>input_sequence_87023
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----------------------------------------------------------------------ATGGGAGGGA
CCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCGAGGAAGGTGCGG
CCGAGCGACGAGGATGGGCTGTGGTACGTCGGGGAGCGGGACGTCGACAGGAAGGCCACGGAGTTCATCGCCAGGTTCCA
CGCCGCCGCCAGCTACGTCGAGGCTACCTAG-------------------------------------------------
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>chr7A_1_TraesCS7A01G392600
AAATAAACAGTGCAACAACCAAGTGGTAGAACCGCACAAGACCCGCAAAGAAAGGTCACGGAGCTCCAATGCATCTTATT
ACTGGCATAATTACTATTCTACTTTGGGCAGCAAGTGACCGGCCGCGAGCGCATGCGGCACTGCTTGGAAACCAAGCAGC
GGCTAGCTGTCCCGCAAGTTGTGCGTGCGCGCGCGCGCGCGCGATTGGTTACATC-GACGCAGTGTAGTGATCGATCAAG
CACCGCATATATGGAGCTAGGCCAAATCCTGAAGAACGCTAATTAACAACAATATAAAACTGGCCCTGAAATGACCAAAC
GTATTAGTGACCCTAAGATGCCGGCTTATCGCCATAAACTTTAAAGGTTTCCCTTATCCGAACAGTGCCCTTCCTTATCT
GAATTACATCATCATCCCAGAAAAATTATATTTAAATATTTTT--AAAGCTATTTTTCTACCTTAAAACGATGGGCTAGG
AACCCAAAATAGCATTTCGCCACAATTATCGCCGTAATATATTCACGACACTTCAAATCCAGCGACCCGATCCA----TG
CATTTGCCGATTGTTCGTTGCTCCATCACCTGCTCTGTTCAGACGTCAGGCCTTCAGGTTTCGGAAAACAACAAAGCTGG
CTGGATAGCAATCTAGACGAGCCGCGCCTGACGAGAGAATCGATCCTTCTCGGTGTGTAGTTTCACCCTGCACCGTCAGT
CTCAAGAATCCTTCAGGTAGCAGCAGGCAACGTTGCGCGCGCGTCGC-TCTCCGCCGTCCGTCGGATCGCGGCACGGTGC
GGTTCGG-----AGGAATCCTGTCCGTCCAGCGGGGCTCTCCCTCCCCTATAAATCGGGAAGGGCTGGGCTGGCAGCCCT
CTCAACTTAAGCAAGACAC------------CAGCAGCAGCAGGTCGGTCCACGAGCTTGCCGGTGTGTTCCAACTTCCA
AGAAGCAGCC-----TAGGTAGCTTAGTTTAGGAGGAAGCCAGCACAGCAGCAGGTGACCGGCTGCAAGAATGGGAGGGA
CCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCGAGGAAGGTGCGG
CCGAGCGACGAGGATGGGCTGTGGTACGTCGGGGAGCGGGACGTCGACAGGAAGGCCACGGAGTTCATCGCCAGGTTCCA
CGCCGCCGCCAGCTACGTCGAGGCTACCTAGGCTCGGTTCATCTTATGCTGCTTCCGCCGGTGATCTCCGGGTCCGGCTA
CGTACCTCAGGCGCCCCGAGGTGGCTGGCCAGTCCGCTTGGTTAATCGGCCATTGATTTGTTATCCCGCTGCTCTCTTTT
TCTAGTTCTATTAGTCTTGGTTAT---CTACATTAATCTTTGTGATTAAGGGTGTGTAATTTAAATATGTATGTTTTCCA
TAAATAAGGGAAATGCTGGA----GGCATGAGCTTCTGTATGTGAATATATGGAGAGATATTGGCCTTTGTTGTTCGAAA
AAAGAAATTGGTCTTTCAGGTGC-ATATACTTAATTTTCTGA-------TTTGCTATATTTCAAGTCATCTAGAAAATAG
TTACTTCAGAGTCGATCGAA----GCATATGCCTACAGTTGCACATA------TGAGTTTGATGAACAACT--CCAGTTG
CGCGTCTCTAAGCTTAAAGTTGCTCATACTCCCTCCATCCGGAAATACTTGTCATTAAAATGGATAGAAAAGAACGTATC
TAGAACGAAAATACATCTAGATACATCCCCTTTTATTCATTTTGATGACAAGTATTTCCGGACGGAGGGAGCATAACATA
AGATGTTCAACCACTTAAT---TGACCGTTAGATGAATAAAAACAAACTTTCAGGATCATTGACAAAATAACTATTTCTC
