>input_sequence_86995
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ATGGAGATCAGGCCAATGGTAGCCCTGCGTGCTGCCC
TAGTAGGCGGTGTAGCTGCATTCGCAAAGATCGCCGGGGCGATGAAAGCTGCAGGCGGCGTGAAGGTTGGTGCGGCAGCT
GCAGCCATGACAGCCGCAGCGACGGCTGCCGTATCAGGAAAAGACGCGGGTAATGATAACCAAAAGCCGGGGGCAACAAA
ATGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr4A_1_TraesCS4A01G401000
AAAGAAAATCAACTCTTCAATCCACACAG---ACAAGCCCGTCCTCTCC----CCGCACCCTTCTTCCCTCTTCCTCCCG
CGGACCTCCCGACCCAAAGATCTCTTCCGATCCGCCGCCGCCTCCCCTACAGCCGCCGCCGCGCCGTGCCTTAGCGCCAG
CCACCGCCGACCCTTCAGCCCGCTCCCCACCCCTCACCCCACCCCCCTCGTACTCGCGCCCATCGCCGCCCCCGGT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TGCCCTCATCGTCGCATCGCGTTCCCGCCCTCTCCGCCCCTGCCGCAGTCTTTGGGTCCTGAGGTATGTGCCT
GTCCTCATT---CATCGATTGGTCGAACCCCACTTGACCCTCGCAATTTCTGGGTGCGCCGGTGCACGACCGGCGTAGCC
TCCAGATCCACCACCCATGGCTAGTTAGACGGGCCAGTTCTAATGAGGTTGGTATATCTGAATGATTCGATGCACCTGTG
AGAATGACGCAATTAGAAGTCGTGGCACTATCCTGTTGAGCATGTGTTTTTGTTAAGTTTTATCTGCATGATGCTGAGGT
AGCAGAGTTGTAGTCAATTTAAGCGGGTGCTTGGTGCGTTTGACATAACTGCTTATCCCACTGGAGTATACTCCACGG--
------GAGGCTCAGACATTATCTTTGGGCCAAAAATGAGATACTCCCTCCGGTCCGAATTAAACGACTCAGCCTCTATA
CAATATCCATTTTATATTGTATCAGAGAGAGTAATTCTGTTTAG----------AGTGGTTTGGTTAGTTCTGCATCTCT
GGCTATCTTGTGAGTTCATTTGGCCATTCACAGCATGTGTAGTG---TTAAGAGGCCATGTGTGCTTTTTCTATGCTAAA
ACTACATAAATGC----------------------------------------------------------TAGACTATA
CCATCATTTTTTCTTCTTCTTTTACCCATGTAAAAATATTGAAAAATGCAGTCACATCCAACTTCCTTGAAATGTATTTT
ACAAGTG-------------TTCA--------------------------------------------------ACTGTG
CTGAAATTGCTCATTTATGCGTCAACTGCTCCAGGAACACACCATGGAGATCAGGCCAATGGTAGCCCTGCGTGCTGCCC
TAGTAGGCGGTGTAGCTGCATTCGCAAAGATCGCCGGGGCGATGAAAGCTGCAGGCGGCGTGAAGGTTGGTGCGGCAGCT
GCAGCCATGACAGCCGCAGCGACGGCTGCCGTATCAGGAAAAGACGCGGGTAATGATAACCAAAAGCCGGGGGCAACAAA
ATGATACG---TGCCACGGATTTGCTGGAGAAGCAGCGTTCTAAAATGCTTCTCCATAGCGTGTAGACCAGCATTCGGCA
GTTTATCAGTGCCGAAGAGCTGTGGAAGCTAATCGTGGCCTTCGGGAGGAGGCCGCATTCGCAATAAATAAGTTTTGCCA
GAGCAATTCCCATGATAATACATGTGTTTTTGTAACTCGGGGTATAATGTC---------CCGA-TTTTTTCTTCCTGTT
GATTGTTTTGCTCCCATGATACATT---ATCAGTGCTGAACTGCCCTGAAACTGTAGTGTCAGGCACCAAATTCCAGGAC
CGTGCCAGTGCTAATTCCTCAGTAAACGGTTCTAGTAAGCACATGCATCTCTCAGCATTTGGTCGCGGCCAAATTTTTTT
TTTTACTGCATCTGTTTGGCCATGTGCTGTGTCTAAACACTTGCAATGATAAATTCCTGAGCAGCTGGTTCTAAGCAAAA
GCTCCCTTTCAGCATTGCTTGCAATCTGTATGTGTCATCTGTTTTTCTGCTTGGTGATGGTGGTGCCTATCCAGGGCTCA
CACAATGGTGTGAGACAAGGCCAGTGTGTTATGTAGCTGTCACACAAGCCAAATACTACAATATCACGTTTTTTGTTGCT
GTTGAGAAAAACTTCAAAAAACAGCACGTGCTGTGATTATTTAAGGGCTACTGCAGTAACAAGTAGTGATTTCTTTTGAG
CATAGCAGCAAGTTGGTAATCACTTCTTCGCAAAAAAAGAGAGTTGGTAATCACTTAAAAGACAAGGAGGGGAGGATGCT
GTTTGGAGCTAGATTGGACTTGAAGCCCATTTCCAGCCGAAAATAATAAGAACTGAGCTAGAATTGGAGACGAATTGTAA
TTCCAGCTTTTATTGGACCCTGATAACGCAGTTTTCAATGGCAATTTTGGTGACGCTGATGACGCAGTTTCTAATGGCAA
TTTTAATGACGCGACGATGTCAATTTTAGTTGGCAAGCATGACAACTCCGTGCTCAATGT
>chr7A_1
AAAGAAAATCAACTCTTCAATCCACACACACCACAAGCCCGTCCTCTCCCTCCCCGCACCCTTCTTTCCTCTTCCTCCTG
