>input_sequence_87020
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----------------------------------------------------------ATGAAGGAAGATGGATCAGGAG
GTGTGGGGATTGTGACGGATCCATCAAGCATCTGTGTCACTTTCAGCATGGTTGGCCGCATTGTTGGCTCCTCCTGGAGA
CACCATAATGCCACGGCCACGAAGCGTTCCACCTTCTTTATATTGAAGATTGCCTCCTCATCACCCTTGATTAACAAGTC
AAGCCTCCCACTTCTATAG-------------------------------------------------------------
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>chr6D_1_TraesCS6D01G189900
GGTATACACGAGGAGCCATATTATTATGCTAAGCTAAATATAGTATATTTTTAATTAAAAAATGGATTTGATGCGTAATC
TACTATTTAATTGTTTTAGCTAGAATCCGTTCTAATGCAGGGTCTTTGATTTGTTTTTATTCCTTATTCAGGACATATTT
GTAAGCATGTTGCACCTGACTTTGATTTCACAGTTCAAGAGGGAAAGTGTAGTATTGAATAAGGAATAGCACATAAAGCT
CCGGACTCT-CCATACTAGATCTCATGATCAACAAAGATCGAGAACGTCTTGTGTTCTTTCTGTTGTAATGCTTGCATTC
AG----TAGAGTCCAAT--TCTCATTGTTAATACCCACTGTTACACTAAAAAGTATAGACGCAGTTGCCAAATTTCCAGT
GACATAAAACACTGGATAATGCTAATGTGAAAATCTAAATGGGATATATGCTAGGGTTACTCCCAGGTCGGTCGCTCGTA
AAGCAACATGGGAGTCCTGCTGCTAGTTGTAACAAATGGGATAGAAGTATTTCTTAAATATTTCGACATCACTAGCATTT
CAGTCGTGAACGCTTAAATCATTGTTCTCTATATCGTTCCAATTTTAGCTGATGTCCCCGAAGGGACCTTAAATCATTGT
TCTTACCCGATGGTTCCTAACCAGCCTGCACCGCACCTCACTGTTTCCTTGCATCTTCCAGTTTGATGATTTAATGCTAA
GCAATATACCAAAATATGCACACTGATTCACAAAGCAGTACATTCATGGCTTCACTGTGGTACTGAACATAAAAAGTATA
CGAACATTACAGAAATCTACATTTATTTTTGGAACCTAGTAACATATGCATACATTTTTTCTTATCAAGTACTTACATTC
CTGCTTCCATTTACTTACATTTAAAGGAATCATCACTCAAATTTATCATTTGCGGTAG---------TCCAATATACTCT
TATTTCACACTGCA--ACTTATACATTTAAAAACACACTCTACTATTGGAGTGAACTGATGAAGGAAGATGGATCAGGAG
GTGTGGGGATTGTGACGGATCCATCAAGCATCTGTGTCACTTTCAGCATGGTTGGCCGCATTGTTGGCTCCTCCTGGAGA
CACCATAATGCCACGGCCACGAAGCGTTCCACCTTCTTTATATTGAAGATTGCCTCCTCATCACCCTTGATTAACAAGTC
AAGCCTCCCACTTCTATAGCAGTCATTTGCCCAATATGTCAGTATTGCTTGCTCCTCATCAGCCGTCTCTAGCTCCACAT
TCCGTCTGCAACACACAATCTCCAGCAAGATCACCCCAAAACTATAAATGTCCACCTTGGATGTGATCCCTATGTTTTTG
AACCACTCGGGCGCGACGTACCCTCGAGTTCCCCTGATGCCAGTGTTCGTCTGTGTCTGATTTGTCCTGAGCAACTTTGC
TAGGCCAAAGTCTGAGATCTTTGCCACGAGATTCTCATCAAGAAGGATGTTTTGGGGCTTTATGTCACAATGGATAATTT
GAGTGTTGCATTCCTCATGTAAGTAGAGCAGGCCTCTTGCCACCCCAAGTGCGACTTGAACGCGAAGGTTCCAGGTTGGG
CTTGTACCACAAAAAAGGAATCCATTAAGTGAGCCATTGGTCATCAACTCGTACACCAGAAGCCTCTCTTTTCCTTCAGC
GCAGAAACCGAGCAACCGTACCAAGTTTCTGTGGAAGGTCCTTCCGATGGTTTGAACCTCAATGGCGAACTCCTTTTCAC
TCTCTTGGAGCATCTTGTCAATCTTCTTGACTGCAATGCCAGTCCCAAACTCATCTTCCAACTGGCCCTTGTATACGATA