ATTCAAGTAAAGACTGACACTCGTATGTTGCTATGTACTCTCTCCATCCCATAATATAAGAGCGTTATTTTACACTAAGA
GGTGTCAAAGATGCTCTTATATTATGGGACTGAGGGAGTAACTCTAAATGTAAACAGTTTCAGTGATGGAACGATAGAGC
CAATAGGGTTAGTGGCAAAGTCGTGAAGGTACTTGAGCAGGAGCAAGCTACAAGTCTAGTAAAAAATTTACAAACCGCGC
TCAGATATTTGGATAAAAATCATGTGAATAAGCCCCGAAACTGAGAGTAGTGACTTCCTAATTTCAACTTTATTTGTTTG
TGTTGTTATCGTACTGCAGTT
>chr7D_2
AATAACAA--TGCAACAACCAAGTGGTAGAACCGCACAAGACCCGCAAAAAAAGGTCACGGAGCTCCAATGCATCTTATT
ACTGGCATAAT-----TTCTACTTTGGGCAGCAAGTGACCGGCCGCGAGCGCATGCGGCACTGCTTGGAAATCAAGCAGC
GGCTAGCTGTCCTGCAAGT------TGCGCGCGCGCGCGCGCGATTGGTTACGTCTGACGCAGTGTAGTGATCGATCAAG
CACCGCATATATGGAGCTAGGCCAAATCCTGAAGAACGCTAATTAACAACAATATAAAACTGGCCCTGAAATGACCAAAC
GTATTAGTGACCCTAAGATGCCGGCTTATCGCCATAAACTTCAAAAGTTTCCCTTATCCGAACAGTCTCCTTCCTTATCT
GAATTACATCATTATCCCAGAAAAAACATATTTTAGTATTTTCTAAAAGCTATTTTTCTACCTTAAAACGACGGGCTAGA
AACCCAAAACGGCATTTCGCCACAATTATCACCATAATATATTCACGACACTTCAAATCCAGCGACCCAATCCATGCATG
CATTTGCTGATTGTTCGTTGCTCCATCACCTGCTCTGTTCAGACGTCAGGCCTTCAGGTTTCGGAAAACAACAAAGCTGG
CTGGATAGCAATCTGGACGAGCCGCGCCTGACGAGAGAATCGATCCTTCTCAGTGTGTAGTTTCACCCTGCACCGTCAGT
CTCAAGAATCCTTCAGGTAGCAG---GC-ACGTTGCGCGGGCGTCGC-TCTCCACCGTCCGTCGGATCGCGGCGCGGTGC
GGTTCGG-----AAGAATCCTGTCCGTCCAGCGGGACTCTCCCTCCCCTATAAATCGGGAAGGGCTGGGCTGGCAGCCCT
CTCAACTTAAGCAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGGTCCACGAGCTTGCCGGTGTCTTCCAACTTCCA
AGAAGCAGCCTAGGTTAGGTAGCTTAGTTTAGGAGGAAGCCAGC-------------------TGCAAGAATGGGAGGGA
GCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCGAGGAAGGTGCGG
CCGAGCGACGAGGACGGGCTGTGGTACGTCGGGGAGCGGGACGTCGACAGGAAGGCCACGGAGTTCATCGCCAGGTTCCA
CGCCTCCGCCAGCTACGTCGAGGCTACCTAGGCTCGCTTGATCTTCTGCTGCTTCCGCCGGTGATCTCCGGGTCCGGCTA
CGTACCTCAGGCGCCCCGAGGTGGCTGGCCAGTCCGCTTGGTTAATCGGCCATTGA------------------------
----------TTAGTCTTGGTTATTATCTACATTAATCTTTGTGATTAAGGGTGTGTAATTTAAATATGTATGTATTCCA
TAAATAAGAGCAATGGTGGA----GGCATGAGCTTATGTA-----------------------GTCTTTGTTGTTTGAAA
AAAGAAGTTGGTCTTTCAGGTGC-ATATACTTAATTTTCTGA-------T-------ATTTCAAGTCATCTAGAAAATAG
TTATTTCAGAGTCGATGGAAGCATGCATATGCCTACAGTTGCACATA------AGAGTTTGATGAACAACTCCCAGGTTG
CGCGTCTCTAAGCTTAAAGTTGCTCATAAT--------------------------------------------------
---------------------------------------------------------------------------ACATA
AGATGTGCAACCACTTAAT---TGAACGTTAGATAAATAAAAACGAACTTCCAGGATCATTGATAAAATAACTATTTCTC
ATTCAAGTAAAAACATACACTCATATGTTGCTATGTACTTCCA-------------------------------------
----------------------------------GGAGTAATTCTAAATGTATACAGTTGCAGTGATCATATGATAGAGC
