>input_sequence_87030
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--ATGGGAGGGAGCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCG
AGGAAGGTGCGGCCGAGCGACGAGGACGGGCTGTGGTACGTCGGGGAGCGGGACGTCGACAGGAAGGCCACGGAGTTCAT
CGCCAGGTTCCACGCCTCCGCCAGCTACGTCGAGGCTACCTAG-------------------------------------
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>chr7D_1_TraesCS7D01G388200
ACAGAATAAGACAATAACAA--TGCAACAACCAAGTGGTAGAACCGCACAAGACCCGCAAAAAAAGGTCACGGAGCTCCA
ATGCATCTTATTACTGGCATAAT-----TTCTACTTTGGGCAGCAAGTGACCGGCCGCGAGCGCATGCGGCACTGCTTGG
AAATCAAGCAGCGGCTAGCTGTCCTGCAAGT------TGCGCGCGCGCGCGCGCGATTGGTTACGTCTGACGCAGTGTAG
TGATCGATCAAGCACCGCATATATGGAGCTAGGCCAAATCCTGAAGAACGCTAATTAACAACAATATAAAACTGGCCCTG
AAATGACCAAACGTATTAGTGACCCTAAGATGCCGGCTTATCGCCATAAACTTCAAAAGTTTCCCTTATCCGAACAGTCT
CCTTCCTTATCTGAATTACATCATTATCCCAGAAAAAACATATTTTAGTATTTTCTAAAAGCTATTTTTCTACCTTAAAA
CGACGGGCTAGAAACCCAAAACGGCATTTCGCCACAATTATCACCATAATATATTCACGACACTTCAAATCCAGCGACCC
AATCCATGCATGCATTTGCTGATTGTTCGTTGCTCCATCACCTGCTCTGTTCAGACGTCAGGCCTTCAGGTTTCGGAAAA
CAACAAAGCTGGCTGGATAGCAATCTGGACGAGCCGCGCCTGACGAGAGAATCGATCCTTCTCAGTGTGTAGTTTCACCC
TGCACCGTCAGTCTCAAGAATCCTTCAGGTAGCAG---GC-ACGTTGCGCGGGCGTCGC-TCTCCACCGTCCGTCGGATC
GCGGCG-----CGGTGCGGTTCGGAAGAATCCTGTCCGTCCAGCGGGACTCTCCCTCCCCTATAAATCGGGAAGGGCTGG
GCTGGCAGCCCTCTCAACTTAAGCAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGGTCCACGAGCTTGCCGGTGTC
TTCCAACTTCCAAGAAGCAGCCTAGGTTAGGTAGCTTAGTTTAGGAGGAAGCCAGC-------------------TGCAA
GAATGGGAGGGAGCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCG
AGGAAGGTGCGGCCGAGCGACGAGGACGGGCTGTGGTACGTCGGGGAGCGGGACGTCGACAGGAAGGCCACGGAGTTCAT
CGCCAGGTTCCACGCCTCCGCCAGCTACGTCGAGGCTACCTAGGCTCGCTTGATCTTCTGCTGCTTCCGCCGGTGATCTC
CGGGTCCGGCTACGTACCTCAGGCGCCCCGAGGTGGCTGGCCAGTCCGCTTGGTTAATCGGCCATTGA------------
----------------------TTAGTCTTGGTTATTATCTACATTAATCTTTGTGATTAAGGGTGTGTAATTTAAATAT
GTATGTATTCCATAAATAAGAGCAATGGTGGA----GGCATGAGCTTATGTA-----------------------GTCTT
TGTTGTTTGAAAAAAGAAGTTGGTCTTTCAGGTGC-ATATACTTAATTTTCTGAT-------ATTTCAAGTCATCTAGAA
AATAGTTATTTCAGAGTCGATGGAAGCATGCATATGCCTA------CAGTTGCACATAAGAGTTTGATGAACAACTCCCA
GGTTGCGCGTCTCTAAGCTTAAAGTTGCTCATAAT---------------------------------------------
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ACATAAGATGTGCAACCACTTAAT---TGAACGTTAGATAAATAAAAACGAACTTCCAGGATCATTGATAAAATAACTAT
TTCTCATTCAAGTAAAAACATACACTCATATGTTGCTATGTACTTCCA--------------------------------
---------------------------------------GGAGTAATTCTAAATGTATACAGTTGCAGTGATCATATGAT
AGAGCCAATAGGGTTAGTGGCGAAGCCATGAAGATACTTGAGCAGGAGCAAGCCACAAGCCTAGTGAAAATTTTACAAAC
TGCACTCAGATATTTGGATAAAAATCATGTGAATAAGCTCCGAAACTGAGAGTAACAACTTCCTGATTTCAACTTTATTT
