>input_sequence_86996
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---------ATGCTGCAGCTGATGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCGGTGCGCAG
CCTCAGCCTCTTCGTGGAGGCCATGGAGACGCTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCCCGCTTCC
GCCTCGGCCTCTCCCGCATCTTCGCCGGCCTCGCGCGCGCCCTGCGCTAA------------------------------
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>chr4B_1_TraesCS4B01G290500
TGATTTGGTGTCCATCTCGTACCGTACGTACCACAGGCAAGGTCCCTCCACGAGAACCCAATTCT--TTTTCTCGGTCTG
CTTTGATTAGTCAG------------------------------------------------------------------
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----------------------------------------------------------------------TCTACTCTTG
GGGTCAGGTAGAGAAATTCCACAGGACCCGCTGAGTGGTTACTATCTTGTTTGTTCCCCTAACCCTAAGCCTAGAAGAGA
TCGTTTCAACCTTCCTTTTTTAAGGGTCGTTT----CAATCTTCGGTAACGGGCGGCCATTGGATGCCCATGTCA-----
---CGGAACAGACAC--ATAGGGATCACGGGATGTCACGCGGTACCGACCGCTCGGAAA-CTATAATCCAAACCCA----
-------GCTCGTAATCAAATTAGTACTACGTACTTGGCTTGCTTGCACACGTTACAAACGACCCGGTCCCATAAATTTA
CAGTAACCATGGCTTTCATCCACATATTTAACTGTTTTCGCATCTGAAAAACTGGAGCGGCACA-CGCAGCACAGCGGCA
GCCCCCTCGCGCCGTGGCGAATGGCGGTACGTGCCGGCGCCGCGCACCGTATGCGTCCGTGCCGAGCCCGAGTCCCCCAC
GTCAAGCGGACTGTCACGTACCTACGCCGATCTTATCGAGTTATCCCCTCCGCCGCCGGGCTATAAATCCGAGCCCGAGA
AGGACAAGGCTCGCTCACAAACCCAGCCAAAGCCG-CCGCTTTCCGCTTCCCCA-CTCCGCACCGCACCGAATCGCCCTC
CCCCCCTCCCCGTGGCC-----------GCGAAGGCGAGGGCGCGCGCTCCACCAACCACCAACCCCCCACGCGCGCACC
GCGAGGCCGAGA------------CAGAGCGCGCGATCA---CCACCACAAGAGGAGCTCCCCGCACCACCACCACCTCA
CAGTCCGTCCATCCGTCCGTCCATATAACCCTCGCCTTCTTGGTACCGGCTGCTCGATCGACCGGGCAAG-AAGAAGAAG
CAAGAAGCATCAGGAGAGAGC------------GAGAGCTAGCTGGATCTGCTCGTGGCGGGGATCGAAC---AAGAGGA
GCGCTGGCGATGCTGCAGCTGATGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCGGTGCGCAG
CCTCAGCCTCTTCGTGGAGGCCATGGAGACGCTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCCCGCTTCC
GCCTCGGCCTCTCCCGCATCTTCGCCGGCCTCGCGCGCGCCCTGCGCTAAGC--CGGACGCGTCCGGCAAGCAGATCGAT
C---------CTTCTCCTTCTTCTTCTCGCCGTAGGTACACGTGCGCTACACCATGGACA-GGGCCACGCCCCCTTGCGC
AGCGAAGCGGCCGTGC---------TCGTCCTGGATCTTGATTACTTAG--------------------------CTTCA
TATAGTACTAC-------TAGTTGCTAGCTTTGTTCTCGTTTTGAGTAGCATTTAGATAAGGAAATGGGTAATAATCTCT
GCCCGAAGAGGGCTTTTTTTGTGAGAGATCGTGAGAAGATACATACAGTGTTCTTATGTGGTGGGTGCGATGCGAGGCAG
TCCATGAGAAAGTTTGTTGTCATCTGTACATAAATCATACTGCTTGCTACCAGTTGGGAAAGTTTGTGTGTTCTTGAGAT
GTTGATCGAACTGTTTTGAGTTGTA------------ATGGAAGAGCTTGACTTGTTGATTCGGTCAGTGTCATATCTGT
GTATCCGTATGCGCAAATCAGGTTCCGCAATTTCTGTTGGAGTGACGATGATGA--------------------------
-----------------AATGCCAACAACTCCCATCATCAAATTTCTTTTCTGTTCGTGCGCACTGCGGAGGAAATGCTA
