>input_sequence_87052
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-----------------------------------------------------ATGTTCCTGGTGGGGATAGTGGCGGAG
CTGCTGGAGGACTACACGATGCTGCTGGCGGAGGTGCTGGAGCAGCTGCTCAACGGCGCGCCGTTCCCCCGCCGGATGCG
CACGCTCATGCTGCGGAGCCTCCCCTTCGTGGCCCCGCCGCTCGCGCCGCCGCCGCCGCCGCACGCTCTCCGCGTCACCA
CCCGAGGCTGA---------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G394600
TCAAATAATGTGAACAGTTTATCTTTACTCTTCTGTTATGTTCTTAGTTTTGTGCCAAATAGCGACTTGTGACCTGTGAC
CATCCCCTGTGTTCTATCCTGCCAATGCTACGAAGATTATGAGAAATTTTTAGCTTGCCTCAGCTATTTGTGTACATTCT
TCTATCAATATGGTCAGCCAATATACGGTGCACAATCAGTTCACAAAGGGCGGCCCAGGCATGTACGCATGCGTGATTTT
TGGAAAGAGGAGGGCCCTTTTGCAAATTGCCAGGGGTGAGCGGCTGTGCCACGACGCGGCCAGCGAGGAGGCACCATTTG
TCCACTCCTGATTGGATGTGGATTAAAACTTTGCTCACAATGTGAGTTTAAGGGTGGGTTGATCATCTTTTGCAAATTTG
TGAAGTAAACCATCACATACATTACAAGTTTGTGGGTCTGCTCTTGCCTCTAACAAAAAAAAGTGATGGCCGATGTGGCC
GCAAGTCCCACGATGTGGACCAAGCGTCCCATTTACCTCGTGAGCCACAGCCCGTGTCAGAATTCCAGCGGTGGTCGTCG
TATA-ACCTACGAGCGAGCGATACCGGTTTGCCGGTTTCGGGAACCGCAGCGCGAGACACGGCGGCTAGGCTATCGACCA
AGTTCACGGCAGCAGCACCC---ACTCCGCCGCAGCTGATGTGGGCCGTTTCTCCGCCGCAGCACACCATCGCCGCGGGA
ACGTAGCCGTTCCTTCTGCCGGATTCTAGCACATACCACAGGCGGGCCGCCATCCCGTCACATCCGAAACCAGCGTCCAC
TGCCCACAGGACACGACGCGCCGGAACCCGTTCCCTTTTAAAAGCCGCGGACGCCTGCTCCCCTCT-----CGGACGGTA
ACAAGTCAACACCACATCCGCATCCACATCCAAAGTACT----ACACACAAATCCCGAGCTAGCGAAAACCGATTCGTTT
TCTTACCGCACCGCGAAGCCGAGGCGAAGGCGAAGGCGAACCCATCATCGGCGATGTTCCTGGTGGGGATAGTGGCGGAG
CTGCTGGAGGACTACACGATGCTGCTGGCGGAGGTGCTGGAGCAGCTGCTCAACGGCGCGCCGTTCCCCCGCCGGATGCG
CACGCTCATGCTGCGGAGCCTCCCCTTCGTGGCCCCGCCGCTCGCGCCGCCGCCGCCGCCGCACGCTCTCCGCGTCACCA
CCCGAGGCTGATCGATCCACCCGGCTGCCTCTCTGCTAAGCCTCATCCGATCCGATAGGTCCATCCGGATCGTTTGTTTT
GCCTCTTTGGGTTCATTCTGTTGATTCGTTTGGTGTACAGACCGACT--------TGTACTATGATGTCTCTTACTGTAT
CATC--CAGCGGTGGAAATGAGACCGATTTTTCCATGGCTCCTTT-TAAGTAGTTCTGGTGAGAAGATCAAGCGGCCTTT
CAGTTTGAGGTCTTTTTTCGTGTGCATAATGCA---TACTAGTAGAACTGTGGATGATGTCTTTTGCTGGATGGGAACAT
GAGTTTATGACTGATTGTCTGGACGAATGGATTTTGTCGATCCTTTTTAAACACGACACTAGGTGACCAGAGATGGCCAC
TGAAAAGAATCGCTGGACTGTTGTGGTTGGTTTGCGACACGTAACGATGGATGATTGGCTCTGTTTGGCTT--CTTTGGT
CGGCCACAATTTAGGGTTTATACGCGATACACGTCATATGAGTGTTTTCCATCAGTGACACATTTCGTGACACACTGGTT
GTCTGGTTCGGTGATCAAATGAAGTACTCTCT------------------------------------------------
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----------------------CCGTTCCAAATACATCCGTATCTAGACATATCTAAAACAAGAATTTTGAGACGAAAGA
AGTATATGTCTAGATTGAGAGATTGCGTCGCTACCCTATTATCCACATCTTC----------------------------