GTTTGTGTTGTTATGGTACTGCAATTTACTCAAATTTTAAATAATGCATCTAAAATTTAAACGAACCCTCTATTACTATA
TTGTCCAAGATTTTTTAGCACAATCTCTGCAACACCATATGTAGATTCCTGATCAAACTTTTCGCAAAAAA--AAGGTAG
AAATGACATAAAACCAAAATGTAAACCTTGTCAAAATAGAACTATGT----------------CTGCCATATAGTGGCAA
AGCTCTAGAAACTATATAAATTGTGTGTCAATGTTGGTTTAGAAATGTGCAACTA
>chr7A_1
ACAGAATAAGACAAATAAACAGTGCAACAACCAAGTGGTAGAACCGCACAAGACCCGCAAAGAAAGGTCACGGAGCTCCA
ATGCATCTTATTACTGGCATAATTACTATTCTACTTTGGGCAGCAAGTGACCGGCCGCGAGCGCATGCGGCACTGCTTGG
AAACCAAGCAGCGGCTAGCTGTCCCGCAAGTTGTGCGTGCGCGCGCGCGCGCGCGATTGGTTACATC-GACGCAGTGTAG
TGATCGATCAAGCACCGCATATATGGAGCTAGGCCAAATCCTGAAGAACGCTAATTAACAACAATATAAAACTGGCCCTG
AAATGACCAAACGTATTAGTGACCCTAAGATGCCGGCTTATCGCCATAAACTTTAAAGGTTTCCCTTATCCGAACAGTGC
CCTTCCTTATCTGAATTACATCATCATCCCAGAAAAATTATATTTAAATATTTTT--AAAGCTATTTTTCTACCTTAAAA
CGATGGGCTAGGAACCCAAAATAGCATTTCGCCACAATTATCGCCGTAATATATTCACGACACTTCAAATCCAGCGACCC
GATCCA----TGCATTTGCCGATTGTTCGTTGCTCCATCACCTGCTCTGTTCAGACGTCAGGCCTTCAGGTTTCGGAAAA
CAACAAAGCTGGCTGGATAGCAATCTAGACGAGCCGCGCCTGACGAGAGAATCGATCCTTCTCGGTGTGTAGTTTCACCC
TGCACCGTCAGTCTCAAGAATCCTTCAGGTAGCAGCAGGCAACGTTGCGCGCGCGTCGC-TCTCCGCCGTCCGTCGGATC
GCGGCA-----CGGTGCGGTTCGGAGGAATCCTGTCCGTCCAGCGGGGCTCTCCCTCCCCTATAAATCGGGAAGGGCTGG
GCTGGCAGCCCTCTCAACTTAAGCAAGACAC------------CAGCAGCAGCAGGTCGGTCCACGAGCTTGCCGGTGTG
TTCCAACTTCCAAGAAGCAGCC-----TAGGTAGCTTAGTTTAGGAGGAAGCCAGCACAGCAGCAGGTGACCGGCTGCAA
GAATGGGAGGGACCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCG
AGGAAGGTGCGGCCGAGCGACGAGGATGGGCTGTGGTACGTCGGGGAGCGGGACGTCGACAGGAAGGCCACGGAGTTCAT
CGCCAGGTTCCACGCCGCCGCCAGCTACGTCGAGGCTACCTAGGCTCGGTTCATCTTATGCTGCTTCCGCCGGTGATCTC
CGGGTCCGGCTACGTACCTCAGGCGCCCCGAGGTGGCTGGCCAGTCCGCTTGGTTAATCGGCCATTGATTTGTTATCCCG
CTGCTCTCTTTTTCTAGTTCTATTAGTCTTGGTTAT---CTACATTAATCTTTGTGATTAAGGGTGTGTAATTTAAATAT
GTATGTTTTCCATAAATAAGGGAAATGCTGGA----GGCATGAGCTTCTGTATGTGAATATATGGAGAGATATTGGCCTT
TGTTGTTCGAAAAAAGAAATTGGTCTTTCAGGTGC-ATATACTTAATTTTCTGATTTGCTATATTTCAAGTCATCTAGAA
AATAGTTACTTCAGAGTCGATCGAA----GCATATGCCTA------CAGTTGCACATATGAGTTTGATGAACAACT--CC
AGTTGCGCGTCTCTAAGCTTAAAGTTGCTCATACTCCCTCCATCCGGAAATACTTGTCATTAAAATGGATAGAAAAGAAC
GTATCTAGAACGAAAATACATCTAGATACATCCCCTTTTATTCATTTTGATGACAAGTATTTCCGGACGGAGGGAGCATA
ACATAAGATGTTCAACCACTTAAT---TGACCGTTAGATGAATAAAAACAAACTTTCAGGATCATTGACAAAATAACTAT
TTCTCATTCAAGTAAAGACTGACACTCGTATGTTGCTATGTACTCTCTCCATCCCATAATATAAGAGCGTTATTTTACAC
TAAGAGGTGTCAAAGATGCTCTTATATTATGGGACTGAGGGAGTAACTCTAAATGTAAACAGTTTCAGTGATGGAACGAT
AGAGCCAATAGGGTTAGTGGCAAAGTCGTGAAGGTACTTGAGCAGGAGCAAGCTACAAGTCTAGTAAAAAATTTACAAAC
CGCGCTCAGATATTTGGATAAAAATCATGTGAATAAGCCCCGAAACTGAGAGTAGTGACTTCCTAATTTCAACTTTATTT
