>input_sequence_87049
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----------------------------------------ATGCTGGTGGTGGAGCTGGGCATATGGGTCATCCCGCTGA
CCCTCGTCTTCGTCCCGTGCCGGCGCATCGTCCTCCTCCTGTCCAGGCTCCAGGAGCTTCGCCGGACCATGATGCGGCCG
AGGCTGGTGATCACCTCGCGGGAAGAGGACATGTGGAGCCGCCTGTCCAGGCTTAACTCCATGGCCTTCATGCTGTGA--
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>chr1D_1_TraesCS1D01G188000
TGTTTCCAGAGACTTTTTGGTGCAGGGACCAGAAAAAGTCCCTTTGAAAGACTTCTCAATCAAATAGGAGGGACTACTAG
GGACTAAAAGTTGCTTTTTAGGACTTTTTCAACAATGCCCCTCCCTGCACCCATTGCCCCGCCGTCCCATGGTGTTGTTT
GGTTGTTATTTTTCTGTATACTAGGGGTAACATTGTCATTTAATAACCTCTAGGGAGGGACTAGGGACTTTTTAGTTCTG
GAAACAAATTTTTTAGAGACTATGGACTTTTTAGTTGGGACTAGAATGAACCAAACAGGGCCTCAGGCTACCAAAGGCAG
TGAAACGACAAGGCAGCTGATGACGCTGAATGCACTAGTTAATTTCAGATCACACACCGGTCACCGTCACGTGGAGTGGG
AAGGGAAACCACCTAGCCTACCTCACTGAGCTAGGACACAGCACATGCCGCGGTGGCAAATTTGACAAATTTGACCTATA
AACGAAATCAAATCACAGAATGAACTATTCGTGAAACTATTTCACGCGGCTGACCTTTTTGTGTGACGCCCGACACGAAG
GCGCCACACTACACTGTGCAACGTCTCACAGATAGGCGCTACACGGCCAGCGTCGCACCCGTGTAATCAGAAAATTACTA
AATCAGTGTGCAGCGCCTGAGAGCTAGGCGCCACACTATACAGTATAGCGCCTAGCTCCTAGGCGTTGCACTAGTGCAGC
GCCTGAGAGCTAGACGCCACGGGTCAGCCGCGTGAAATAGTTTCACGGACAGTTCATTTTGTGATTTGATTTCATCTATA
GGTCAAATTTATCAAATTGCCCCGCCGCGGTAGATGGCGCGCGCATCATATCAGGAAATCAAGGCGGGCCGGATGGCGTG
CCCTCCACTAGAGCCTAGCTAGCTGAGCTCCGTTATATAAAGAGCATGGAGCTAGCGACCCGGTGGGTGCGAGAGCAAAG
CACACTCCCACCATTTTTTTGCAGCAGCGGCGGAGCGAGCATGCTGGTGGTGGAGCTGGGCATATGGGTCATCCCGCTGA
CCCTCGTCTTCGTCCCGTGCCGGCGCATCGTCCTCCTCCTGTCCAGGCTCCAGGAGCTTCGCCGGACCATGATGCGGCCG
AGGCTGGTGATCACCTCGCGGGAAGAGGACATGTGGAGCCGCCTGTCCAGGCTTAACTCCATGGCCTTCATGCTGTGACG
GCGG---------GGTACTATGTGTGCCTGCTTTGCCCCTCTCCTCGTTTGCTGTTCGATGCCAAGTTGTTTTTGCTTCT
TCTTTTCTTAAGCCT----TGTAT----CTGTAATAAGCTCGCGGTAGTTGAGATGTAGTATAAGATGTGTATATA-TTG
GCGTAGCTTGGACTTTGATGTTAGATGC----------------------------------------------------
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-------------------------------------------------ATATACTGGTGTGGTAGAGGCAATGAA----
---------------------------ATTTCTTGGAC---TAGTAGTTTTTGTATTGTTTGACATGAGAAATACTTTAA
CAAATACATACTCCCTCTGTCCCAAAATAAGTGACTCAACTTAACTTTGTACTAAAATTCCTACAAAGTAGGACGGAGGG
AGTATTTCTCTAGAAACAGGCTTTCGTCATA-CTTTACAAATAAAGCAATCATCACATTCATACAACAAATTCAAGTTCA
CGAAGATAGTAACAGAGTCTGCTGG-------------------------------------------------------
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--------GGCATGAGCACAAACACACGC--AAAAAAACATGGAAGAAAACGAAAAAAAGACCAAT---TGGTCGATACC
TCAAGCCTCATGAGGCGAAGCAAGTCGGCATGAGGCAGCAGTCATCGTGTTCGTCATGTGGACAAACCGATCGCGATCCC
TCTATCCAGATAGCGAGTTTCGGTGCTGCAAGAATACAAGGAATTTGAAAATAGAGATAGAGGCCCACCTAAGAAAGACC
TGCTCAATAACCATCTTGCTACGCGTCGTCCACAGGGTCCAAACTAACGCTACATAACAAGCTAGAAGAGGCGTCTCCTA