CTGACCTCCCGACCCAAAGATCTCTTCTGATCCGCCGTCGCCTCCCCTACGGCCGCCGCCGCGCCGTGCCTTAGCGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------------------------
-------------------CACATCGCGTTCCCGCCGTCTCCGCCCCTGCCGCACTCTTCGGGGTTTGAGGTATGTGCTT
GTCCTCATC---CAGCGATTAGTCAAAACCCACCTGACCCCCACAATTTCTGGATGCGCCGGTGCACCGCCGGCATAGCA
TCCAGATCCACCCCTGGCTAGT--TTACACGGGCCAGTTCTAATGAGATTGATATATCCGAATGATTTGATGCACCTGTG
AGAATGATGCATTCAGAAGTTGTGGCACTACCCTGTCGAGCATGTGTTTTTGTTAAGTTTTATTTGCATGATGTC-TGGT
AGCAGATTTGTA-TCAATCTAAGTGGGTGCTTGGTGCGTTTGACATAACTGTTTATCCCACCGGAATATACTTCACAAGT
CCACATGAGGCTCAGACATAATCTTTAGGCTAAAAGTGAGATA-------------------------------------
---------------------------------AATCTTTC--------TAGGCAGTGGTTGTGTTAGTTCTGCATGTCT
GGTTATGTTGTGAGTTCATTTAGCCATTCAAAGGACCTGTAGGTGTTTTAAGAGGCCATGCGTACCTTTTCTATGCTAAA
ACCACATAAATGACATACAGAGAAATGACATTGTAACTGAAAGTGTACACCAT-----------------GTAGACTGTA
CAATCATTTC----TGTTCTTTTACCTGTGTAACAG-AATG-AAAATACAGTCACATCTAACTTCCTTGGAATGCCTTTT
ACAAGCGCAATTTGGTTGCATTTA--------------------------------------------------GCTGTG
CTGAAATCGCTCATTTCTGCATTAACTGCTCCAGGAACATACCATGGAGATTAGGCCAATGGTAGCCCTGCGTGCTGCCC
TAGTAGGCGGTGTAGCTGCATTCGCAAAGATCGCCGGGGCGATGAAAGCTGCAGGCGGCGTGAAGGTTGGCGCGGCGGCT
GCAGCCATGACAGCCGCAGCGACGGCCGCTGTGTCCGGAAAAGACGCAGGTACTGATAACCAAAAGCCGGGGGCAA---A
ATGATACG---TGCCATGGATTTGCTGGAGAAGCAGTGTTCTAAAATGCTTCTCCACAGCTTGTAGACCAGCATTCAGCA
GTTTATCAGTGCTGAAGAGCTGCAGAAGCTAATTGTGGCCTTCGGGAGGAGGTCGCATTCACAATAAATAAGTTTTGCCA
CCGCAATTCCCATG---ATACATGTGTTTTTGTAACTCAGGGTATGAGAACCGTGATCCGCTGA-ATTTTGTTTCTTGTT
GATGA-TTTGCTCCCATGATACATT---ATCAGTGCTGAAGTGCCCTGAAGCTGTACTGTCAGGCACCAAATTCCAGGAC
CGTCCTGGTGCTAATTCCTCAGTAAACGGTTCTATCAAGCACATGCATCTTTCAGCATTTGCTCGAGACCTATGTTTGT-
---------ATCTGTTTGGTCATGTGCTGTGTCTAAACACTTGCAATGATAAACTCCTGAGCAGCTGGTTCCAAGCAAAA
ACTTCCTTTCAGCATTGCTTGCAATCTGTATGTGTCATATGTTTTGCTGCTTGGTGATGGTGGTGCCTATCCAGGGCTTG
CACAATGGTGCGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>chr7D_10
---------CAACTCTTCAAGCCACACACACCACAAGCCCGTCCTCTCC----CCGCACCCTTCTTCCCTCTTCCTCCTG
CTGACCTCCCGACCCAAAGATCTCCTCTGATCTGCCGCCGCCTCCCCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGCCCTCATCGTCACATCGCGTCCCCGCCGTCTCCGCCCCCGCCGCAGTCTTTGGGTTCTGAGGTATGTGCTT
GTCCTCCTCATCCAGTGATTAGTCGAACCCCACTTGACCCCCGCAATTTCTGGGTGCGCCGGTGCACGGCCGGCATACCA
TCCAGATCCACCCCTGGCTAGT--TTACACGGGCCAGTTCTACTGAGATTGATATCTGAATGAGC-------CACGTGTG
AGAATGATGCATTCAGAAGTTGTGGCACTATCCTGTCGAGCATGTGTTTTTGTTAAGTTTTATCTGCATGATGTTGTGCT
AGCAGAGTTGTGGTCAATCTAAGGGGGTGCTTGGTGCGTTTGACATAACTGTTTATCCCACTGGAGTATACTCCACAG--
------GAGGCTCCGCGATAATCTTTAGGCCAAAAACGAGATA-------------------------------------
---------------------------------ATTCTGTTTAGGCATTTAAGCAGTGGTTTGGTTAGTTCTGCATCATT
GGTTATCCTGTGATTTCATTCAGCTATTCACAGCATGTGTAGGTG-TTTAAGAGGCCATGTGTACAAAAACGTCTTATGT
TTAGAGTTTAGCCTACAAAAACGTCTTATATCTAACCTACAAAAACATCTTATGTTTTGAGACGGAGGCAGTAGACTATA
CCATCAGTTTTTCTTCTTCTTTTATCCATGTACAAG-ATTGAAAAATACAGCCACATCTAACTTCCTCAAAATGTACTCC
CTCCGTTTCTAAATACAAGCCTTTTTAGAGATTTCAATAAGGACTACATACGGATGTATATAGACGTATTTTAGACTGTG
CTGAAGTTGCTCATTTATGCATTAACTGCTCCAGGAACATACCATGGAGATCAGGCCAATGGTAGCCCTGCGTGCTGCCC
