>input_sequence_87000
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---------ATGCCCCTTGCTGCTCCACAGCTTGTCGAATATCCTCCTCGACCGCGACTGCAGCAGGAGGCCTCCGAGTT
GGTCCTTGAAGCTGTTCCTGCCAACAACTTGATCTTTGAAGCTGTTTCTGCCAACAACTTGATCCTTGAAGCTGCTTCTG
CCTCCCCTGAGCTCGACGTGCCGGTCCTCGCCCTCTCCTCTTGCGCTTAG------------------------------
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>chr5A_1_TraesCS5A01G223900
GAACT-CTCTCTGTTCCTCATATCTGTAACAACGGCGGGGGACACTTTGT-AGTATCTAGTATTTGGATGGCCCAGACTA
ACGGTGTAATTATTTTCTGCTTGCAGGCTGATTTACGCTGGTAAGCAGCTTGCAGATGACAAGACTGCCAAGGACTACAA
CATCGAAGGTGGCTCGGTCCTCCATCTTGTCCTTGCTCTGAGGGGTGGTTAC----TAGTTAAGCTGTAATGGAAACACT
TGCCTCCTGAGAGAAGTGACCATTGGTGGCATGGAACCTGTGTTGGTGTTGCAAAGAGATAATAACAAACTAGCTTTGCT
TAGTGGGAGGGGCTGTCTTCCATGTTATCTGCCTATATGATTTGACAAAACTAGTCGCAACTTTATCCGCCTCTGTTATT
AGCTCTGCTGCGTAGTAAGATCCATATATCACCTGAATTTTGA-TTGTGTTTC-GCCACTCTTTCCTGAATTCAAGTTTG
--------ATGT-AGGGCTAAATGCAGAAAGATTGATCGGAAAATATAAATTATATTCATGTGAGGCTGGTTCGCCGAAT
CCTGAAAACATTCTGCTCTG------------------------------------------------------------
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------------------------------------------------GACACAAGAACGAGTGTTCGCACATACCCTTT
TAACTTTTTCTTCATAAACATTTCAGAGAAGAACCAAGCATACT-AGATCTTTCCTCTAGTTAAGATACACTGGTAAGCT
ACGGGCCTCTGACTTAGATAAC---CATACAGAGAGCAGCATATTGAGCTGCTTACAGTCCTCCCAAACATATTTTCTCT
TCATTGACCAGAGCAGGGAGCAAACAAAAATGATGAGCATCAGCTGATAACTTCTCTTTCCTGTACAAACCTAACCCAAA
GCTAAACTAAAACAAGAGGGGGGACAAGGAGTAAGAAGAGCCCCTATGAAACAGAATACCTTCTGTTCCTAAGAGGGGGG
AGAGGAGAGGGCTTCACTTCCGTGGGCTTCGCCGTCGATGGCGGGCTCTGTGAGCTGCCGGACGTCTCTGAACCCTTGCC
GTTCTCTCCATGCCCCTTGCTGCTCCACAGCTTGTCGAATATCCTCCTCGACCGCGACTGCAGCAGGAGGCCTCCGAGTT
GGTCCTTGAAGCTGTTCCTGCCAACAACTTGATCTTTGAAGCTGTTTCTGCCAACAACTTGATCCTTGAAGCTGCTTCTG
CCTCCCCTGAGCTCGACGTGCCGGTCCTCGCCCTCTCCTCTTGCGCTTAGGCTTGTCACTTGCTTATCCAGCTTGTTTGG
GTGCCTCGGTATCCGCCTTTCGCAGTGCTCGCTTTGTTCCTGCACAGGCTTTGCACAAGCATGCTCTCCGCCGTCAGTTG
GGGCTGGTACACTGCTTGAACCCGCCCTCAGCTGCTGGAAGAAGAGGACCTGCACCACCACCCGGAGAGGCAGGCGGTCG
TTTTGTGTGGCATGCACGCATGCATCTGTCGAAAGCTTCTTGACATCTATCAGGCTGCAGATCTTCTTTTTGTCTGCTTT
GTTTATGTCTGGATGTTCCTGGTTAG-AAGAAGCAAATGATCAGGTGTGGTTATGGTCTTATAAAAGGTGAGATAGCAAA
CAGGCGATTTATCAAGTCTGCTTCCATGCTTAACCAAAGACTAGTATAACTATGGTTAAGATTTGTATAAGATTATTAGG
ATCAAGTTTCCATTCA--GTATAGCAGAAAGTACTGACAGCAACCATTGAGCAAATTTAGGTTCATCAAGTGCATTGAAC
ATACCTTGATATACGCATCAACCGCGTAGTACAAGCCGTCATGAACAGGTCTAGCTGCTTCTGGCACCGCCGTAGCTAGT
TCTACAAAGGTGGAGAATTCAAGGTCTGGATCTGCAGCTACTTCAGATAGGTACCCATCAACCAACTCCCCTAGAGCCAA
AGTGGATTCTTGCTCAAAGTTGAGCTCAATCATTTTCTCATCAGATTTCTCGACGAAATCGCCATTGTGAGACAATGCTG