CCAGATGCACCGCTACCCAGCTCTTCACGAAATCCATCTGTCACCTTCTCAATCTCCTTGTACGTGAATGCTCTAAGAGG
CAATGCCTCGGGACTCATTGTTTGTATCTGGGCTGGCTTCTTTCGCCTAATGACACGGTAAGATCCAAAATACAGAATGG
AGATGAGGAAAACAATAACAAGAGCAGATCCTCCAAGGAGCAGTGAACTTCCTATTATCCAATACCTCTTCTCTTTTCTC
CATGTATTGGAGTTACTGCCCAACTGGGACCCAGGAACATTAGTCCTGGGAACCTTGATAAAAACTGATCCCACTATGTC
ACCGAACATTCCGTTGGACAAGGGGCTCCTCTTTTTCCAGCAAGAACTGTTGTAGTATA
>chr6A_34
---------------------------------CTAAATATGGTATATTTTTAATTAAAAAATGGATTTGATGTGTAATC
TACTATTTAATTGTTTTAGCTAGAATCCGTTCTAATGCAGGGTCTTTGATTTGTTTTTATTCCTTATTCAGGACATATTT
GTAAGCATGTTGCTCCTGACTTTGATTTTGCAGTTCAAGAGGGAAAGTGTAGTATTGAATAAGGAATATCACATAAAGCT
CCAGACTCT-CCATACTAGATCTCATGATCAACAAAGATCGAGAACGTCTTGTGTTCTTTCCGTTGTAATGCTTGCATTC
AATATCTAGAGTCCAAT--TCTCGTTGTTAATACCCACTGTTACACTAAAAAGCATAGATGCAGT-GTCTAATTTCCAGT
GACATAAAACACTGGATAATGCTAATGCGAAAATCTAAATGGGATATATGCTAGGGTTACTCCCGGGT-GCTCGCTCGTA
AAGCAACATGGGAGTCCCGCTGCTAGTTGTAACAAATGGGATAGAAGTATTTCTTAAATATTTTGACATCTCTAGCATTT
CAGTCGTGAACGCTTAAATCATTGTTCTCTATATGGTTCCAATTTTAGTGGATGTCCCCGAAGGGACCTTAAATCATTGT
TCTTACCCGATGGTTCCTAACCAGCCTGCACTGCACCTCACTGGTTCCTTGCATCTTCCAGTTTGATGATTTAATGCTAA
GCAATATACCAAAATATGCACACTGATTCACAAAGCAGTACATTCATGGCTTCACTGTGGTACTGCACATAAAAAGTACA
TGAACATTACAGAAATTTACATTTA-TTTTGGAACCTAGTAACATATGCATACATTTTTTCTTATCAAGTACTTACATTC
CTGCTTCCATTTACATACATTTAAAGGAATCATCACTCATATTTATCGTTTGCGGTAG---------TCCAATATACTCT
TATTTCACACTGCA--ACTTATACATTTAAAAACACA--CTACTATTGGAGTGAACTGATGAAGGAAGATGGATCAGGAG
GTGTGGGGATTGTGACGGATCCATCAAGCATCTGTGTCACTTTCAGCATGGTTGGCCGCATTGTTGGCTCCTCCTGGAGA
CACCACAATGCCACGGCCACGAAGCGTTCCATCTTCTTTATATTGAAGATTGCCTCCTCATCACCCTTGATTAACAAGTC
AAGCCTCCCACTTCTATAGCAGTCATTTGCCCAATATGTCAGTATTGCTTGCTCCTCATCAGCTGTCTCTAGCTCCACAT
TCCGTCTGCAACACACAATCTCCAGCAAGATCACCCCAAAACTATAAATGTCGACCTTGGATGTGATCCCTATGTTTTTG
AACCACTCGGGCGCGACGTACCCTCGAGTTCCCCTGATGCCAGTGTTCGTCTGTGTCTGATTTGTCCTGAGCATCTTTGC
TAGGCCAAAGTCTGAGATCTTTGCCACGAGATTCTCATCAAGAAGGATGTTTTGGGGCTTTATGTCACAATGGATAATTT
GAGTGTTGCATTCCTCATGTAAGTAGAGCAGGCCTCTTGCCACCCCAAGTGCGACTTGAACGCGAAGGTTCCAGGTTGGG
CTTGTACCACAAAAAAGGAATCCATTAAGTGAGCCATTGGTCATCAACTCGTACACCAGAAGCCTCTCTTTTCCTTCTGC
GCAGAAACCGAGCAACCGTACCAAGTTTCTGTGGAAGGTCCTTCCGATGGTTTGAACCTCAATGGCGAACTCCTTTTCAC
TCTCTTGGAGCATCTTGTCAATCTTCTTGACTGCAATGCCAGTCCCAAACTCATCTTCCAACTGGCCCTTGTATACGATA