CAATAGGGTTAGTGGCGAAGCCATGAAGATACTTGAGCAGGAGCAAGCCACAAGCCTAGTGAAAATTTTACAAACTGCAC
TCAGATATTTGGATAAAAATCATGTGAATAAGCTCCGAAACTGAGAGTAACAACTTCCTGATTTCAACTTTATTTGTTTG
TGTTGTTATGGTACTGCAATT
>chr7B_4
TAACC--A--TGCAACAACCAAGTGGTAGAACCGCACAAGACCCGCAAAGAAAGGTCATGGAGCTCCAATGCATCTTATT
ACTGGCATAATTA-----CTACTTTGGGCAGCAAGTGACCGGCCGCGAGCGCATGCGGCACTGCTTGGAAATCAAGCAGC
GGCTAGCTGTCCTGCAAGT------TGCGCGTGCGCGCGCGCGATTGGTTACGTCTGACGCAGT-----GATCGATCAAG
CACCGCATATATGGAGCTAGGCCAAATCCTGACGAACGCTAATTAACAACAATATAAAACTGGACCTGAAATGACCAAAC
GTATTAGTGACCCTAAGATGCCGGCTTATCGCCATAAACTTTAAAAGTTTCCCTTATCCGAACAGTGCCCTTCCTTATCT
GAATTACATCATCATCCCAGAAAAACATTTTTTAATA--TTTTTAAAGGCTATTTTTCTACCTTAAAACGATGGGCTAGA
AACCCAAAACAGCATTTCGCCACAATTATCGTCATAATATATTCACGACACTTCAAATCCAGCGACCCGGTC----CATG
CATTTGCTGATTGTTCGTTGCTCCATCACCTGCTCTGTTCAGACGTCAGGCCTTCAGGTTTCGGAAAACAACAAAGCTGG
CTGGATAGCAATCTGGACGAGCCGCGCCTGACGAAAGAATCGATCCTCCTCAGTGTCTAGTTTCACCCTGCACCGTCAGT
CTCAAGAATCCTTCAGGTAGCAG---GCAACGTTGCGCGCGCGTCGGGTCTCTGCCGTCCGTCGGATCGCGGCGCGGTGC
GGTGCGGTTCAGAGGAATCCTGTCCGTCCAGCGGGACTCTCCCTCCCCTATAAATGGGGAAGGGCTGGGCTGGCAGCCCT
CTCAACTTAAGCAAGACAC------------CAGCAGCAGCAGGTCGGT-----------CCGGTGTGTTCCAACTTCCA
AGAAGCAGCC-----TAGGTAGCTTAGTTTAGGAGGAAGCCAGCACAGCAGCAGGTGACCGGCTGCAAGAATGGGAGGGA
GCATGTCGTGCTTCGGCGGCAGCGGCCGGGACTACGACGAGGCGTACGAGCAGCCGCGGCGGTCGTCGAGGAAGGTGCGG
CCGAGCGACGAGGACGGGCTGTGGTACGTCGGGGAGCGGGACGTCGATAGGAAGGCCACGGAGTTCATCGCCAGGTTCCA
CGCCTCCGCAAGCTACGTCGAGGCTACCTAGGCTCGCTTGATCTTCTGCTGCTTCCGCCGGTGATCTCCGGGTCCGGCTA
CGTACCTCAGGCGCCCCGAGGTGGCTGGCCAGTCCGCTTGGTTAATCGGCCATTGAGTTGTTATCCTGCTGCTCTCTTTC
TCTAGTTCTATTAGTCTTGGTTATTATCTACATTAATCTTTGTGATTAAGAGTGTGTAATTTAAATATGTATGTATTCCA
TAAATAAGAGCAAGGCTGGAGGGAGGCATGAGCTTATGTACGTGAAAATATGGAGAGATATTGGTCTTTGTTGTTCGAAA
AAAGAAATTGGTCTTTCAGGTGCCATATACTTAATTTTCTGATTTGCCAT-------ATTTCAAGTCATCTAGAAAATAG
TTATTTCAGAGTCGATCAAA----GCATATGCCTACAGTTGCACTTGCACATCAGAGTTTGATGAACAACTCCCCAGTTG
CGCGTCTCTAAGCTTAAAGTTGCTCATAAT--------------------------------------------------
---------------------------------------------------------------------------ACATA
AGATGTGCAACCACTTAATAATTGACGGTTAGATGAAGAAAAACAAACTTCCAGGATCATTGACAAAATAACTATTTCTC
ATTCAAGTAAAAACAGACACTCATACATTGCTATGTACTCTTTCCGTCCCATAATGTAAGAGCGTTTTTGACACCTCGTC
GAGGGAG------------------------------------CTACATGTATAAAGTTACTGTGATGGTAGGATAGAGC
CAATAGGGTTAGTGGAGAAGCCGTGAAAATACTTGAGCAGGAGCAAGCTACATGCCTAGTGAAAGTTTTACAACCCGCAC