TTCTTGCAACAAATCTCTGAACAAGATTATGGACCAAATGAACATCATGCATGCCCTCACTGGGCGAAGCAGCAGGCAAC
AAGAGATCCTTCACCGAAGCTTTGTGCAGCTGGAAACTGATCCTTCTCATGAGCTCCTCCTTCACATGATCCCCAGACCC
AACTAATATAGCAACTTTCAAGAGCTTCAGGAGAAACCTGCAAGAGCAACCCGAGCTCTTATCTGACGGCAGCAACCATA
TTATGGTCTCCAC
>chr5B_1
GAACTCCTCTCTGTTCCTCGTATCTGTAACAATGGCGGTGGATACTTTGTAAGTGTCTAGCATTTGGATGACCCGGACTA
AGGATGTAATTATTTTCTGCTTGCAGGCTGATTTATGCTGGTAAGCAGCTTGCAGATGACAAGACTGCCAAGGACTACAA
CATCGAAGGTGGCTCGGTCCTCCATCTTGTCCTTGCTCTGAGGGGCGGTTACTAGTTAGTTAAGCTGTAATGGAAACGCT
TGCCTCCTGAGAGAAGTGACCATTGGTTGCATGGAACCTGTGTTGGTGTTGCAGAGAGATAATAACAAACTAGCTTTGCT
TAGTGGGAGGGGCTGTCTTCCATGTTATCTGCCTATATGATTTGACAAAACTACT--CAAGTTTACCCGCCTCAGTTATT
AGCTCTGCTGCGTAGTAAGATCCATGTATCATCTGAATTTTGGGTTGTGTTTC-GTCACTCTTTCCTGAATTCAAGATTG
CAAGTTCCATTT-AGGGCTAAATGCAGATAGATTGATTTGGGGT--------------------------TTCGCGGAAT
CCTGAAAACATTCTGATCTGAGATGGCAGAATCAGTTATGGCT----TAGAAGCCAC-TTGGGTTACATCCACCTCAAAT
GAAAAATATACTCGTGCAATCATTGTAATCCATGTTCTTTGTGTCCTGCAATCTGATACTCCCTCCGTTCCTAAATGTAA
GTCTTTCTAGAGATTTCCACTACGGACTACATATGACGTAAAATGAGTGAGTCGACACTCAGTAGTCCGCATTGAAATCT
CTAAAAAAGACTTGCATTTACGAAAGGAGGGAGTATTATTCTGCTCTAGACACGAGAACTAGTGTTTACACAAACCCTTT
TATCTTGTTCTTCATAAACATTTCAGAGAAGAACCAACCCTCCTAAGATCTTTCCTCCAGTTAAGATACACTGGTAAGCT
ACGGGCCTATGACTTGGATAAC---CATGCAGAAAGCAGCATATTGAGCTGCTTACAGTCCTCCCTCACATATTTTCTCT
TCATTCACCAGAGCAGGGAGCAAACAAAAATGGTGAGCATCAGCTGAGAACTTCTCTTTCCTGTACAAACCTAACCCAAA
GCTAAACTAAACCAAGAGGCCGG---AGGAGTAAGAAGAGG-CCTATGAAACAGAATACCTTCTGTTCCTAAGAGGGGGG
AGAGGAGAGGGCTTCACTTCCGTGGGCTTTGCCGTCGATGGCGGGCTCTGTGAGCTGCCGGACGTCTCTGAACCCTTGCC
GTTTTCGCCATGCCCCTTGCTGCTCCATAGCTTGTCGAATATCCTCCTCGACCGTGACTGCAGCAGGAGGCCTCCCAGTT
GATCCTTGAAGCTGTTTCTGCCAACAACCTGGTCCTTGAAGCTGTTTCTGCCGACCACCTGGTCCTTGAAGCTGTTTCTG
CCTCCCCTGAGCTCGACGTGCCGGTCCTCACCCTCTCCTCCTGCGCTTAGGCCTGTCACTTGCTTATCCAGCTTGTTCGG
GTGCCTGGGTATCCGCCTTTCACAGTGCTCACTTTGTTCCTGCGCAGGCTTTGCACAAGCATTCTCTCCGCCGTCAGTTA
GAGGTACCGCGCTGCTTGAACCCGCCCTCAGCTGCTGGAAGAAGAGGACCTGCACCACCACCCGGAGAGGCAGGCGGTCG
TTTTGTGTGGCGTGCACGCATGCATCTGTGGAAAGCTTCTTGACATCTATCAGGCCGCAAATCTTCTTTTTGTCAGCTTT
GTTTATGTTTGGATGTTCCTGGTTAAAAAGAAGCAAATGATCAGGTGCGGTTATGGTCTTCTAAA-GGTGAGATAGCATA
CAGGTGATTTATCAAGTCTGCTTCCATGCTT-ATCAAAGACTAGCATAACTATGTTTCAGATTTGTA--AGTTTATTAGC
ATCAAATGTCCATTCATGGTATAGCAGAAAGTACTGACAGCAACCATTGAGCAAATTTAGGTTCATCAAGTGCATTGAAC
ATACCTTGATATACGCATCAACCGCGTAGTACAACCCGTCATGAACAGGTCTAGCTGCTTCTGGCACCGCCGTAGCTAGT
TCCACGAAGGTGGAGAATTCAAGGTCTGGATCTGCAGCTACTTCAGATAGGTACCCATCAACCAACTCCCCTAGAGCCAA
AGTGGATTCTTGCTCAAAGTTGAGCTCGATCATTTTCTCATCAGATTTCTCGACGAAATCGCCATTGTGAGACAATGCGG
