>input_sequence_87056
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-------------------ATGGCGGCGACGGCGAACATGGCCAAGGCGGTGTTGCTGCTCTTGCCCGTGATACAGATCT
CCAGCGTGCTCGCCGCCGCGGCGAGGCCGTTCGTGGGGGACGATGGCCAGTGGTTGCAGAACGGGATCGGAATGGTGACA
CAGATGCTCGGCGGCGTCAAGCAGTCAGGGTCCAGCGGCCGCACGCACTGCTGCTGA-----------------------
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>chr2B_1_TraesCS2B01G294200
ATCTCCCAACCCCGCCTCGTATTTTTCGTGTTGGACAGGTTCCGGCCCTTTGACCTTTGGACACCGT------------T
CAGCACCGTTGATTTACCTAAAGCAACCGACGAGTAGTCTTGGTCTTTGATGACGTCAACACTGTACGGTCAATCTTTCT
CATGGACAAGACATCAGTTCGTTTACCTCAACCCGCCCATGCATGGCAAGAGCTACCAACAGATAA--------------
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-------ATCCTTTCTGACTCGAACTCTATAATACTCCT--------------TTTGGTCCACCGGAGCCACAGTATTTC
TTGACTAAGTAGCAGTAGTAGTACGACAGTGAACACGATAGATTGTTCATTGTTCATGTTGGCGACATAAACAAGGACGA
TGCGTGTCTGTATGCAAGTTCTCCCTGCCTCCCCCCTTTCGCGACCAGGACCAA-CCCATGTACACCAACACGAGGAATT
TCAGCTTCTCGTTGAACAAATAATATTCGTGTTCTTGCTTTTGACCCGAACGAATTCAGAATCCAAAAGCACGCATTCCT
TTACGTTAGTGCAGGTTTCTGCGACTCTTCCTCTGCTGCTAGCCTAGCCTGCTAGTGCTAGTACGTACTAGTAT--TATA
CGGTTCTACTTGTCGAACAAGCTGGAACGGTTCAAGAGCCGGGGTGTAGCATGATCGTGCGCTGATCGATTCAGACCGGC
GTGTTGGAGAGACCATGAACCAGTCTTGCACGAATTCTCCCTTCTCCACGTACGTTTGAATCGTTTACCGAGGGCACTCG
ACACAGAGATGGCCGCACGCCACGCAGCTCCGCATGCATGTATATATACAGACGAGCTCAGCGAGCTTCCTCCAATCCAT
TCCAAAGTAACCTCAGTTCCTCAGCCAGACATTGCTGCATACAAACACAAAAGCAGAACTTCAAGCTCGAAAAAAGACAG
GGCACTCCA----TCCTGCGTCTCTGTTGGATTCGGTCTACGGTCTTTCTCTTGATCGGGGCGATCTTTCCTGCTGTCTA
GCTAGTC-----GACGACAATGGCGGCGACGGCGAACATGGCCAAGGCGGTGTTGCTGCTCTTGCCCGTGATACAGATCT
CCAGCGTGCTCGCCGCCGCGGCGAGGCCGTTCGTGGGGGACGATGGCCAGTGGTTGCAGAACGGGATCGGAATGGTGACA
CAGATGCTCGGCGGCGTCAAGCAGTCAGGGTCCAGCGGCCGCACGCACTGCTGCTGACGTGCTCGCATAGTTTATATTGC
GTAGGTATAGGAATACTTGTGAAGAATTGTTCTTTGGTTCATTTGGGATCCACCAACCTTGAAGATGAACAGTACAGTCC
CGCTCTTCCTTTGTTTCTCCGGTGTTTCTGTGTACGTGGTGGGGTGCAGGATCTTCGTTTTCGTACCTTTTTCTGAGACC
AAAGCGTACGTATGACTATGTCCAGTTTCTAACATCTTGTGACTTGTGGTAGAATTAAGCCTTAAATGTGAATTCCCTGC
TCAGTTC-GAGAACATATCTGGTAGTTTCAGTAACTATTACGGTGCTCCATCGTAGCAGCTT--------TTTTTGACAG
GGAAGGTTTCCTCCCTCC------TGTATGATCTAATCTCGATTTCTCACAGCCATGTAGCCACGCGTGACTCTTAACGA
GGAGATATCAGGGCAGGGGTAAAATGTCAGACGACTTAGATTTAGCAGAACCATAAATATGGTAAGAAA----ACTTTAC
AAAAATATTAACTGTAGGACCATAATATCCGACGAACGTTCGTTTGAAGGGGTTTGCATCTGTAAATGTTTGAAATGACA
ACTTTAGTTATACGGAGTTGGCAATTTCTTTAGAAACACGTGTCATTTTCTAGAAAGAAGAAACAATTTGAGGCAAAAAA
GGCAGGATTTGCCAATCTCCTACCAGGTAAAGTTGAAGAAAAAAAGATGTTCGTTTGACATCTCCCTCCCAGCTAACGTT