GTTTGTGTTGTTATCGTACTGCAGTTTATTCAAATTTTAAATAATGCATCTAAAATTTAAACGAACCCTCTATTACTATA
TTGTCCAAGATTTTTT--------------AACACTACATGTAGATTCTTGATCAAACTTTTGGCAAAAAA--AAGGTAG
AAATGACATAAAACCAAAATGTAAACCT----------------TGT----------------CTGCCATATAGTGGCAA
AGCTCTAGAAACTATATAAATTGTGTGTCAATGTTGGTTTAGAAATGTGGAACTA
>chr7B_5
AATAACCAATTAACC----A--TGCAACAACCAAGTGGTAGAACCGCACAAGACCCGCAAAGAAAGGTCATGGAGCTCCA
ATGCATCTTATTACTGGCATAATTA-----CTACTTTGGGCAGCAAGTGACCGGCCGCGAGCGCATGCGGCACTGCTTGG
AAATCAAGCAGCGGCTAGCTGTCCTGCAAGT------TGCGCGTGCGCGCGCGCGATTGGTTACGTCTGACGC-----AG
TGATCGATCAAGCACCGCATATATGGAGCTAGGCCAAATCCTGACGAACGCTAATTAACAACAATATAAAACTGGACCTG
AAATGACCAAACGTATTAGTGACCCTAAGATGCCGGCTTATCGCCATAAACTTTAAAAGTTTCCCTTATCCGAACAGTGC
CCTTCCTTATCTGAATTACATCATCATCCCAGAAAAACATTTTTTAATA--TTTTTAAAGGCTATTTTTCTACCTTAAAA
CGATGGGCTAGAAACCCAAAACAGCATTTCGCCACAATTATCGTCATAATATATTCACGACACTTCAAATCCAGCGACCC
GGTCCA----TGCATTTGCTGATTGTTCGTTGCTCCATCACCTGCTCTGTTCAGACGTCAGGCCTTCAGGTTTCGGAAAA
CAACAAAGCTGGCTGGATAGCAATCTGGACGAGCCGCGCCTGACGAAAGAATCGATCCTCCTCAGTGTCTAGTTTCACCC
TGCACCGTCAGTCTCAAGAATCCTTCAGGTAGCAG---GCAACGTTGCGCGCGCGTCGGGTCTCTGCCGTCCGTCGGATC
GCGGCGCGGTGCGGTGCGGTTCAGAGGAATCCTGTCCGTCCAGCGGGACTCTCCCTCCCCTATAAATGGGGAAGGGCTGG
GCTGGCAGCCCTCTCAACTTAAGCAAGACAC------------CAGCAGCAGCAGGTCGGT-----------CCGGTGTG
TTCCAACTTCCAAGAAGCAGCC-----TAGGTAGCTTAGTTTAGGAGGAAGCCAGCACAGCAGCAGGTGACCGGCTGCAA
GAATGGGAGGGAGCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCG
AGGAAGGTGCGGCCGAGCGACGAGGACGGGCTGTGGTACGTCGGGGAGCGGGACGTCGATAGGAAGGCCACGGAGTTCAT
CGCCAGGTTCCACGCCTCCGCAAGCTACGTCGAGGCTACCTAGGCTCGCTTGATCTTCTGCTGCTTCCGCCGGTGATCTC
CGGGTCCGGCTACGTACCTCAGGCGCCCCGAGGTGGCTGGCCAGTCCGCTTGGTTAATCGGCCATTGAGTTGTTATCCTG
CTGCTCTCTTTCTCTAGTTCTATTAGTCTTGGTTATTATCTACATTAATCTTTGTGATTAAGAGTGTGTAATTTAAATAT
GTATGTATTCCATAAATAAGAGCAAGGCTGGAGGGAGGCATGAGCTTATGTACGTGAAAATATGGAGAGATATTGGTCTT
TGTTGTTCGAAAAAAGAAATTGGTCTTTCAGGTGCCATATACTTAATTTTCTGATTTGCCATATTTCAAGTCATCTAGAA
AATAGTTATTTCAGAGTCGATCAAA----GCATATGCCTACAGTTGCACTTGCACATCAGAGTTTGATGAACAACTCCCC
AGTTGCGCGTCTCTAAGCTTAAAGTTGCTCATAAT---------------------------------------------
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ACATAAGATGTGCAACCACTTAATAATTGACGGTTAGATGAAGAAAAACAAACTTCCAGGATCATTGACAAAATAACTAT
TTCTCATTCAAGTAAAAACAGACACTCATACATTGCTATGTACTCTTTCCGTCCCATAATGTAAGAGCGTTTTTGACACC
TCGTCGAGGGAGCTAC------------------------------------ATGTATAAAGTTACTGTGATGGTAGGAT
AGAGCCAATAGGGTTAGTGGAGAAGCCGTGAAAATACTTGAGCAGGAGCAAGCTACATGCCTAGTGAAAGTTTTACAACC
CGCACTCAGATATTTGGATAAAAATCATGTGAATAAGCCCTGAAACTGAGATTAGCAACTTCCTGATTTCCACTTTATTT
GTTTGTGTTGTTATGGCACCGCAATTTACTCAAATTTTAAATAATGCATCTAAAATTTAAACAAACCCTCTATTACTATA
