>input_sequence_87054
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--------------------------------------------------------------------ATGATCGTCGGG
GCGAAGGTGGAGCGGGTGCTGGCCACGTCCAAGGCGCCCGGCGCTTGCCCGTCCTGTGGCGGCCCCGTGGTGGCGACCGA
CGTGGAGAGCGAGCGGCGCATCCTGTGCCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGTTTCC
GCCGCCTCGTCACCATCTACAGCTAG------------------------------------------------------
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>chr2A_1_TraesCS2A01G432500
AATGGAATATGTTCGCATATATAGCTATGAGGTAAATATAAACTATGTATATGTTATGTCCATGTATTTGAACAAAATAG
GATAACAAATGTTCATATATTTTGCACCTTTTTTTGCTAACTTTGAATTATTGCCCATAGCGAACAAAAATAAAATAAAA
TGTACAAACAAACGCGCACACTTTGCTGTGTCGTCCCTGATCCATAGCAGACACGCAGAAATTTAATTAGTTATTACAGC
TAAAAGAAAATCAAAGTGATGCAAGGGTAGCGTGTACTCCTCCACTGGAACTGGAGAACCACACATGGGCATACCGCTCT
AGCAAGCCTGCCGCCCGTGGATCGTGTACACGACCAGCGGGCCGCCCATCGAGACGTACGCGAGCATGTAAAAACCTGTA
TCTTCAGAACTTTGTCGTCTCTTCACATTCGAAGCAAGTGGTTGCTGACGTTGTTAAAGAAACTAGAGGCAAGGATAAAG
CGACAAAAGAGTACTTTTCAGTGTAATTTTATTTTCAAAGGTCGTGCTGTCAACTATGACGCACATAGTTTTGATTTTTG
TTGGGACGAAGCACACAGTTTAACCAAGTACTTTCTTTCATTGGGACGTGGACCTCATGTATGATTTGGCCAATCTCATA
ACACTTCTTGTATCCCACAATATATGTGATTTTTGATGAATAAAACTTGACCTTCCAAACAATTAATGTAAAAACCTCAA
CAGATTCTTAAAAAAAACCATTTAATGTAAAAACCGCAGGCAACAGCGGTCCGCGCGCCCGGTCCTGCCGCTGCTTTGGC
TGCTTCCCGCCTGCGTCCTCGTCCCCTCC---GCTATATACGGGGCCTGCCACATGCCATCCCCGGCGCCGGCCACTCAA
AATCCACAGACTTTCCAAGGC------AAAAAA-TCCCATTTCCCTACTCCGATCA-CCCTCTTCTTTCTT---------
----TCCTGCGACCGAGGGGATCGTCG----ATCGATGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCGTCGGG
GCGAAGGTGGAGCGGGTGCTGGCCACGTCCAAGGCGCCCGGCGCTTGCCCGTCCTGTGGCGGCCCCGTGGTGGCGACCGA
CGTGGAGAGCGAGCGGCGCATCCTGTGCCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGTTTCC
GCCGCCTCGTCACCATCTACAGCTAGA------TCAAGCTTCTTCCAGCAG-------TATCGATCTGTCCATCCTTCGA
ATAGCCGCG---TAGGGAGCCAATCAGTTAATCCGCTCGAGTTCTTTGGTTCTTC-------------------------
-------------------------------------------------------------------TTGGCCGTGGTTA
CGGCCCTAGAGTAGCTTGCTGGCCTGGCC-----AATGTAATGGGGATTCTGTGTTAATTCTTCTAGTACTCCCTCCGTT
CAGAATTACTTGTCTCGGAAATGGATGTATCTAGAACTAAAATACGTCTAGATACATCCATTTTTGCGACAAGTAATTCC
GAACGGAGGGAGTAGTTCTTAGCTGGTGTATTGATCGTTC----------TGCGTCATGTGAGGAGCGCTGCGATTGGCA
CTCTGCT------GCAGTAGTAGCAGTTCTTAGCTGGTGTATTGCAGTAAGCTCCCTATCAATGGTGGCA----------
GCCTTAATGCATAGGGCAG-----TATTGGAAATTTGG---AATGCGCTTGCCGTCCGCCTTCATTAAGATGG--CAATT
AACGTACTGATGGGACCATTTCGCATGGATCGTACACGTATGCAGATACGCAAAAGTACATTGATCCGTCCCG----ATC
GAGC-----------CT--------------CTATAGTGGTGCTCATTG---------CCGCCGAATCTCTGTCACTGGC
TCAC----TGCATGTATTGTGCCGATCACTGGCCACTGCAG----TAGCAGCAGCCACCGATAAT-GGTGACGCCTGGCT
TTGGCCGGCCGTAGCATTCTACATGCTC---CCACAA------GCCACAGCAGCCGGCCGGCCGTTCGTCAGTCGGTCCG
TCCGTTGGTTACCTGTTCCTTTCGGCGGCATATCACGTACTACGACTTAGTACGAGTTAAAATCCACACGATTAGACGGG
CGGACGGACGCGTCGACCTGCGCAT-------T-AGCCGTCCCCCCAATCTGAACGCGCAAACGAGCGGGACGAAAGATG