GTGTAACAACTCGTCCAATTTCTTTCTCGAGCGCACT-------GAGAATTTAGTGGCAATAGACAAAACGAGGAAGAGA
AGATGGGGGG-AACATGCCAGCACTTCCCGGCCTCCCTGCGACCGGTCGGTTTGCGGCGTTAGGTTTGGCGACTTGGCAG
AACCGCGTTCTCTAATCTGCAGAACGATCGCGACCTCTCCCTCCCCGACGCGGTGATGGT----TCAATCAAATCAAAAT
CAATGT------------CAATGTTAATACTAGTTGTAGTTTGTGCGGCCATTGTG-----CCTCGCACGCTCCGTTCAC
ACACACGCA----------GGTGTCACAA--AACTGTTCATGTCACATCCGGCCAGCTCGTGGCTCTGGCTGGCGTGCCA
GTGTGCCGACACTTGTAACAAGCTCCGACGGC------------------------------------------------
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-----------------------------------------------------------GTCACGGAGATCACGTCCACA
GTAACTGTACTCAATATTTTGGAGGAG
>chr4D_1
TGATTTGGTGTCCATCTCGTACCGTACCGCACAGG-----------TCCACAAGAACTCAATTCTTCTTTTCTCGATCCG
CTTTGATTAGTCAG------------------------------------------------------------------
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----------------------------------------------------------------------TCTTG-CTGG
GGGTCAGGTAGTGAAATTCCACAGGACCTGCTGAGTGGTTACTATCTTGTTTGTTCCCCTAACCCTT------GAAGAGA
TCGTTTCAATCTTCCTTTTTTAAGGGTCGTTTGTTTCAATCTTCGGTAACGGGCGGCCATTGGATGCGCATGTCA-----
---CGGAACACAGACATATAGGGATCACGGGATGTCACGCGGTACCGACCGCTCGCAAAACTAAATGAGTATTCCCTCTC
AGCTCG---TACTAATCAAACTGGTAGTACGTACTTGGCTTGCCTGCACACGCTATAAACGACCCGGTCCCATAAATTTA
CAGTAACCATGGCTTTCATCCACATATTTAACTGTTTTCACCTCTGAAAAAGCGGACCGGCACA-CGCAGCGGCAGC---
-CCCCCTCGCGCCGTGGCAAATGGCGGTACGTGCCGGCGCCGCGCACCGCGTGCGTCCGTGCCGAGCCGGAGCGCCCCAC
GTCAAGTGAACTGCCACGTACCCACGCCGATCTTATCGAGTTATCCCCTCCGCCGCCGGGCTATAAATCCGACCCCGAGA
ACGACAAGGCTCCCTCACAAACCCAGCCAGAGCCGGCCGCTTTCCCCTCATCCACCTCCGCACCGCACCGAATCT-----
-----CTCCCCCTCCCCGTGGCCGCGAGGTGAAGGCGAGAGCGCGCGCTCCACCAACCACCAATCCCCCACGCGCGCACC
GCGAGGCCGAGGCCGAGGCCAGGGCAGAGCGCGCGATCACCACCACCACAAGAGGAGCTCGCCGCGCCACCACCACCTCA
CAGACAGTCCATATAA--------------CTCGTCTTCTTGGTCGCTGCTGCTCGATCGACCGACCGGGCAAGAAGAAG
CAAGAAGCGGCAGGAGAGAGC------------GAGAGCTGGCTGGATCTGCTCGTGGCGGGGATCCAACAAGAAGAGGA
GCGCTGGCGATGCTGCAGCTGATGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCCGTGCGCAG
CCTCAGCCTCTTCGTGGAGGCCATGGAGACGGTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCGCGCTTCC
GCCTCGGCCTCTCCCGCATCTTCGCCGGCCTCGCGCGCGCCCTGCGCTAAGAGACGGACGCGTCCGCCGACCAGATCGAT
C---------CTTC---TTCTTCTTCTCGCCGTAGGTACACGTGCGCTACACCATGGGCAGGGGGCGCCCCCCCTTGCGC
AGCGCAGCGCAGCGGCTGTGCTCGTTCGTCTTGGATATTGATTACTTAG--------------------------CTTCT
ACGTA---TAC-------TAGCTGCTAGCTTTGTTCTCGTTTTGAGTAACATTTAGAGAAGAAAATGGGTAATAATCTCT
GCCCAAAGAGGAG--TTTTTGTGAGAGATCGTGACAAGATACAT--GGTGTTCTTATGCGGTGGATGCGAGGTACTCTAG