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--------------------------------------------------------------------CTCTAAGTTGTG
GATTGGTATTGAAAACCCATGCGACAAGAGATTTATATGAAACTTTTTTATGCTTGCACGGCCATTTCTATGGGTAATGG
AGCCAAGACGCCTTTCTGAAACTCGCCATGCTTGGATGGCAAGCGGCCATTAGATATTGCCCCCATGTTTTTGCCGCCTC
AAGCAGCAAAAAATGAACTGTTCGCCGGGCCTTGGCCGACAATGCCTGGATTCGACGGATTAAACTTAACACAAACTTCT
CTGTGAGGCACATTCGTGAATACATCGACCTTTGCACTAAGCTCTCGTTTGTCCATCTTGAGGACGAGGTGGA
>chr2B_457
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--------------------------------------------------------AAAAAAGTGGTGCCGACGTGG---
GCAAGTCCGACGATGTCCAGCAAGCGTCCCATTTACATCGTGAGCCACAGCCCATGTCAGAATTCCAGCGGTGGTCGTCG
TATTCACCTACGAGTGAGCGATGCCGGTTTGACGGTTTTGGAAACCGCTGCGCGAGACACGGCGGCTAGGCTATCGAGCA
AGTTCACGGCA--------------------GCAGCTGATGTGGGTCGTTTCTCCGCCGCAGCACACCATCGCCGCGGGA
ACGTAGCCGTTCCTTCTGCCGGATTCTAGCGCATACCACAGGCGGGCCGCCACCCCGTCACATCCAAAACCAGCGTCCAC
TGCCCACAGGACACGACACCACGGAACCCGACCCCTTTAAAAAGCCGCGGACGCCTG-----CTCT-----CGGACGGTA
ACAAGTCAACACCACATCCAGAG---------------T----ACACACAAATCCCGAGCTACCGAAAACCGATTCCTTT
TCTTACCGCACCGCGAAGCCAAGGCGAAGGCGAAGGTT-----ATCATCGGCGATGTTCCTGGTGGGGATAGTGGCCGAG
CTGCTGGAGGACTACACGATGCTGGTGGCGGAGGTGCTGGAGCAGCTGCTCGACGGCGCGCCGTTCCCCCGCCGGATGCG
CACGCTCATGCTGCGGAGCCTCCCCTTCGTGGCCCCGCCGCTCGCGCCGCCGCCGCCGCCGCACGCCCTCCGCGTCACCA
CCCGAGGCTGATCGATCCAGCCGACTGC--CTCTGCTAAGCCTCGTCCGATCCCATAGGTTCATCCGGAT---------T
GCCTCTTTCGGTTTATTCTGTTGATTCGTTTGGTGTACAGACCGACTGTACTACTTGTACTATGATGTCTCTTATT----
-ATC--CAGCGGTGGAAATGAGACTGAGTTTTCCATGGCTCCTTTGTAAATAGTTCTGGTGAGATCAAGG---GGCCTTT
CAATTTGAGCTCCTTTTTCATGTGGATAATGCATACTACTAGTAGAACTGTGGATGATGTCTTTTGCTGGATGGGAACAT
GAGTTCATGACTGATTGTCTGGACGAATGGATTTTGTCGATCCTTTTTAAACATGACACTAGGTGACCAGAGATGGCCAC
TGAAAAGAACCGCTGGACTGTTGTGGCTGGTTTGCGATACTTAACGATGGAT-----GCTCTGTTTGGCATTCCTTTGGT
CGGCCACAATTTAGGGTTTATACATTATACACGTCGTATCAATATTTTCCATCAGTGACGCATTTCGTGATACACTGGTT
GTCTGGTTCGGAGATTAAATAAAGTTTACGCCTTTGGCTACAGGAATGTTAACGTTAACGTAATCAGGTCACAACGTTTT
AGGGGGTGTAATGATTTTCTTCCTAGTTTGTTTGGTTCGTGCGGGGTAAAGGAATTGGATACCATTGCTCCAATGCATGA
GGAATATCTCTGCCCGATGCCCTGTTGCTCGCCGGCCACCCTTCTCCCCGTCAACGACCTGCTCGGCCTGGCCGCCCTGA
GCATGCGCGCCGCCGTTCTCAAGCACCGCCGGCCGCCGCTGAGGATGCGCGCCGCCGGTCAGTCCCCGATCCGCGCGCCG
CTGGGGCCGATCTCAGGCACCGCCAGCCAGATCCCAATCTTCGCCCGCCGCTGTGGACGTGCTTTTCCAGCCCCCAAGAA
AAGAATCGAACAGCAGCCAGAAAAACGCATGAGAAAGAGGGAACAGACAACAGGCAGATGTGGGCGGAATCAGATTTGTA
CAACGATGTAATCTGATTACACGGGATCTCATTACGGAGAAGTTGAAACAAACAGAAACTAACGTATTCAGATCCCGTCG
TTATCAGGTTACTTACAGATAGCCGAACCAAACACCTCCCTAGT------------------------------------