TAGTAGGCGGGGTAGCTGCATTCGCAAAGATCGCCGGGGCGATGAAAGCTGCAGGCGGCGTGAAGGTTGGTGCGGCGGCT
GCAGCCATGACAGCCGCCGCGACGGCTGCCGTATCCGGAAAAGATGCGGGTAATGATAACCAAAAGCCGGGGGCAA---A
ATGATACAACCTGCCATGGATTTGCTGGAGAAGCAGTGTTCTAAAATGCTTCTCCATAGCGTGTAGACCAGCATTCAGCA
GTTTATCAGTGCTGAAGAGCTGCGGAAGCTAATCGTGGCCTTCGGGAGGAGACTGCATTCACAATAAATAAGTTTTGCCA
GCGCAATTCCCATG---ATACATGTGTTTTTGTAACTCAGGGTATAAGAATTATGATATCCTGATTTTCTTCTTCTTCTT
GATTGTTTTGCTCCCATGATACATTATAATCAGTGCTGAAGTGCCCTGAAACT--AGTGTCAGGTACCAAATTGCTGTGT
CTAAACGG------TTCCTCAGTAAACGGTTCTATTAAGCACATG-----TTCAGCATTTGCTCGCGACCTATGTTTGT-
---------ATCTGTTTCACTGTTTGGCTATGTTGCTCACTTGCAATGGTAAATTCCTGAGCAGCTGATTCTAAGCAAAA
GCTTCCTTTCAGCATTGCTTGCAATCTGTATGTGTCATCTGCTTTGCTGTCTGGTGATGTTGGTGCCTATCCAGGGCTCG
CACGATGGTGCGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>SNPs
----------------------------S-------------------------------------------------S-
-S-------------------------S-------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S---------------S---------------------------S-------------S-
--------S-----S-----S-------------------S---------------------------S-----S----S
------------S-SSSSSSS-SS---S-------------------S---S------S--------S------------
-------S---S-S------S---------------S------------------------------------S--S---
------------------S----S---------------------------S------------------------S---
-------------------S------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
--S------------------S--------------------SS-------------------S-S--------------
--S-----------------------------------------------------------------------------
-----------------------------------SS----------S----------S---------------------
----------------------S---------------------------------------------------------
--------------------S-S----------------S----------------------------------------
----------------------------------------------------------------------------S---
-----------------------------------S----------------------------------------SSS-
----------------S-------------------S---------------------------------------S---
------------S---------S-------------------------------------S-------------------
-S------------SSS---------------------S--------SSS-----------S-------------S----
----------------------------------------S---------------------------------------
---S--S---------------------------S---------------S----------S-----S--S-SS---S-S
SSSSSSSSS-----------------------------------------------------------------------
---S-----------------------------------------S---------------------------------S
----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1021
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TACTCCCTCCGGTCCGAATT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>reverse_2599
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TGGCAATTTTGGTGACGCTG----------------------
------------------------------------------------------------