TCCGTGAGAA--TTTGTTGTGATCTGTACATAA-TCATAG----TGCTACCAGTTGGGAAAGTTTGTGT--TCTTGAGCT
GTTCATCGGTTGATCGAACTTTGTGATGCAATACTACATGGAAGACCTTGACTTGTTGATTCCGTCAGT-CCCCGTCTCT
GTATCTGTATGTGCAAATCAGGCTGTGTAATTTCTGTTCACTGCAGAGGGGAGGTAATGCTAACAACTCGTATGAATTTC
CTGTTGGTGCGAATGCGAATGCCAACAACTCCACCATCAAT-TTTCTTTTCTGTTCGTGCGCACTGCGGAGGAAATGCTA
ATATAACAACTCGTCCAATTTCTTTCTCGAGCGCACT-------AAGAATTTAGCAGCGATAGACAAAACGAGGAAGAGA
AGATTGGGGGGAACATGCCAGGAGTTCCCGGCCTTCCCGCGACCGGTCGGTTTGCGGCGTTAGGTTCGGCGACTTGGCAC
AGCCGCGTTCTCGAATCTGCAGAACGATCGCGACCTCTCCCTCCCCGACGCGG---TGGT----TCAATCAAATCAAAAT
CAATGTTAAC------------------ACTAGTTGTAGTTTGTGCGGCCATTGTGTTGTGCCTCGCACGCTCCGTTCAC
ACGCAGGTGTCAC-------------CAA--AACTGTTCATGTCACATCTGATC-----------CTGGCTGGCGTGCCA
GTGTGCCGACACTTGTAATAAGCTCCGACGGTGTCACGGAGATCACGTCCACAGTAACTGTACTCAATATTTTGCAGGAG
TGGATGAGATCTTTAATCTTTTGGAAGGATAGACATTGGTTAGGCCGCGCTATAATATTGCACCCGCGGGGAACAAGGAG
CATCGTACTTCATACGTGGTGCTATTTTATTTTCTATTTACATGTAAAACAAGTGGGCTTGTCGATGTCAACAATGCTCT
TTACCCGTAAAATTCGAAGGGGGGAAGGCGATGAGACGGCCCAAGGTTCTAGACAGGAGACGCCACCTAATCATTTTGTT
ACTCCATGGCAGCAGCAGCCAGAGGCCGGCGTGTGGCAGTTGTTTAACCTTACCTTGGGCATAGTTGCACGATTTCAACC
GCGTTTTCCGGTTGACCTGCACTAGTGGCGCGCGGAGCACGCGCCATTCCTGGCCCTGTATCTCTTGCCGCGGATCTGAG
AGTCCATGTGGCGACAAGACGAACGGTATCACGTCTCTATCCATGCTTAGTAAATCTCTCTCCCTCCAGCACGGGCCTTC
TCTCCATGGCGATGAAATGGCAGAAGTTTCTAGAAGGAGAACGCCACCTAACATTCCGTACCAGCAGCACCCAAACACCG
GCCTGTGCCAGTTGCTATTAACCTTCAGTATCAACAGGGTACCTTGCCGGGTTATATTTATCGAGTCTAAAAAAAGGTAT
ATTTATCTTTGCTCGTTCTTTTTTTTTTTGCAGGAGAAATACTTGTATTACTCAATCACAAAGTCTTTACAATCATCTGC
TGCAATTTCGTTCTTCAACCGCATTTTCCAGTTTTTTTTTCTGAATAAGCTCCGACGGTGTCACGGAGATCACGTCCACA
GTAACTGTACTCAATATTTTGCAGGAG
>chr4A_1
TGATTTGGTGTCCATCAGGCGCCGTACGTACCACAGGCAAGGCCCCTCCACAGGAACCCAATTCT--TTTTCTCGGTCTG
CTTTGGATTAGTCAATCTTGCTCGGACACGGATCAGGTGACATGCATCTTTGCATGTCACCGTGTGACTTGCGGTTCAAA
TTTATATTTAAACATTGTAAAAAAATCTGAAAAAAAATCATGCATATTCATAGCACATATTAAGATAATCCTTAAAAAAT
TCAGATCAAAATTCGAAACATACATCAAGAAGTAAAAAAGAGTCAAGAAGTAAAAAAGAGAAATCTGTCACTTTTTTGCT
TCTCGGTGTATGTTTCGAATTTTGATCTGAATTTTTTAGGGATTATCTTAATATGTGTTGTGAACATGCGTGATTTTTTT
TTAGATTTTTTTGCAATGTTTAAATATGAATTTTTGCCGCAAGTCCCACGGTGACGTGATCCCCTGTCCATCTTG-CTCG
GGGTCAGGTGCAGAAATTCCACAGGATCTGCTGAGTGGTTAGTGTCTTGTTTCCCTAAGCTAACCTT------GAAGAGA
TCGTTTCAAACTTCCCTTTTTAAGGGCCGTTGCAATCTTCG---GGTAACGGGCGGCCATTGGGTGCGCATGTCAGTATG
TCACGGGACACAGACATGC--GGATCACGGGATGTCACGTCGTACCGACCGCTCGCAAA-CTAAAAGAGCGTCCCCTCTC
AGCTCGCGCTACTAATCAAACTAGTGGCACGTACTTGGCTTGCTTGCACACGCTACAAGCGACCCGGTCCCGTAAATTTA
CTGTAACCATGGCTATCATCCACATATTTAACTGTTGTCGCCTCTGAAAAACCGGAGCGGCACAACGCAGCACAG-----
