SSSSSSS-SS-SSSSS-S-SSSSS----------------S--S-----------
-----S--------------------------------------------------------------------------
---------------------S-------------------------S--------------------------------
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------------------------------------------------------------S-------------------
-------------S-----S---------------------------------------------------S--------
------------S-------SS---S-------------S-S--------------------------------------
----------------------------------S---------------------------------------------
-----------------------------------------S--------S-----------------------------
------S--------------------------------S-----S----------------------------------
------------------------------------------------------------------------S-------
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---------S----------------------------------------------------------------------
------------------------------------------------------------S-------------S---S-
------------------------------------------------------------S-------------------
---------------------------------------------------------S----------------------
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----------------------------S-----S---------------------------------------------
---------------------------------------------------------SS---------S------S----
---------------------------S-------S-------------------S------------------------
---------S--------S-------------------------------------------------------------
-------S-------------S---------S----------------------------S--------SS---------
---------------------------------------------S-S--S---------------S-------------
--------S------------------------------S-------SS-------------------------------
------------------------S---------------S-------S------SS
>forward_486
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------------------------------------------------------------------GCGCACGAAACAGT
GAACAT--------------------------------------------------------------------------
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>reverse_1581
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------------------------------------------------------------CCTTTTTGTAGCACTGGTGG
C-------------------------------------------------------------------------------
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