CGCCAGTTATCATTACCCTAA---TTGTATTGCACAATATT-GTTTCTCACGGTCACCGTGTGTGTGTTAGCTACCAACT
TCTATGCCCCTCAACAGAACCATAATGAAGTATTTAT-TTTATTGTTTTTCACGTTTGAACCTAATATGGTGTTGAAATT
TTGTAACATGATAGGAAATGTACGACAAAAAAGTATCTATGATTACCAATTTGCAGTTATAGTGCACAGATTGTGGTATT
CCTCCAATGAAATCCAGAGAGTTCAAAACCAACAACGCTCG
>chr2D_1
ATCTCCCAACCCCACCTCGTATTTTTCGTGTTGGACAGGTTCCGGCCCTTTGACCTTTCGA-------------------
---CACCGTTGATTTACCTAAAGCAACCGACGAGTAGTCTTGGTCTTTGATGACGTCAACACTG-ACGGTCAATCTTTCT
CATGGACAAGACATCAGTTCGTTTACCTCAACCCGCCCATGCATGGCAAGAGCTACCAACAGATA---------------
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----------------------------------CTCCT--------------TTCGGTCCACCGGAGCCACAGTATTTC
TTGACTAAGTAGCAGTAGTAGTACGACAGTGAACACGATAGATTGTTCATTGTTCATGTTGGCCACATAA--AAGGACGA
TGCGTGTCTGTATGCAAGTTTTCCCTGCCTCCTCCCTTTCACGACCAGGACCAAACCCATGTACATGAACACGAGGAATT
TCAGCTTCTCGTTGAACAAATAATATTCGTGTTCTTGCGTTTGACCCGAACGAATTCAGGATTCAAAAGCACGCATTCCT
TTACGTTAGTGCAGGTTTCTCCGACTCTTCCTCTGCTGCTAGCCTAGCCTGCTAGTACG---------TAGTAATATATA
CGGTTCTACTTGTCGAACAAGCTGGAACGGTTCAAGAGCCGGGGTGTAGCATGATCGTGCGCTGATCGATTCAGACCGGC
GTGTTGGAGAGACCATGAACGAGTCTTGCACGAATTCTCCA--------------TTGAATCGTTTACCGAGGGCACTGG
ACACACAGACAGCCGCACGCCACGCCGCTCTACATGCATGTATATATACGGACGAGCTCAGCGAGCTTCCTCCAATCCAT
TCGAAAGTAACCTCAGTTCCTCAGCCAGACATTGCTGCATACAAGCACAAAAGC-GAACTTCAAGCTCGAAAACAGACAG
GGCACTCCA----TCCCGTGTCTCTGTTGGGTTCA-------GTCTTTCTCTTGACCGGGGCGATCTTTCC---------
--TAGTC-----GACGACAATGGCGGCGACGGCGAACATGGCCAAGGTGGTGTTGCTGCTCTTGCTCGTGATACAGATCT
CCAGCGTGCTCGCCGCCGCGGCTAGGCCGTTCGTGGGGGACGACGGCCAGTGGTTGCAGAACGGGATCGGGATGGTGACA
CAGATGCTCGGCGGCGTCAAGCAGTCAGGGTCCAGCGGCCGCACGCACTGCTGCTGACGTGCTCGCATAGTTTATATTGC
ATAGGGATAGGAATACTTGTGAAGAATTGTTCTTTGGTCCATTTGGGATCCAGCAACCTTGAAGATGAACAGTACAGTCC
CGCTCTTCCTTTGTTTCTCGGGTGTTTCTGTGTACGTGGTGGGGTGCAGGATCTTCGTTTTCGTGCCTTTTTCTGAGACC
AAAGCGTACGTATGACTATGTCCAGTTCCTAACATCTTCTGACTTGTGGTAGAATTAAGCCTCAAATGTGAATCCCTTGC
TCAGTTCGGAGAACATATCCGGTAGTTTCAGAAAATATTACGGCGCTCCATCGAAGCAGTTTTCTTTTTCTTTTTGACAG
GGAAGGTTTCCTACCTCCAATAGCTGTATGATCTAGTCTCCATTTCTCACAGCCA--------CGCGTGAATCTTAACGA
GGAGATATCAGGGCAGGGATAAAATGTCAGACGACTTAGATTTAGCAGAACCATAAATATGGT----AA----ACTGTTC
AAAAATATTAACTGTAGGACCGTAA-------------------------------------------------------
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>chr2A_1
ATCTCCCCACCCCACCTCGTATTTTTCGTGTTGGACAGGTTCCGGCCCTTTGACCCGTCGACACAGACCTTAGAGACGGT
CAGCACCGTTGATTTACCTAAAGCAACCGACGAGTAGTCTTGGTC-TTGATGACGTCAACACTGTACGGTCAATCTTTCC