-------CGCGCCGTGGCAAACGGCGGTACGTGCCGGCGCCGCGCACCGTGTGCGTCCGTGCCGAGCCGGAGCCTCCCAC
GTCAAGTGAACTGGCACGTACCCGCGCCGATCTTATCGGGTTATCCCCTCCGCCGCCGGGCTATAAATCGGAGCTCGAGA
AGGACAAGGCCCGCTCACAAACCCAGCCAAAGCCGGCCGCTTTCCCCTCCC------CCGCACCGCACCGAATCT-----
-----CTCCCCGTGGCCGCG-----GAGGCGAAGGCGAGGGCGCGCGCTCCACCAACTACCAAT----------------
------------------------------------------CCACCACAAGAGGAGCTCCCCGCGCCGCCACCACCACC
TCACAGACTCGCA-GTCCGTCCATATAACCCTCGTCTTCTTGGTGGCCGCTGCTCGATCGATCGACCGGGCAAGAAGAAG
CAACAAGCGGCAGGAGAGAGAGAGAGAGGGAGGGAGAGGTAGCTGGATCTGCTCGTGGCGGGGGTCGAACAAGG---GGA
GCGCTGGCGATGCTGCAGCTGATGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCCGTGCGCAG
CCTCAGCCTCTTCGTGGAGGCCATGGAGACGGTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCCCGCTTCC
GCCTCGGCCTCTCCCGCATCTTCGCCGGCCTCGCGCGCGCCCTGCGCTAAGG--CGGACGAAGCGGCGCGGTGACACGCA
GATCCTTCTTCTTC---CTCTTCCTCTTGCCATAGGTACACGCCCCATGCCGCCGGTGGCATGCGTGCGGGC--------
-----AGCGGCTGTGC---------TCGTCTTGGATCTTGTCTGCTCTTCTTCTTCTTCTGCCCTCTCATAGATTCTTCA
TATAGTACTGCTACTACGTAGTTGCGAGCTTTGTTCTCGTTTTGAGTAGCATTTAGAGAAGAAAGTGGGTAATAATCTCT
GCCCAAAGAGGAG--TTTTCGTGAGAGGTCGTGACAAGATGCATACGGTGTTCTTATGTGGTGGATGTGATGCAAGGTAG
TCCATGAGAAAGTTCGTTGTGATCTGTACATAAATCATAC----TGCTACTGGTTGGGAAAGTTTGTGTGTTCTTGAGAT
GTTCAAACTTTC---TTGAGATGTA------------ATGGAAGACCTTGACTTGTTGATTCGGTCAGTGCCCCGTATCT
GTATCTGTATGTGCAGAGGAGAGGAAATGCAAAAAAAACTCCCATC----------------------------AATTTC
CTGTTGGTGCGAACGCGAATGCCAACAACTCCCACACTCCA-----TTTTCTGTTCGTGCGCACCGCGGAGGAAATGCTA
GTGTAACAACCCGTCCAATTTCTTTCTCGAGCGCACTAAGAAATAAGAATTTAGCAGCAATAGACAAAACGAGGAAGAGA
AGATGGGGGGGAACATGCCAGCAGTTCCCGGCCTTG--------------------------GGTTCGGCGACTTGGCAC
AACCGCGTTCTCTAAAATGCAGAATGATCACGACCTCTCCCTCCCGGACGCGG---TGGTTCAATCAATCAAATCAAAAT
CAATGTTAATGTCAATGTCAATGTCAATACTAGTTGTAGTTTGTGCGGCCATTGTG-----CCTCGCACGCTCCGTTCAC
ACGCACGCACGCACGCACAGGTGTCACAAAGAACTGTTCGTGTCACATCCGGCCAGCTCCTGGCTGTGG-----GTGCCA
GTGTGCCGACACTTGTAACAAGCCCAGACGATGTCACGG-----------------------------------------
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-------------------------------------------------------------------GATCACATCCACA
CC----GTGCTAAATATTTTGGAGGA-
>SNPs
------------------------------------------S--------S----------------------------
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-------------------------------------------------------------------------SSS--S-
----------------------------S-------------------------------------SSSSSSS-------
---------S---------------------------------------------------------S------------
----------S-S------------------------------------------S-------S--SSSS-S---S----
