>input_sequence_87013
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------------------------------------------------------------------ATGGCGGACATCGC
CGTCGACAAGGGCGACAGTATCCTTG-CCCCTCGATGGATAGGGGGGCAGTTCCGCCTCACCATGGAGGCAGAGCACCTC
ATGGCAGAGGTGCACCTCGAGGCGGAGCACGCGGACATTGTCGCCCCTACCGAGCTCTACACCAACCAAGCCTTCGTTGT
GGAAAA-CACACCATCCTCGAGGCAGTGA---------------------------------------------------
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>chr6A_1_TraesCS6A01G177200
AAGGGTTATGGTGGTTGAACACGTTTGGTGTCGAGGTCGATGTCGCTGCTCATTGGCCATGATTTCTCGCCACCGAGCCT
GATGCGCGGCGGCCTCCTCTTTGTCCTTCTACAGTTGTATGTGGGCAGGGGCAGCTACAGTAGCCAACCTGATGGCCTCC
ATGGCCCTTATGGTGGGGTCATCCGCTGGCAACGACGTGCTGAGTAGCCACAGTGCTTCGTCAA--ACGATCAATGGGGT
CATTTTTTGTGTGGCGAAGACCGAGGGACCAGCCCCAGGGGTCATGAAACCCGGGTGTCTGGTGGCCGGGGCTGAGAAGC
CGGGAGGGCTTCGGTTGAATGATGTGGAAGCTAGGGGTGCAAAAGGATCGACGGTCATAGTAGTGATGACCGGGGGTGAT
AAAGCCAGCGCAACATTGCAATCCTTTGGCTTGTGGTCGTCGATGAGTGCACAGTTGGTGCATATCATGGCGACCAGATG
GAATACATGGGTGGGCTGGTGGGTTAGCATGGTGTCGATGTCGTGTCCCGATCACATGATCGTGATCTAGGCCTCGATTA
TGAAGCTTGCTAGTGAAGAATCATCGTTCTTCAGGTCAAAGGTCGGAGATGGTGTCGGCGGGTATTTCATGGAAGCAGCG
CTTGCAGCTTGGGGAAGCGGTGGAACGCAAAGT--------CAGAGGTCGCCATAGTGGTCGACGACGAATGCGAGCAAA
-TGAAAATGGTTCGGGGGCAGGCGGCGCGTCGATGTGGAGTCGTCCTGCCTCATTCACAATGAAGATGAGAGCAGAAAGT
AAAGCTCTGGCCCGACGCGTCACCGAGCATTATCATACATCTGATTTGGAGTCAGTC---------------CCTTGACT
GGCGCGCCAACCGCCAGTTCTGGCCGTGGAGGCTAGATGCATTGCCCGCGTTGTGGCCGGCCTTCCTTCGACCTTGAACG
AGGGGGGAAACCCCGTGCTCAGAGGAGGTGGTCCTGGCGATTGACACTGCCGACTCCGGGTTGGAGATGGCGGACATCGC
CGTCGACAAGGGCGACAGTATCCTTG-CCCCTCGATGGATAGGGGGGCAGTTCCGCCTCACCATGGAGGCAGAGCACCTC
ATGGCAGAGGTGCACCTCGAGGCGGAGCACGCGGACATTGTCGCCCCTACCGAGCTCTACACCAACCAAGCCTTCGTTGT
GGAAAA-CACACCATCCTCGAGGCAGTGATGGCAAATAGCCACAAGCTCTTCATCCACAACCGAGAGCGAGAA-GAGATC
TTTGCGGACAAGGACG------------------------ACCATGATCATGAGGCCGACGGCTCCGGCTAGCGACTCCT
TAGGAAGTATAGACTTTAGTATGTACTCCCTCCGTTCTCAAATAAAGTCTTTATAGAGGTTCCAACAAGTGACTACATAC
TAAGTAAAACGAGTGAATCCGCACTCTAAAATATGTCTACATGCATCCTTATGTTGTAATCCATTTGAAATGTCTAAAAG
GACTTATATTTAGAAACAGAGGGAGTAGTTTACAATTTTATTTTCAAATGTAGTTGCATCTCATTTTTATCTACGCATGG
ATGTATGAAATCTTCTCATTTTACGTTGCAGGCTTTTGTATGGATTTAAGGGTTCGTCAATAAGGGAATAAGGGGAATGG
TTGCACGAACGGACAAATGGGGGCGACCGGCTGCCCAGTTCGGTTGAAGATGCACTTACTGATTAAATAAGCATCACCAA
GTTATAAACACCTATTGTAATTACATTTAGTCCACCTTTCAGTCTGAGTGTGGCCCTTCAAAAAGAATTAGCTTGTGGTT
AATCTAGGGAGCACCAAGTCCATAGAACTTTGGAGGAATTCTAAGAGGGGTAAAATCTTGTATAATTTCAGTCGAACATC