TTCTTGCAACAAATCTCTGAACAAGATTATGGACCAACCGAACATCATGGATGCCATCACTGGGCTCAGCAGCAGGCAAC
AAGAGATCCTTCACCGAAGCTTTGTGCAACTGGAAACTGATCCTTCTCATGAGCTCCTCCTTCACATGATCTCCAGACCC
AACTAATATAGCAACTTTCAACAGCTTCAGGAGAAACCTGCAAGAGCAACCTGAGCTCTTATCTGAAGGCAGCAACCATA
TTATGGTCTCCAC
>chr5D_4
---CT-CTCTCTGTTCCTCGTATCCGTAACAATGGCGGGGGATACCTTGTA-------AGCATTTGGATGGCCCAGACTA
ACCATGTAATTATTTTCTGCTTGCAGGCTGATTTATGCTGGTAAGCAGCTTGCAGATGACAAGACTGCCAAGGACTACAA
CATCGAAGGTGGCTCGGTCCTCCATCTTGTCCTTGCTCTGAGGGGTGGTTAC----TAGTTAAGCTGTAATGGAAACGCT
TGCGTCCTGAGAGAAGTGACCATTGGTGGCATGGAACCTGTGTT------GCAAAGAGATAATAACAAACTAGCTTTGCT
TAGTGGGAGGGGCTGTCTTCCATGTTATCTGCCTATATGATTTGACAAAACTACTCGCAAGTTTATCTGCCTCTGTTATT
AGCTCTG--------------CCATATATCATCTGAATTTTGGGTTGTGTCTCTGTCACTCTTTCCTGAATTCAAGATTG
CAAGTTCCATTTTAGGGCTAAATGCAGAAAGATTGATTGGAAAATAACA---ATATTCATGTGACGCTGGTTCGCCGAAT
CCTGAAAACATTCTGATTTGAGATGGCAGAATCAGTAATGGTTTAGATAGAAGCCACTTTGGGTCACATCGACCTCAAAT
GAAAAATATAGTACTGCAATCATTGTAATCCATGTTCTTTGTGTCCTGCAATCTGATGCTAGTATTCGAGAGTGTTTG--
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-------------------------------------------------------------------ACACAAACCCTTT
TATCTTGTTCTTCATAAACATTTCAGAGAAGAACAAACCCTAGT-AGATCTTTCCT------------CACCGGTAAGCT
ACAGGCCTATGCCTTAGATAACCACCATACAGAGAGCAGCATATTGAGCTGCTTACAGTCCTCCCTCACATATTTTCTCT
TCATTGACAAGGGCAAGGAGCAAACAAAAATGATGAGCATCAGCTGATAACTTCTCTTTCCTGTACAAACCTAACCCAAA
GCTAAACTAAAACAAGATGGGGA---AGCAGTAAGAAGAGCCCCTACGAAACAGAATACCTTCTGTTCCTAAGAGGGGGG
AGAGGAGAGGGCTTCACTTCCGTGGGCTTTGCCGTCGATGGCGGGCTCTGTGAGCTGCCGGACGTCTCTGAACCCTTGCC
GTTCTCTCCATGCCCCTTGCTGCTCCATAGCTTGTCGAATATCCTCCTCGACCGCGACTGCAGCAGGAGGCCTCCCAGTT
GGTCCTTGAAGCTGTTTCTGCCAACAACCTGGTCCTTGAAGCTGTTTCTGCCAACAACTTGATCCTTGAAGCTGTTTCTG
CCTCCCCTGAGCTCGACGTGCCGGTCCTCGCCCTCTCCTCTCGCGCTTAGGCTTGTCACTTGCTTATCCAGCTTGTTCGG
GTGCCTGGGTATCCGCCTTTCGCAGTGCTCGCTTTGTTCCTGCACAGGCTTTGCACAAGCATGCTCTCCGCCGTCAGTTG
GAGCTGGTACACTGCTTGAACCCGCCCTCAGCTGCTGGAAGAAGAGGACCTGCACCACCACCCGGAGAGGCAGGCGGTCG
TTTTGTGTGGCGTGCACGCATGCATCTGTGGAAAGCTTCTTGACATCTATCAGGCCGCAAATCTTCTTTTTGTCTGCTTT
GTTTATGTCTGGATGTTCCTGGTTAGAAAGAAGCAAATGATCAGGTGCGGTTATGGTCTTCTAAA-GGTGAGATAGCATA
CAGGTGATTTATCAAGTCTGCTTCCATGCTT-ACCAAAGACTAGTATAACTATGTTTCCGATTTGTA--AGTTTATTAGC
ATCAAGTGTTCATTCATCGTATAGCAAAAAGTACTGACAGCAACCATTGAGCAAATTTAGGTTCATCAAGTGCATTGAAC
ATACCTTGATATACGCATCAACCGCGTAGTATAGGCCGTCATGAACAGGTCTAGCTGCTTCTGGCACCGCCGTAGCTAGT
TCTACAAAGTTGGAGAATTCAAGGTCTGGATCTGCAGCTACTTCGGATAGGTACCCATCAACCAACTCCCCTAGAGCCAA
AGTGGATTCTTGCTCAAAGTTGAGCTCAATCATTTTCTCATCAGATTTCTCGACAAAATCGCCATTGTGAGATAGTGCTG
TTCTTGCGACAAATCTCTGGACAAGATTATGGACCAACCGAACATCATGCATTCCCTCACTGGGGGAAGCAGCAGGCAAC