----------SS--------S-----S-------------------------S---------------------------
-----------------------------------------S----------S----------------------SSSSS
S-----------------S-------------------------------S-----------------S---S-------
------S-S----S--------S---------------------------------------------------------
---------------------------------------------S--S-------------------------SSSSSS
SSSSS----------------------------------------------------------S----------------
-----------S-----------------------------------------------------S--------------
---S-S------SS--------------------S---------SS-S----------------SS-SS-----------
--------SS----------------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------------------------S------------------------------------------------
---------------------------------------------------S--------------S-S-----------
--------------SSS----------------------------------------S------S-S-------------
----S------S------------------S-------------------------------------------------
---------------------------------------------------------S---S------------------
----S------SSSS-------------------S-----------S-----------------S--------S---S--
--------------------S-------------------SSSS------------------------------------
---S----SSSSS-S------------------------------S------------------------S-SSS---S-
-----S-----S----------S-SS-S----------SSSSSS--SSS-SS-S--------------------------
----------------------------------SSS----S--------------------------------------
--------------------------------------------S---------SS------------------------
-----------------------S----------S--S----------------------------S------------S
-----------------------------------------------------SSS------------------------
------------------------S-------------------------------------------------------
--S--------------------------------------------------------S--------------------
-------------------------------S------------------------------------------------
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>forward_1293
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-------------------------------------------------------------------------CACCTCA
CAGTCCGTCCATC-------------------------------------------------------------------
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>reverse_2752
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-------------------------------CGTCACGGAGATCACGTCC------------------------------
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