TGTTCAAGGTCCATTGGGATCTCTTTATTACTGGTTGCCGAAAGAAAAATTGATCTCTGGATTGTTTCGAGTTCCAGGCA
CCAAGATGCGTTCAGGGATTAATTACGATTATCCTCCAA
>chr2D_800
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-------------------------------------------------------------------------------C
TGCTTCCCGCCTGTGCCCTCGCCCCCTCC---GCTATATATGGGG--CTGC-CATGCCAT-CCCGGTACCGGCCACA-AA
AATCCCCAGACTTTTGAAGGC------CAAACC-ACCAACTCCCC----CCTTT------TCTTCCTCCTC---------
----TCGTGCGACCGAGGGGATCGTCGATCGATCGATGGCGACAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGG
GCGAAGGAGGAGCGGGTGGTGGGCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCGGTGGTGGCGACCGA
CGTGGAGAGCGAGCGGCGCATCCTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCAGGTGCTTCC
GCCGACTCGTCACCGTCTACGGCTAGAAGAATC-CAAGCCTCCGCT----------CCTATCAATCGATCCATCCATCAA
CTAGCGTGCGCAGTAGAACAATC------------CCCGAGTTCTTTGGTTCTTG-------------------------
---------------------------------------------------------------TTAGTTGGCCGTGGTTA
CGGTCCTAGAGTAGCTTGCTAGCCTGGCTAATGTAAT-------------------------------------------
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>chr2A_805
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----TCCTGCCTGCGCCCTCGTCCCCTCC---GCTATATAATGGGGCCTGC-CATGCCATCGCCGGCACCGGCCAGTCAA
AATCCCCAGACTTTCCAAAGC------CAAAAT-CCCACCTCCCT----CCTCCGATCCC-CC-CTTCTTCCTCCTCT--
CGTTTCTTGCGGCCGAGGGGATCGTGGATCTATCGATGGCAGCAATGGGTGTGGGCGGAGCTGTGAAGATGATCTGCGGG
ACGAAGGTGGAGCGGGTGGTGGGCACGGGTAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACGGA
CGTGGAGAGCGAGCGGCGCATCCTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCCGGTGCTTCC
GCCGCCTCGTCACCGTCTACAGCTAGTAGCTCCTCAAGCTTCTTCCGGTACTG--ATCTATTCATCCGTCGATCGGTCGG
CTAGCGACGTGCG---AGGCCAATCAGTTAATCGTCCCGGGTTCTTTTGTTGTTC-------------------------
---------------------------------------------------------------TTC-TTGGCCGTGGTTA
CGGCCCTAGAGCAGCTTGCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGTGTTAGTTCCAGTTCTTCAGTACACAAA
TGAT----------------------------------------------------------------------------
---------------------------AATCGTAGCTAATTTGGTGGGCGCGCATCACGTGGAGCGCTGGAAAACTGGCA
CTCTGCT------GTACTC-------------------------------------------------CT----------
GCGTTAATGCACCGGCCAG-----TATTG-------GT---AATGCGCTT--------CTTTCATTAAGATGG--TAATT
AACGTACTAATGGGACCATCATGGACAA-------------GCAGATACGCAAAAGTACATTGGCCCGTCTCG----ATC
GATCGATCCCCCGAGCCCCGAGCCTCGATCACCATAGTGATGCACA--GTAGTAGCGGCTACACAATCACTG--------
TCAC----CGCATGTATTGTGCCGATCACTA-------CAG----TAGTAGCAGCCACAAATCGACGGTGACGCCAGGCT
TTGGCCGG---------TCTGCATGCTC---CCACAA------GCCACAGCAGCTGGCCGGCCGT------------CCG
TCCGTTGGTTACCTGTTCCTTTCGCGGGCATATCACGTACGAGGTACGAG-------TAAAATCCCCTCGATTCGACGGG
CGGACGGGCGCGTCGATCTGCACGGCTGCACCT-AACCGCCCGGCCAATCTGAACCCGCAAACGACCGGTACG-------
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>chr2A_805