AAGAGATCCTTAACCGAAGCTTTGTGCAGCTGGAAACTAATCCTTCTCATGAGCTCTTCCTTCACATGATCCCCAGACCC
AACTAATATAGCAACTTTCAACAGCTTCAGGAGAAACCTGCAAGAGCAACCTGAGCTCTTGTCTGACGGCAGCAACCATA
TTATGGTCTCCAC
>SNPs
-------------------S------------S---------S-----------S-----S-------------------
---S-------------------------------S--------------------------------------------
-----------------------------------------------------------------------------S--
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-----------------------------------------------------S------S-------------------
-------------------------------S----------S------------S--------------------S---
----------S--------------------------S--------SS-SSS------------S---------------
---------------S----------------------------------------------------------------
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-----------------------------------------------------S-----S------SS----S-------
--S---S------------------------------S-S-----------------S----------------------
--------S--------------------------------------------------------SS-------------
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-----------------------SSS------------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------------S-----------------------------------------------S----
----------------S-----------S--S--S---------------------------------------S-----
-----------------------------------------------------------------------------S--
------S-------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-----------S-----------------S-------------------------S---S--------------------
-----------------------------------------------S------------S----S------------S-
----S--------------------------S----------------------S--S---------SS--S-------S
-------S------------------------------------------------------------------------
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-------------------------------------SS-----------------------------------------
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---------------------S-----------------------------S----------------------------
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>forward_1027
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-----------------------------------------------GCTGCTTACAGTCCTCCCAA-------------
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>reverse_2452
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---------------------------------------------------CGAGCTCTTATCTGACGGCA---------
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