CATGGACAAGACATCAGTTAGTTACTTAATTCAACCCAACCCATGGCAATAGCTACCAACATATATTGCCCCTGTTTTTA
TTATTTATTTAATCCACGTATTAGCTTTGCTCAAGGTCAAACTTTGTAAACTTTGCAAAGTTTATAAACAAAAATATTAA
CATATATAATAACAAATTAATATCATTAGATTCATTATTGAATGTACTTTCACGTCATATGGATTTGTTAGGGTAAATGT
TTGTATTTTTTTCCATAAACTTGATTAAACTTTACGAAGTTTGACTTCAGTCAAACCTAATATGCAGAGTAAATAAAAAC
AGAGTACATCCTTTCTGACTCGAACTCTATAAGACATTAAGATACACGATACATTTGGTCCAACG--GCTACAGTATTTC
TTGACCAAGTAGCAGTGGTAGTACGACAGTGAACACGATAGATTGTTCAT-------GTTGGCGACATTAACAAGGACGA
TGCGTGTCTGTATGCAAGTTTTCCCTGCCTCCCCCCTTTCACGACCAGGACCAA-CCCATGTACACCAACACGAGGAATT
TCAGCTTCTCGTTGAACAAATAATATTCGTGTTCTTGCGTTTGACCCGAACGAATTCAGAATTCAAAAGCACGCATTCCT
TTACGTTAGTGCAGGTTTCTGCGACACTTCCTCTGCCGCTAGCCTAGCCTGCTAGCACG---------TAGTAT--TATA
CGGTTCTACTTGTCCAACAAGCTGGAACGGTTCAAGAGCCGGAGTGCAGCATGATCGTGCGCTGATCGATTCAGACCGGC
GTGTTGGAGAGACCATGAACGAGTCTTGCACGAATTCTCCCTTCTCCACGTACGTTTGAATCGTTTACCGAGGGCACTGG
CTG----GATAGCCGCACGCCACGCCGCTCTGCATGCATGTATATATACAGACGAGCTCAGCGAGCTTCCTCCAATCCA-
----AACTAACCTCAGCTCCTCAGCCAGACATTGCTGCATATAAGCACAAAACCAGAACTTGAAGCTCGAAAACAGAGAG
TACTCCACCCTGTTCCTGTGTCTCTTTTGGGTTCA-------GTCTCTCTCTTGATCGGGGCGATCTTTCC---------
--TGCTGTGTCAGACGACAATGGCGGCGACGGTGAACATGGTGAAGGCGGTGTTGCTGCTCTTGCTCGTGATACAGATCT
CCAGCGTGCTCGCCGCCGCGGCGAGGCCGTTCGTGGGGGACGACGGCCGGTGGTTGGAGAACGGGATCGGGATGGTGACA
CAGATGCTCGGCGGCGTCAAGCAGTCAGGGTCCAGCGGCCGCACGCACTGCTGCTGACGTGCTCGCATAGTTTATATTGC
ATAGGTATAGGAATACTTGTGAAGAATTGTTCTTTGGTTCATTTGGGATCCAGCAACCTTGAAGATGAACAGTACAGTGC
CGCTCTTACTTTGTTTCTCTGGTGTTTCTGCGTACGTGGTGGGGTGCAGGATCTTCGTTTTCCTGCCTTTTTCTGAGACC
AAAGCGTACGTATGACTATGTCCAGTTCCT----------GACTTGTGGTGGAATTAAGCCTTAAATGTGAATCCCCTGC
GTGAATTAGACAAACTATTCAGAA-------AATATATTACGGCGCTCCATCGTAGCAGTTTTTG-------TTTGACAG
GGAAGGTTTCCTACCTCCAATAGCGGTA-----------------------------------------AATCTTAACGA
GGAGATATCTGGGTAGGGGTAAAATGTCAGACGACTTAGATTTAGCAGAACCATAAATATGGT----AAGAAAACTTTAC
AAAAATATTAACTATAGGACCGTAAAATCTGACGAACGTTCGTTTGAAGGGGTTTGCATCTATAAACGTTTTAAACGACA
AGTTTAGTTATATGAAGTTGG------------------------------------------CAATTTGAGGCAAAAAA
GGCAGGATTTGCCA-TCTCCTACCAGGTAAAGTTGAAGAAAAAA-GATGTTCGTTTGACAT-TCCCTTTCAGCTGACGTT
CGCCGGTTATCATTACCCTAATTGTTGTATTGCACAATATTTGTTTCTCACGGTCACCGAGTGTGTGTTAACTACCAACT
TCTATACCCCTCAACAGAACCATAATGAAGTATTTATATTTATTGTTTTTCATGTTTGAACCTAATATGGTGTTGAATTT
TTGTAACATGATAGGAAATGTACGACACAAAAGTAACTACGATTACCAATTTGCAGTTATAGTGCACAAAT---------
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>SNPs
-------------S--------------------------------------------S-----S-S-------------