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----TCCTGCCTGCGCCCTCGTCCCCTCCTCCGCTATATAACGGGGCCTGG-CATGCCATCCCCGGCACCGGCCACTCAA
AATCCCCAGACTTTCCAGACC------CAAAAT-CCCACCTCCCT----CCTCCGATCCC-CCTCTTCTTCCACTCGTTC
CGTTTCTTGCGACCGAGGGGATCGTCGATCGATCGATGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATGATCGGG
GCGAAGGAGGAGCGGGTGGTGGGCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCGGTGGTGGCGACCGA
CGTGGAGAGCGAGCGGCGCATCCTGTGTCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCTTGCACCAGGTGCTTCC
GCCGCCTCGTCACCGTCTACAGCTAGC------TCGGGCTTCTTCTATTACCG--ATCCATCCATGGT------------
-----GACG---TACGGAGGGAATCAGATAATCCGCTCGAGTTCTTTGGTTCTTC-------------------------
-------------------------------------------------------------------T------------
CGGCCCTAGAGTAGCTTGCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGTGTTGATTCCTCTAGTT-----------
-----TC-------------------------------------------------------------------------
-----------------CTAGTAGCTAATTTG--------------------------GTGAAGCGCTGGAAAACTGGCA
CTCTGCT------GTATC-----------------------TTGCAGTAAGCTCTCTGTCAATGGT-----------TCC
GCTTTAATGCACCGGCCTG-----TATTGGAAATCTCT---AATGCGCTT--------CCTTCATTAAGATGGTACAATT
AACGTACTGATGGGACCATCATGGACAC-------------GCAGATACGCAAAAGTACATTGGCCCGTCTCC----ATC
GATC-----------CCCAAAGCCTCGATCACTGCAGTGATGCACA--G---------CTACGGAATCACTG--------
TCGCTGCATGCATGTATTGTGCTGATCACTA-------CTGTACATAGTAGCAGCCACAAATCGACGGCGACGCCAGCCT
TTGGCCGG---------TGTGCATGCTC---CCACAACCACAAGCCACAGCAACCGGCCGGCCGT------------CCG
TCCGTTGGTTACCTGTTCCTTTCGCGGGTATCCCGTAC------------------------------------------
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>chr2B_810
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---------CCTGCGCCCTCGTCCCTTCC---GCTATATATGGGGCCCTGC-CATGCCAT-CCCGGCACCGGCCACTCAA
AATCCCCAGACTTTCCAAAGC------CAAAATCCCAACCTCCGT----CCTCCGATCCC-CCTCTTCTTCCTCC-----
---TTCTCGCGGCCGAGGGGGTCGTCC----ATCGATGGCGACAATGGGGGCGGGCGAAGCAGTGAAGATGATCTGCGGG
ACGAAGGTGGAGCGGGTGGTGGGCACGGGCAAGGCGCCCGGTGCTTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACCGA
CGTGGAGAGCGAGCGGCGCATCCTCTGCCTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCC
GCCGCCTCGTCACCGTCTACAGCTAGCCGGCCC-CAAGCCGCTGGTGGTGGTGCCACCGATCCATCCATCCTTCCATCAA
CTAGCGATGTACTACCAAGCAAATCCATTAATCCGCTCGACTTCTTTGATTCCT--------------------------
------------------------------------------------------------------GTTGGCCGTGCTTA
CGGCTCTAGAGTAGCTTGCTAGCCTGGATAATGTAATGTCATGTTGATCCTGTCTTAGTTCTTCTACAGTGTTTCTAGGG
AGTACTC-------------------------------------------------------------------------
-----------------CTAGTAGCTAAATC-TAGCTAATTTGGTGGCCGCGCATCACGTGAAGCGATGCAAAACTGGCA
CTCTGATGTACCAGTATC-----------------------TTGCAGTAAGCTCTCTGTCAATGGTGGCGGGGCACCTCC
GCTTTAATGCACCGGCCTGGCCAGTATTGGAAATTCGT---AATGCGCTT--------CCTTCATTAAGATGG--CAATT
AACGTACTGGTGGGACCATCATGGACAC-------------CCAGATACGCAAAAGTACATTGGCCCGTCTCC----ATC