CTCCCAGTTTGGTTGTCCCAGGTTTAAAGAAACACGAGTAGGTCTGAGGCCTCCTAGTCGGGCCCCAGAGCCTCACGGAT
AAAGCACCAAAGTAATCGCGCCGCCGAGAAGAGGGTATGAGTCCATGTCTCCGGCATAGCACAAAGGGGGCACGACCCAT
CCCCAGGGTCATGATGTTTGATCACCTCTGTCCTAGATGGGAGGCAATCTCCCAACAATTGCCATAGAAAGATTCAGCAC
AAGGCACGATATGTCGAGCC
>chr1A_302
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-------------------------------------------------------------CTCAGGGAACCAAAGGCAG
TGAAAGGACAAGGCAGCCTATGACCCTAAATGCACTATTTAATTTCAGATCACACACCGGTCACCGTCATGTGGAGTGGG
AAGGGAAACCACCTAGCCTACCTCACTGAGCTAGGACACAGCACATT---------------------------------
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------------------------CCGCAGTAGATGGCGGGCATATCATATCAGGAAATCAAGGCGGATCGGACGGCGTG
CCCTCCACTAGAGCCTAGCTAGCTGAGCTCCGTTATATAAAGAGCATGGAGCTAGCGACCCGGTGGGTGCGAGAGCAAAG
CACAGTCCCACCATTTTTTTGCAGCGGCGGCGAAGCGAGGATGCTGGTGGTGGAGCTGGGCATATGGGTCATCCCGCTGA
CCCTCGTCTTCGTCCCGTGCCGGCGCATCGTCCTCCTCCTGTCCAGGCTCCAGGAGCTTGGACGGACCATGATGCGCCCG
AGGCTGGTGATCAGCTCGCGGGAAGAGGACATGTGGAGCCGCCTGTCCAGGCTTAACTCCATGGCCTTCATGTTGTGATG
TGACGGCGGTGATGGTACTATGTGTGCCTGCTT-GCCCCTCTCCTCGGTTGGTGTTCGATGCTAAGTTGTTTTTGCTTCT
TCTTTTCTTGAGCCT----TGTATGTATCTGTAATAAGCTCACGGTAGTTGAGATGTATTA--AGATGTATATATATTTG
GCGTAGCTTGGACTTTGATGTTAGATG-----------------------------------------------------
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------------------------------------------------TATATACTGGTGTGGTAGAGGCAATGAAGTGA
AATTAACGTCATGGTTCATCTAGCGGAATTTCTTGGAC---TAGTAGTATTTGTATTGTTTGACATGAGAGATACTTTAA
CAAATACAT-----------------------------------------------------------------------
---ATTTCTCTTGAAGTAGGCTTTCATCCCCGCTTTATAAATAAAGCAACCATCACATCCATACAACAAG----AGTGCA
CGAAGAAAGTAACCGAGTATATTGG-------------------------------------------------------
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--------AGCATCAGCACAAACACGGCGAAAAAAAAACATGAAAGAAAACGAAAAAAAGACCACCAAGTGGTCGGTGCC
TCAAGCACACTGAGGCGTAGTAAGTCGGCATGGGGCAGCAGTCATCGCGTCCATCGTGTCGCCAAACCAATCATGATCCC
TCTGTCCACATATTGAGTTTCAGTGCTGCAAGAATAAAAAAACT-TGAAGATAGAGTCAGAGGCCAGCCTAAGAAAGACC
CGCTCAATAACCATCTTGTTACGTGTCGTCCACAGGGTCCAAACTAACGCTGCA-----------------CGTCTCCTC
CTCCTAGTTTGGTTGGCCTAGTTTTAAAGAAACGGAGCTAGGTCTGAGGCCTCCCAATCGGGCCCTAGAACCTCACGGAT
AAAACACCAAAGTAATAGCGCTGCCAAGAAGAGGGTATGAGTCCATGTCTCCGGGATAGCACAAAGGGGGCACGATCCAT
CCCCAGGGTCCTGATGTTTGATCACCTCTGTCCCAGATGGGAGGCAATCTCCCAACAATTGCCATAGAAATATTCGGCAC
AAGGCATGATAT--------
>chr1B_824
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-----------------------GCCGCAGTAGATGGCGGGCATATCATATCAGGAAATCAAGGCGGGTCGGATGGCGTG
CCCTCCACTAGAGCCTATGTAGCCTAGCCCCGTTATATAAAGAGCATGGAGCTAGCGACCGA-TGGGTGCGAGAGCAAAG
--CACTCCCACCATTTTTTTGCAGCGGCGGCGAAGCGAGGATGCTGGTGTTGGAGTTGGGCACATGGGTCATCCCGCTGA
CCCTCGTCTTCGTCCAGTGCCGGCGCATCGTCCTCCTCCTGTCCAGGCTCCAGGAGCTTCGCCGGACCATGATGCGCCCG