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--------------------------------S-----------------------------------------------
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--------------------S-------------------S---------------------------------------
--------------------------------------S-----------------------S-----------------
--------------------------------------------------------S-SSSSSSSSSS------------
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--------------------S---------------------------------------------------------S-
-----S----S--------------S----S-------------------------------------------------
--S-----------------------------------------S----------------------------S------
------------------S-----------S---SSSSSSSS-----------------------------SSSSSSSSS
SS---------------------------------------------------------------S--------------
-------------------------------------------S--------------------------S---------
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S---------------------------------------------------S---------------------------
-------------------S--------------------------------------------S---------------
---------------------------S----------S----------------------------------S------
-------------------S-----------S--S--------S---------------S--------------------
------------S----------------------S----S--------------SSSSSSSS-------S---------
---------------------------------------------------------------SSSS-------------
---------------------S---S---S-------------------------------S----S----S---S----
-S----------S-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
--------------S-----------------------------S----------------S-----SS-----S-----
----S------------------------------------------------------S----------S---------
-----S----------------------------------------------S------------------------S--
---------------------------S-------S---S----------------------------S--SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_859
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---------------------------------------TAGCCTAGCCTGCTAGTGCT---------------------
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>reverse_1903
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--------------------------------------------------------------ACGCGTGACTCTTAACGA
GG------------------------------------------------------------------------------
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