GATCGATC-------CCCCAAGCCTCGATCGCTATAGTGATGCACA--GTAGCAGC---CACGCAATCTCTG--------
TCAC----CGCATGTATTGTGCCGATCACTA-------CAG----TAGTAGCAGCCACAAATCGACGGTGACGCCAGGCT
TTGGCCGG---------TGTGCATGCACCGGCCACAA------GCCACAGCAGCCGGCCGGCCGT------------CCG
TCCGTTGGTTACCTGTTCCTTTCGCGGGCATATCACGTACGACGTACGAG-------GAAAATCCCCACGATTCGACGGC
CGGACGGGCGCGCCGATCTGCACGGCTGCACCTTAGCCACCCGGCCAAACTGAACCCGCAAACGAGCGG-----------
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>chr2D_851
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-----------------------------------------------------ATGCCATCCCCGGCACCGGCCACTCAA
AATCCCCAGACTTTCCAAGCCCAAAATCAAAAT-CCCACCTCTCT----CCGATCC-CCC-CTTCTTCCTCCTCTCGTTT
CGTTTCTTGCGGCCGAGGGGATCGTCGATCGATCCATGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGG
GCGAAGGAGGAGCGGGTGGTGGCCACGGGCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGCCCCGTGGTGGCGACCGA
CGTGGAGAGCGAGCGGCGCATCCTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTACTGCACCAGGTGCTTCC
GCCGCCTCGTCACCGTCTACAGCTAGTAGCTCATCAAGCCTCTCCTCATGCCG--ATCCATCCATCCATCCATCGATCAA
CTAGCGTGCG----------------------------GAGTTCTTTGGTTCTTA-------------------------
------------------------------------------------------------------GTTGGCCGTGGTTA
CGGCCCTAGAGTAGCTTGCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGAGTTAATTCTTCTA--------------
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>chr2D_851
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-----------------------------------------------------ATGCCATCCCCGGCACCGGCCACTCAA
AATCCCCAGACTTTCCAAGCC------CAAAAT-CCCACCTCTCT----CCGATCC-CCC-CTTCTTCCTCCTCTAGTTT
CGTTTCTTGCGGCCGAGGGGATCGTCGATCGATCCATGGCAACAATGGGCGTGGGCGGAGCTGTGAAGATGATCTGCGGG
ACGAAGGTGGAGCGGGTGGTGGGCACGGGCAAGGCGCCCGGCGCGTGCCCATCCTGCGGCGGCCCCGTGGTTGCCACCGA
CGTGGAGAGCGAGCGGCGCATCCTGTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCAGGTGCTTCC
GCCGCCTCGTCACCGTCTACAGCTAGC------TCGAGCTTCTTCTAGTACCG--ATCCATCCATGGATCTATCGATCGA
CTAGCGACG---TACGGAGGCAACCAGATAATCCGCTCGAGTTCTTTGGTTCTTC-------------------------
-------------------------------------------------------------------T------------
CGGCCCTAGAGTAGCTTGCGAGCCTGGCTAATGTAATGTAATGGTGACTCTGTGTTGATTCTTCTGGTT-----------
-----TCT------------------------------------------------------------------------
------AGGGAGTACTCCTAGTAGCTAAATCTAAGCTAATTTGGTGGGCGTGCATCGCGTGAAGCGCTGCAAAACTGGCA
CTCTGCT------GTATC-----------------------TTGCAGTAAGCTCCCTGTCAATGGTGGCGGGGCACCTCC
GCTTTAATGCACCGGCCAG-----TATTGGAAATTTGTAGCAATGCGCTT--------CCTTCATTAAGATGG--TAATT
AACGTACTGATGGGACCATCATGGACAC-------------GCAGATACGCAAAAGTACACTGGCCCGTCTCGATCAATC
GATC-----------CCCAAAGCCTCGATCACTGCAGTGATGCACA--G---------CCACGGAATCACTG--------
TCGC----TGCATGTATTGTGCTGATCACTA-------CAG----TAGTAGCAGCCACAAATCGACGGTGACGCCAGGCT
TTGGCCGG---------TGTGCATGCTC---CCACAA------GCCACAGCAGCCGGCCGGCCGT------------CCG