TCAGATATTTGGATAAAAATCATGTGAATAAGCCCTGAAACTGAGATTAGCAACTTCCTGATTTCCACTTTATTTGTTTG
TGTTGTTATGGCACCGCAATT
>SNPs
---S-S-SSS----------------------------------------------------------------------
-------------SSS-------------------------------------------------------S--------
------------S------SSSSSS---------------------------S---------------------------
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---------------------------------------------S----------------------------------
-------------------------SS--------S-------------------------------------------S
---------S-----------------------S----------------------------------------------
-------S------------------------------------------------------------------------
--------------S------------------------------------S----------------------------
-----------------------SSS-----------------------------------------------S------
-----------------------------------S--------------------------------------------
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S-------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----S-------------------------------S--S-----S----------------------------------
--------------------------------------------------------S---------S------------S
--------------------------------------------------------------------------S-----
--------S-S------------------------S----S-----S-----------------S---------------
--------------------------------------------------SSSSSSS-----------------------
---S-------------------------------------------------S--------------------------
----------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
------S-------------------------------------------S-----------------------------
-----------S--S-------S----------------------S---------S----------S--SSSSS--SSSS
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------S------S---------S-S--------
----------------S---S-------S-------------------------S-----S----S------------S-
--------------------------------------------------SS-------S--------------------
---------S--------S--
>forward_182
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--CTAGCTGTCCCGCAAGTTGT----------------------------------------------------------
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>reverse_1811
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--------------------------------------------------AGTATTTCCGGACGGAGGGA----------
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