AGGCTGGTGATCACCTCGCGGGAAGAGGACATGTGGAGCCGCCTGTCCAGGCTTAACTCCATGGCCTTCATGCTGTGACG
GCGG---------GGTACTATGTGTGCCTGCTT-GCCCCTCTCCTCGTTTGTTGTTCGATGCCAAGTTGTTTTTGCTTCT
TCTTTTCTTGGGCCTTGTATGTAT----CTGTAATAAGCTCGCGGTAGTTGAGATGTAGTA--AGATGTATATATATTGA
-CGTAGCTTGGACTTTTTTTTTCTCGAATACGCACGAGTGTGCGTACTATATTATAAAGAAGGGATCGGGGTAAAGAGCC
CGTCCACGTTATCGCTACAGATTACATATATACACTGAACACTAACTCCACCCTCCACCCTCCTCTCCTATGTCTACCTA
CGCTCCCCTGCCCACTCCTCCACCTCTGCAAAGAAAGCGTCCATGTCTCCTCGTAATATGCCCGCTTGCTTCCATATACG
GCCCTCTCTGACTACTGCTCGGATGATCCTGTTCTTCGAAGGTGTGGCTCCGTCAAAGACGATCGAGTTGTGATTCTTCC
ATATCTGCCATAGCCCTAGAATGATGATTGCATTTGCATCCCTCTCGGCAGGCCTTCTTCCTCCCTTGTCTTGACACCAC
GCCCCGAGGCTTTCACTCCCAGTAGGTATCCACTCTGGCTTGCGCAAGGGATGGCAGATCGCCGTCCACACTTCCCGCGC
GACAACACACTCGAGTAGAACGTGGTTTATGCTCTCCTCTTCTTGGTTGCACATAGGGCAGCATTCTTGATGGTCCAGTC
CACGTCTTGCTAGCCGATCGGATGTCCAGCACCTGTCTTGGGTTGCGAGCCATGTGAAGAAACGACATGGCGCCGGTGCC
CTTGATTTCCAAGTGAATTCGGCCGTCGGGACGACCTGCCTGCCCCAGGACTTGGCCGCATAGGCGCTCCGCGCCGAGAA
GCATCCGCTAGTTTCCCATGCCCAAGAGATGGCATCATTCTGCGCTGGGACAAGCTCGACTCGTTGGATCATCGTCCACA
ATTGTAGGTATTCACGCAATGATTCAGCAGTGACCTCCGGGCTCACCTGGGTGACCCAGTTGTCGTTCAGAAGCGCCTGG
GAGATAGTGCATGTTCTTCTTATTTTCCTCCTGACTCGCCCGTAGGCCAAGGGTGCGATCTCTCCGATCCGGTGGCCTTC
AAGCCATCTATCTTCCCAAAAGAGTGCAGTATTTCCATCCCCTATGGTCCAGCGAGCAGCCGCGTTGAAGATTTGTGTTG
AGGCTTTGGGCACCCTGATGTCAAACTCTGCCCATGGCCTTGTTGCATCCGATCGTTGTATCCAGGGCCATCTTGCTTGC
ACCTCCTTGTTCATCCATGCTAGGTTGGGGATGCCTAGTCCACCCGCCCACTTGGGGGCGCATACCGAATCCCAAGCGAC
CGCGCAGCTGCCACCGGACGAATTCGCCTCCGCGCACCAAAGAAAACTGCGGCATATTCTGTTCATTGCTGAGACTGTCT
TCCGCAGGAGGTCGAGTGCCATCATCGCATGTAGCGGTATCGCACACAACACAGATTGTACAAGGAGCATTCTTCCACTC
TTTGGCATCTTCGTTGCTTTCCACTTTGGCAATGCCATGGCAAGTTGATCCACAAGGCCTGATAACTGAACATGGGACTG
TTTTCGGAGGGTGAGCGGCAATCCAAGGTACTTGCACGGGAAGGCACCTCTCGGGCACCCAAGTGCCCGCTCCACTCTTT
CCATGGTCTCGGCAGAGCATCGTATAGGATAGACAACACTTTTTGCAAGATTGACACGGAGGCCTGATGCCTCACCAAAC
AGAGTAAGAAGTGATGCGCAGGTGTTCAAGTCCCTCTCATTTGTCTTGAGGAAGATCATTACGTCGTCAGCGAACATCGA
GAGGCGGTGACGCAGTCCAGTTCTTGCCAAGGGAGCCAGCAAGCCCCTAGCGGTCACGAGCTCAAACATGCGGTGTAGGG
GCTCCATGATAAGGATGAATAGCATTGGGGATAATGGTGCACCTTGCCGTAAGCCCATGGTGTTGTATATTGGTCGATCC
GGCATATCGTTGATCATGATCCTCGTTGATGTGCTTTCCAGCAATCCACAGATCCACGTGATCCATCGCTCCCCAAAACC
GGCCTTGCGCAGCACTTCTAGTAGGAAAGGCCAATGCACCGAGTCGAAAGCCTTTGATATATCAAGCTTGAGCATAATTG
CCGGGCCCCGCAGGGTGTGTAACCTCCTTGTCGTGCATTGGACGAGCATGAAGTTGTCGTGGATCGAACGTCCCCGCACG
AAAGCGCTCTGGTGGTTCCCCACAATGGAAGGAAGATCCACGACTAGCCGCGTGGCCAGAGTCTTGTCAAAGATCTTGAT
CGCGCTATGGACCAAGCTCACCTGTCGAAAGTCGCGGATATCCACTGCTCCATCCTTCTTGGGAAGCAGGGATACAATCG
CCTTGTTAATTGCATGCATCCCTCTCATGTCTCCTTGGTGAAAAGCATGAAGTGCCCTCATTAAGTCCTCCTTGATTATA
GACCAGCAAGTTGCAAAAAATCGTCCTGGACTGGTAGTAGTTTTTCTATATATACTGGTGTGGTACATGCAATGAA-TGA