TCCGTTGGTTACCTGTTCCTTTCGCGGGCATATCACGTACT---------------------------------------
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>chr2B_860
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--------------------------------------------------------------CCGCCACCGGCCACA-AA
AATCCCCAGACTTTTCAAAAGCCAAGATCG--T-CCCACCTCCCT----CCAATCC-CCATCTCCTTCCTC---------
----TGGCGCGACCGAGGGTATCGTCC----ATCGATGGCAGCAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGG
GCGAAGGAGGAGCGGGTGGTGGCCACGGGCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACCGA
CGTGGAGAGCGAGCGGCGCATCCTCTGCCTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCCGGTGCTTCC
GCCGCCTCGTCACCGTCTACAGCTAGTCGCTCCTCAAGCCTATCCTCCTG------CCGATCCATCCATCCATCGATCAA
CTAGCGTGCG----------------------------GAGTTCTTTGGTTCTTACTCCCTCCGTTCCAAAATAGATGAC
CCAACTTTGTACTAAAGTTAGTACAAAGTTGAGTCATCTATTTTGGAACGGAGGGAGTACTTCTTAGTTGGCCGTGGTTA
CGGCCCTAGAGTAGCTTGCTAGCCTGGCTAATGTAATGTAATGGTGATTCTGAGTTAATTCTTCTA--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
---------------S------------------------S------SSS-S---------------S------------
-----S---------------------S----S-S--S-S-S---SSSS------------------S--S---------
------S-------------------------------------------------------------------S-----
------------------S--------SS---------------------------S-----------------------
---------------------------------------------------------------------------S----
--------------S---------------------------------S-------------S---S--------S----
S----SS-------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-------S---------------S-----------------------S-SSSSSS--SS
SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS--------S-S--SSSSSSSSS-S--S-S-SSSS-------------S---S----S-S--SSSSSS-S-----
--------------S-S-SSSSSSSSSSSSSSSSSSSSSSS----------------S-----------S----------
--S--------SS--S---------------------S------------SSSSSSSS----------------------
-------------------SSS-S-SSSSSSSSSSSSSSSS----------------------SS-----S---------
--S-------------S----------------------S---S--SS------------S-S---------SSSSSSSS
------------------------------SSSSSSSS----------S---------SS--SSS----------S----
--------SSSSSSSSS---S--------------------------------------------SSSSSSSSSSSS---
------------------------SS------------------SSSS--SSSSSSS--------S-------S------
-------S--------S----S-SS--------------S--SS-----------S-------------S---SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_390
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--------------------------------------------------GAGACGTACGCGAGCATGTA----------
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>reverse_2388
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-------------------------------------------------------------------CGAGTTCCAGGCA
CCAAGAT--------------------------------