TAAAGATCTATTTGTACAAAGTTGTGTGCTTTCGTTTAGGATACAAGGTTTTCTGTTCCTACGTTTCAGAATCCTGAATT
TCAAAGGGGTCTTATAGTTACTCCTTGGGCCTCAGCAGTAAATGAATAGAACAAGGATCAATCCAGTGCATCTATCTTCT
TTCCATGAGTT-TTTTTTTCCTGTTCCTATCTATGAGCCAATCTGAAATCAGAATCTCATGGACAGGCTTGAATTTAATC
ACGTGAAATGCGTGAAAAAAGGACAGATGTCAAATCAATAGAAAAGACAAGTATG-CCAGTGATCTTACTTAACAATTCC
ACATCTTACCCGCAGG
>chr6D_1
AAGGGTGTTGGTGGTTGAACATGTTTGGCGTCGAGGTCGTTATCGCTGCTCATTGGCCATGATTTCTCGCCA--------
---GCGCGACGGCCTCCTCTTTGTCCTTCTACAGTTGCATGTG------GGCAGCTACAATAACCTACCTGATGGCCTCC
ATGGCCCTTATGGTGGGGTCATCCGCTGGCAACGACGTGCT---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGATCGATGGTCATAGTAGTGATGACCGGGGGTGAT
AAAGCCGACGCAACATTGCAATCCTCTGGCTTGTGGTCGTCGATGAGTGCACAGTTGGTGCATACCATGGCGACCAGATG
GGATACATGTGTGGGCTGGTGGGTTAGCATGGTGTCGGTGCCGTCACAT---------ATCGTGATCTTGGCCTCGATTG
TGAAGCTTGCTCGTGAAGAATCGTCGTTCTTTAGGTCAAAGGCCAGAGATGGTGTCGGCGGGTATTTCATGGAAGCAGCG
CTTGCAGCTTGGGGAAGCGGTGGAACGCAAAGTGCCAAAGTCAGAGGTCGCTGTAGCGATCGACGATGAATGCGAGCAAA
CCGAAGATGGTTCGGGGGCAGGTGGCGTGTCGATGTTGCCTCG----------TTCGCGATGAAGGTGAGACCTGAAAAT
AAAGCTCTGGCACGACGTGTCACCGAGCATGATCATAGATCCGATTTGGAGTCAATCTCCGGCCGATACATTCCTTGACT
GGGGCGCCAACCGCCAGTTTTGGCCGTGGAGGCCGGATGC-TTGCTCGCGTTGTGACC-GCCTTCCTTCGACCTTGAACG
AGGGGGAAGA-CCCGTGCTCAAAGGAGGTGGTCCTCGCGGTTGACACCGCCGCCTCTGGGTTGGGGATGGCAGACATCGT
CATCGACAAAGGCGACAATATCCCTGACCTCTCGATGG--AGGGGAGCAGCTCCGCCTCACCATGGAGA-----------
----CGGAGGTGCACCTCGATGCGGAGCACGCGGACATTGTCACCCCCACCAAGCTCTACGCCGACCCGGCCTTCGTTGT
GGAAAACCACACCGGCCTCGAGGCAGTGATGGC-AATAGCCACAAGCTCTTCATCCGCAACCGAGAGCAAGAA-GAGACC
TTTGTGGATGAGGACGAGCAGATGCCTACCGCCACCAATGACCATGACCATGAGGCCGACGGCTCCGGCTAGCAACTCCT
CAAGGAGTATAGACTTTAGTATGTA-------------------------------------------------------
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---------------------------GTTTGCAATTTTATTTTCAAATGTATTTGCATCTCGTTTTTATCTATGCATGC
ATCTATGAAATCTTCTCATTTTACGTTGCAGGCTTTTGTATGGTTTTGAGGGTTCGTT--------AATAAGGGGCATGG
TTGCACAGGCAGACAAATGGGGGCGACCGGCTGCCCAGTTCGGTTGGAGATGCACG----------ATAAGCATTGTCAA
GTTATAAACACCTATTGTAATTACATTTAGTCCATCTTTCAGTTTAAGTGTGGCCCTTCAAAAAGAATTAGCTTGTGGTT
AATCTAGGGAGCACCAAGTCCATAGAGCTTTGGAGAAATTCTAAGAGGGGCAAAATCTTGTATAATTTCAGCTGAACATT
TAAAGATCTATTTG---------------------------TACAAGGTTTTATGTTCCTACGTTTCGGAATCCTGAATT
TTAGAGGGGTCTTATAGTTACTCCTTGGGCCTCAGCAGTAAATGAATAGGACAAGGATCACTCCAGAGCATCTATCTTCT
TTCCATGAGTTCTTTTTTTCCTGCTCCTATCTATGAGCCAATCTGAAATCCGAATCTCATGGACAGGCTTGAATTTAATC
ACGTGAAATGCGTG-AAAAAGGACAGATGTCAAATCAATAGAAAAGACAAGTATGGCCAGTGATCTTACTTAACAATTCC