--------------TTCAGGGATTGGGTCGCTGCCCTGTTATCCAAATCTTCCTCGGTCCTCAACAGGATCTCTGGCGCT
CCCATTCTTCATAGCAGGGGCCTTCGGCAGTGGGGGTCTTCTATCCCCGCTGCTCTTTGTGTTGGCCATCGATCCTCTCT
TTGACGTGGCCATTGAGCAACGACTACTTCACAAAATTGGTGGGAGGGGTTCCACTTTCTGCACATCGCTCTACGTGGAC
GACACCGCTATCTTCGTTGCCCCCATTAAGCAGGACATATAAAATTTGGCTACCATTTTGAGTTTCCTTTGGAGAGGTGA
TTGGCCTCACCACGAGCTTCCTCAAGAGCTCCATTGTATCCATCTTAATGATATTCTTCAGAGCTTCTTCGCCAAGCGCA
CTTCATTTCCGATCAATAATTTTGGGCTTCCGCTTTCAGTACTAAAAGGCATGCATCATCAACCTCTGGAAGATAAAATT
GCGGTCAAACTCCCCCCTTGGCAGGGTGAGGGACATTACCTCTCGCACTGCGCTAGTCAAATCGGTGCTTACTTCTCATG
CCATCTATTACATCACCTGCTTGTCGTCTCCTCTGGGGGAAGAAGTGTTTACAAGATCGAGCGTGCTTTTTTATGTTCGC
CTAGTGACAAGACCTCCGAAGCCAAGTGCAAGTTAAATTGGAAATTTGTTTGTTGACCGACCCATTTTAGGGGTCTCTAT
ATGTTGCACCTGGATAAATTCGCAAGGGTCCTGCGATTGCGATGACTTTGGTTAGAGTGGACCGACAACTCTAAGTTGTG
GATTAGTACGGGAAACCCATGCGAC--GAGATTGACATGAAGCTTTTTTATACTTGCACGACCATTTAAGTGGGCAATGG
AGCCAAGAAGCCTTTCTGGGACTCGGCATGGTTGGATGGCAAGCGGCCATTAGATATTGCCTCCCATG------------
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>chr2D_469
GCCAT---------------------------------------------------------------------------
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-------------------------------------------------------------------------GTGG---
GCAAGTCCCACGATGTCCAGCAAGCGTCCCATTTACCTCGTGAGCCACAGCCCGTGTCAGAATTCCAGCGGTGCTCGTCG
TATC-ACCTAGGAGTGAGCGATACCGGTTCGACGGTTTCGGAAACCGCTGCGCGAGACACGGCGGCTAGGCTATCGAGCA
AGTTCACGGCAGCAGCACCACCGACTCCGCCGCAGCTGATGTGGGCCGTTTCTCCGCCCCAGCACACCATCGCCGCGGGA
ACGCAACCGTCCCTTCTGCCGGATTCTAGCGCATACCACAGGCGGGCCGCCACCCCGTCACATCCAAAACCAGCGTCCAC
TGCCCACAGGACACGACGCGCCGGAACCCGACCCCTTTTAAAAGCCGCGGACGCTTG-----CTCACCTCCCGGACGGTA
ACAAGTCAACACCGCATCCACATCCACATCCAAAGTAGAGTACACACACAAATCCCGAGCGAGCGAAAACCGATTCCTTT
TCTTACCGCACCGCGAAGCCAAGGCGAAGGCGAAGGTTGTCG-----TCGGCGATGTTCCTGGTGGGGATAGTGGCGGAG
CTGCTGGAGGACTACACGATGCTGGTGGCGGAGGTGCTGGAGCAGCTGCTCAACGGCGCGCCGTTCCCCCGCCGGATGCG
CACGCTCATGCTGCGGAGCCTCCCCTTCGTTGCCCCGCCGCTGGCGCCGCCCCCGCCGCCGTACGCCCTCCGCGTCACCA
CCCGAGGCTGATCGATCCAGCCGACTGC--CTCTGCCAAGCCTCGTCCGATCCGATAGGTCCATCCAGATCGTCTGTTTT
GCCTCTTTCGGTTCATTCTGTTGATTCGTTTGGTGTACAGACCGACTGTACTAGTTGTACTGTGATGTCTCTTGTT----
-ATCCACAGCGGTGGAAATGAGACCGATTTTTCCATGGCTCCTTTGTAAATAGTTCTGGTGAGATCTGGG---GGCCTTT
CAGTTTGAGCTCCTTTTTCATGTGGATAATGCA---TACTAGTAGAATTCTGGATGATCTCTTTTGCTGGATGGGAACAT
GAGTTCATGACTGATTGTCCGGACGAGTGGATTTTGTCGATCCTTTTTAAACACGACATTAGGTGACCAGAGATGGCCAC
TGAAAAGAACTGCTAGACTGTTGTGGCTGGTTTGCGCTACGTGACGAGGGATGATTGGCTCTGTTTGGCATTCCTTTGGT