TTGTCCAAGATTTTTTTAACACAATCTGCG-ACACTACATGTAGATTCTTGATCAAACTTTTGGCAAAAAAAGAAGGTAG
AAATGACATAAAACCACAATGTAAACCT----------------TCTCAAAATAGAACTATGCCTGCCATATAGTAGCAA
AGCTCTAGAAACTATATAAATTGTGTGTCAATGTTGGTTTAGAAATGTGCAACTA
>SNPs
--------------SS-S-------------------------------------------S------------------
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-----------------------------------------------------S------------------------SS
------------------------S------------SS------S-S------S-------------------------
---S------------------S-------------------S-------------------------------------
S-----SSSS----------------------------------------------------------------------
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---------------------------------------------------S-------------S--------------
-------------------------S------------------------------------------------------
------------------------------SSSSSSSSSSSSS------------------------------------S
----------------------SSSSS-----------------------------------------------------
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---------------------------S----------------------------------------------------
-------S----------S-------------------------------------------------------------
---------------------S---SSSS--------------------------------------------------S
S-------------------------------------------------------------------------------
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------------------------------S--------S---------S------------------S-----------
--------------------S-----------------------SS-S--------------------------------
----------------------------------------------S-----------------S-------SS--S---
---------------------------S-------------------------S--------------------------
S-------------------------------------S---------------S-------------------------
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----------------SSSSSS-SSSSSSS-----S-S----------S-------------S-----------------
----------------------------SSSSSSSSSSSSSSSS------------------------------------
-------------------------------------------------------
>forward_568
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--------------------------------------------------------------------ATCCAGCGACCC
AATCCATG------------------------------------------------------------------------
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>reverse_2338
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-----------------GCACAATCTCTGCAACACCA-------------------------------------------
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