ACATCTTACCCGCAGG
>chr6B_2
-AGGGTTATGGTTGTTGAACATGTTTGGGGTCGAGGTCGTTGTCGCTGCTCCTTGGCCATGATTTCTCGCCACCGAGCCT
GATGCGCGGCGGCCTCCTCTTTGTCCTTCTACAGTTGTATGTG------GGCAGCTATAGTAGCCTACCTGATGGCCTCC
ATGGCCCTTATGGTGGGGTCATCCGCTGGCAACGACATGCTGAGTAGCCATAGTGCCTCGTTAGTGACGATCAATGGGCT
CATTTTTGGTGTGGCGAAGACTGAGGGGCCAGCCCCAGGGGTCATGAAACCCGGGTGTCTGGTGCCTGGGGCTGAGAAGC
CGCGAGGGCTCCGGTCGAATGATGTGGAAGCTAGGGGTGCAAAAGGATCGACGGTCATAGTAATGATGACTGGGGGTGAT
AAAGCCAGGGCGACATTGCAATCCTCTGGCTTGTGGTCGTCGATGAGTGCACAGTTGGTGCATAGCATGGCGACCAGATG
GAGC------------------GTTAGCATGGTGTCAGTGTCGCATCCCGATGACATGATCGTGATCTGGGCCACGATTG
TGAAGCTTGCTAGTGAAGAATCATCGTTCTTCAGGTCAAAGGCCGGAGATGGTGTCGACGGGTATTGCATGGAAGCTGCG
CTTGCAGCTTGGGGAAGCGGTCGAACGCAAAGT--------CAGAGGTCGCCGTAGCGGTCGACGACACATGCGAGCAAA
-CGAAAATGGTTCGGGGGCAGGCGGCGCATCGATGTGGAGTTGTCCTGCCTCATTCGCGATGAAGGTGAGAGCCAAAAGT
AAAGCTCTGGCCCAACACATCACCGAGCATGATCATAGATCCGATCTGGAGTCAGTCTCCCGCCGATACATCCCTTGACT
GGCGCGCCAACCGCCAGTTCTGGCCGTGGAGGCCAGATGCGCTGCCCACGTTGTGGCCGGCCTTCCTTCGATCTTGAATG
AGGGGGAAAGCCCCGTGCTCAAAGGAGGTGGTCCTGGCGATTGACACCGCCGCCTCCGGGTTGGAGATGGCGGACATCAC
CATCGACAAGGGCGACAA-ATCCCAGACCTCTCGATGGATAGGGGAGCAGTTCCGCCTCATCATG--GGCAGAGCACCTC
GTGGCGGAGGTGCACCTCAAGGCGGAGCACGCGGACATTGTCGCCCCCACCGAGCTCTACGCCGACCAGGCCTTCATTGT
GGAAAACCACACCATCATCGAGGCAGTGGTGGCAAATAGCCGCAAGCTCTTCATCTGCAACCGAGAGCAAGAAAGAGACC
TTTGCGAACGAGGACGAGCAGATGCCTCCCGCCACCAACGACCATGATCATGAGGCCGACGGCTCTGGCTAGCGACTCCT
CGGGAAGTATAGACTTTAGTATGTACTCCCTCTGTCCCATAATATAAGAACGTTTTTGACACTGTGCATAGTGTCAAAAA
CGTTCTTATATTATGGG---------------------------------------------------------------
---------------ACAGAGGGAGTAGTTTGCAATTTTATTTTCAAATGTATTTGCATCTCGTTTTTATCTACGCATGC
ATGTATGAAATCTTCTCATTTTACGTTGCGGGCTTTTGTATGGTTTTAAGGGTTCGTT--------AATAAGGGGAATGG
TTGCACGGACGGACAAATGCGCGCGACCGGCTGCCCAGTTCAGTTGAAGATGCACTTACTGATTAAATAAGCATCATCAA
GTTATAAACACCTATTGTAATTACATTTAGTCCATCTTTCAGTTTGAGTGTGGCCCTTCAAAAAGAATTAGCTTGTGGTT
AATCTAGGGAGCACCAAGTCCATAGAACTTTGGAGGAATTCTAAGAGGGGCAAAATCTTGTATAATTTCAGTTGAACATC
TAAAGATCTATTTGTACAAAGTTGTGTGCTTTCGTTTAGGATACAAGGTTTTCTGTTCCTACGTTTCAGAATCCTGAATT
TCAAAGGGGTCTTATAGTTACTCCTCGGGCCTCAGCAGTAAATGAGTAGGACAAGGATCAACCCAGAGCATCTATCTTCT
TTCCATGAG---TTTTTTTCCTGTTTCTATCTATGAGCCAATCTGAAATCAGAATCTCATGGACAGGCTTGAATTTAATC
ACGTGAAATGCGTG-AAAAAGGACAGATGTCAAATCAATAGAAAAGACAAGTAT-GCCAGTGATCTTACTTAACATTTCC
ACATCTTACCCGCAGG
>SNPs
---------------------S------S----------S----------------------------------------
-------------------------------------------SSSSSS----------------S--------------