CCAGATGCACCGCTACCCAGCTCTTCACGAAATCCATCTGTCGCCTTCTCAATCTCCTTGTACGTGAATGCTCTAAGAGG
CAATGCCTCGGGACTCATTGATTGTATCTGGGCTGGCTTCTTTCGCCTAATGACACGGTAAGATCCAAAATACAGAATGG
AGATGAGGAAAACAATAACAAGGGCAGATCCTCCAAGGAGCAGTGAACTTCCTATTATCCAATACCTCTTCTCTTTTCTC
CATGTATTGGAGTTACTGCCCAACTGGGACCCAGGAACATTAGTCCTGGGAACCTTGATAAAAACTGATCCCACTATGTT
ACCTTCCATTCCGTTGGACAAGGGGCTCCTCTTTTTCCAGCAAGAAC------------
>chr6B_34
---------------------------------CTAAATATGGTATATTTTTAATTAAAAAATGGATTTGATG-------
-----TTTAATTGTTTTAGCTAGAATCCGTTCTAATGCAGGGTCATTGATTTG-TTTTTTTCCTTATTCAGGGCATATTT
GTAAGCATGTTGCACCTGACTTTGATTTTGCAGTTCAAGAGGGAAAGTGTAGTATTGAATAAGGAATAGCACATAAAGCT
CTGGACTCTACCATACTAGATTTCATGACCAACAAGATTGAGAA----CTTCTGTTCTTTTCGTTGTAATGCTTGCATTC
AATATCTAGAGTCCAATATTCTCATTTTTATTACCCACTGTTACACTAAGAAGTATAGATGCAGTTGTCTAAGTTCCAGT
GACATAAAACACTGGATAATGCTAATGTGAAAATCTAAATGGGATATATGCTAGGGTTACTCCTGGGTCGCTCGCTTGTA
AAACAACATGAGAGTCCTGCTGCTAGTTGT-ACAAATGGGATATAAGTATTTCTTAAATATTTCGACATCTCTAGCATTT
CAGTCGGGAACGCTTAAATCATTGTTCT----------------------------------------------------
---TACCCGTTGATTCCTAACCAGCCC---------------GTTTCCTTGCATCTTCCAGCTTGATGATCT----CTAA
GCAATATACCAAAATATGCACACTGATTCGCAAAGCAATACATTCATAGCTTCACTGTGGTACCGCACATAAACAGTACA
TGAATATTACAGAAATCTACAATTATTTTTGGAACCTAGTAACATATGCATACATTTC-------------------TTC
CTACTTCCGTTTACCTACATTTGAAGGAATCATCACTCGTATTTATCGTTTGCTGTAGTCAAGTACATCCAATATACTCT
TATTTCACACCGCAGAACTTATATATTTAGAAACACACTCTACTATTGGAGTGAACTAATGAAGGAAGATGGATCAGGGG
GTGTGGGGATTGGAACGGATCCATCAAGCATCTGTGTCACTTTCAGCATGCTTGGCCGCATTGTTGGCTCCTCTTGGAGA
CACCACAATGCCACGGCCACGAAGCGTTCCACCTTCTTTATATTGAAGATTGCCTCATCATCACCCTTGACTAACAAGTC
AAGCCTCCCACTTCTGTAGCAGTCATTTGCCCAATATGTCAGTATTGCTTGCTCCTCATCAGCTGTCTCTGGCTCCACAT
TCCGTCTGCAACACACAATCTCTAGCAAGATCACCCCAAAACTATAAACATCCACCTTGGATGTGATCCCTATGTTTTTG
AACCACTCGGGGGCGACGTACCCTCGAGTTCCCCTGATGCCAGTGTTCGTCTGTGTCTGATTTGTCCTGAGCAACTTTGC
TAGGCCAAAGTCTGAGATCTTTGCCACGAGATTCTCATCAAGAAGGATGTTTTGGGGCTTTATGTCACAATGGATTATTT
GAGTGTTGCATTCCTCATGTAAGTAGAGCAGGCCTCTTGCCAACCCAAGTGCGACTTGAACGCGAAGGTTCCAGGTTGGC
CTTGTACCACAAAAAAGGAATCCATTAAGCGAGCCACTGGTCATCAACTCGTACACCAGAAGCCTCTCTTTTCCTTGTGT
GCAGAAACCAAGCAACCGTACCAAGTTTCTGTGGAAGGTCCTTCCGATGGTTTGAACCTCAATGGCGAACTCCTTTTCAC
TCTCTTGGAGCATCTTGTCAATCTTCTTGACTGCAATGCCAGTCCCAAACTCATCTTCCAGCTGGCCCTTGTATACGATA
CCAGATGCACCGCTACCCAGCTCTTCACGAAATCCATCTGTCGCCTTCTCAATCTCCTTGTACGTGAATGCTCTAAGAGG