AATTAACTTCATGGTTCATCTAGCTGAATTTCCTGGACTGGTAGTAGTTTTTGTATTGTTTGACATGAGAAATACCTAAA
TGAATACAT-----------------------------------------------------------------------
---GTTTCTCACTAAACAGGCTTTCGTCATA-CTTTATAAATAAAGCAACCATCACTTCCATACAACAAATTCAAGTCCA
CGAAAAAAGTAACAGTCTGATGGAGCATGAGTAGGGATGCAAGCGGGCATCCCGCAAAGTCCCACATAAGTAGAGAATTA
GTTTAAATTGAACTAAATCTGAAAGGAGCAGCTATAACTAAAGTAAATCTGTTTTGCATGTGGAGCGGAGCGCCACTCTG
CACCCCTAGGCATGAGCACAAACAT-GCGCAAAAAAAACATGGAAGAAAAAGAAAAAAGGCCAAG---------------
----------TGGGGCGAAGCAAGTCGGCATGAGGCAGCAGCCATTGCGTCCATCATGTGGCCAAACCGATCGCGATCCC
TCTGTCCGGATAGCGAGTTCCAGTGTTGCAAGAATACAAGGAATATGAATATAGAGTTAGAGGCCC--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SS-----------
-----S-----------SS-----S--S---------S-------------------------------S----------
----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----S----------S--SS------------------------S-----------
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-------------------------S------S------S----------------------------------------
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---------------------------------S-----------------S----------------------------
---------S---------------------------------------------------SS------S----------
---------------------------S----------------------------------------------------
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---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------S-------------------------S-----------S--------S------------------S--
------S-----------S-SS----------------------------------------------------------
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-------------------------SSSS-----------------------------------SS---------S-S--
------SSSS-------------------------------------S--S-S--------S------------------
---S-----------------S----------------------S----S------S---------S-------------
S-----------------S----S---------------------------S--SSSSSSSSSSSSSSSSS--------S
----S----------S--S--S-----------SSSSS----------------S-S--------S---S----------
---S------------S----S---S----------------------------S--------------------S----
----------S----------------------S------------------------------------S----S----
------S-----SSSSSSSS
>forward_551
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---------------------------------------------------GACCTTTTTGTGTGACGCCC---------
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>reverse_4480
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-------------------------------------------------------------------------------A
CTCCCAGTTTGGTTGTCCC-------------------------------------------------------------
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