--------------------------------------------------S-----S----S-S--------------S-
-------S-------------S-----S------------------------------------S-S-------------
--S-------S----S----------------------------------------------------------------
-------------------------S--------------------------------------S---------------
---------S---------------------------S------S-------S---------------S----------S
------------------------------------------S-------------------------------------
----------------------------------------------------S---S-----------------------
-S------------------------------------------------------S-S------S-------S------
------------------------------S------S---S--------------------------------------
---------------------------------S------S---------------------------------------
------S--------------S-------------------------S----S---------------------------
-S---------------S-----S-----S---------------S----------------------------------
S----S-----------------------------------------S------------S--S----S-----------
--------------------------------------------------------S-----------S---------S-
---------S----------------------------------------------------------------------
S-------------------------------S--S-SSS----S-SSSSSSS-SSS-SSS-SSSSS-SS-SS-SS-S-S
SSSSSSS-SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS----------------S--------------------S---------S----------------S
-------------------------------------------S-------------SSSSSSSSS--------------
-------S--------------------------------------------------------------------S---
----------------------------------S--------S------------------------------------
--------------------------------------------------S---------------------S-------
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-------------------------------------------------S----------------S-------------
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--------------S-----------------------------------------------------------------
----------------
>forward_518
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------------------GTGGGTTAGCATGGTGTCGA------------------------------------------
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>reverse_1795
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----------------------------------CCTTTCAGTCTGAGTGTGGC--------------------------
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