CAATGCCTCGGGACTCATTGATTGTATCTGGGCTGGCTTCTTTCGGCCAATGACACGGTAAGATCCAAAATACAGAAT--
----------------AACAAGGGCAGATCCTCCAAGGAGCAGTGAACTTCCTATTATCCAATACCTCTTCTCTTTTCTC
CATCTATTGGAGTTACTGGCCGACTGGGACCCAGGAATATCAGTCCTGGGAACTTTGATAAAAACTGATCCCAGTATGTC
ACCTTCCATTCCGTTGGACAAGGGGCTCCTCTTTTTCCAGCAAGAACTGTTGTAGTA--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------------------S------
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----------------------------SS--------------------------------------------------
-------------------------------------------------------------S------------------
-S---------------------------------------------------------S-------S-S----------
----------------------------------------------------------------S-----S---------
----------------------------------------------------------------------S---------
----------------------------------S-------------SS------------------------------
-------------------------------S------------------------------------------------
-----------------------------------------------------------------S------------S-
S-------------------------------------------------------------------------------
--------------S------------------------S-------S--------------------------------
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-----S--------------------------------------------------------------------------
---------------------------------------------------------------S----------------
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-----------------------------------------------------------------------------S--
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------------------------------------------S-------------------------------------
--------------------S-----------------------------------------------------------
----------------------S---------------------------------------------------------
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---SSS---------------------------------------------------SS
>forward_672
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------------GTTCCTAACCAGCCTGCACC------------------------------------------------
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>reverse_2166
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-----ACATTCCGTTGGACAAGGGG----------------------------------