CGGCCACAATTTAGAGTGTAAACATGATACACGTCATATCAGTGTTTTCCATCAATGACACATTTCGTGATACCCTGGTT
GTCTGGTTCAGTGATCAAATGAAGT-------------------------------------------------------
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>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S--S-SSSSSS-SSS
----------------SS-S------------------------------------------------------------
---S----------S----------------S---------S------S----------------------------S--
-------------------S------------------------------------------------------------
------------------------------S---------------------S------------S--------------
------------------------------SS-------------------------SSSSS------------------
-------------------S-----------------S--------------------------------------S---
--------------------S---------------SSSS-SS-------------------------------------
------------------------S-------------------------------------------------------
------------------------------------------------------------------S-------------
-------------------S---S----SS--------------S----------------------------S------
--------S-----------------------------------------------------------------S-SSSS
S------------------------------------------------S--------------SS-SSSSSS-------
---------S--S------S----S-------------------------------------------------------
-----S--------------------------------------------------------------------------
---------S----------------S----------S-------------------------------S----------
-----------------------SS--------------S------------------------------S---------
-------------------------SSS-S-S------------------------------------------------
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-------------------------SS-----S--S---S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--S--S-----S------S----S-------S----------------------------------
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----S---SS-S-------------SS------S-S-----S---------S--------S------SSS----S-----
--------S---------SS-----S----S------------------------------S--SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_324
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----------------------------------------------------------------GAGGAGGCACCATTTG
TCCA----------------------------------------------------------------------------
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>reverse_3493
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----------------------------------------------------CCATCTTGAGGACGAGGTGG-
