>input_sequence_86991
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-------------------------------------------------------------------ATGCTGCAGCTGA
TGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCCGTGCGCAGCCTCAGCCTCTTCGTGGAGGCC
ATGGAGACGGTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCCCGCTTCCGCCTCGGCCTCTCCCGCATCTT
CGCCGGCCTCGCGCGCGCCCTGCGCTAA----------------------------------------------------
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>chr4A_1_TraesCS4A01G013300
TTGATCTGAATTTTTTAGGGATTATCTTAATATGTGTTGTGAACATGCGTGATTTTTTTTTAGATTTTTTTGCAATGTTT
AAATATGAATTTTTGCCGCAAGTCCCACGGTGACGTGATCCCCTGTCCATCTTGCTCGGGGTCAGGTGCAGAAATTCCAC
AGGATCTGCTGAGTGGTTAGTGTCTTGTTTCCCTAAGCTAACCTT------GAAGAGATCGTTTCAAACTTCCCTTTTTA
AGGGCCGTTGCAATCTTCG---GGTAACGGGCGGCCATTGGGTGCGCATGTCAGTATGTCACGGGACACAGACATGC--G
GATCACGGGATGTCACGTCGTACCGACCGCTCGCAAA-CTAAAAGAGCGTCCCCTCTCAGCTCGCGCTACTAATCAAACT
AGTGGCACGTACTTGGCTTGCTTGCACACGCTACAAGCGACCCGGTCCCGTAAATTTACTGTAACCATGGCTATCATCCA
CATATTTAACTGTTGTCGCCTCTGAAAAACCGGAGCGGCACAACGCAGCACAG------------CGCGCCGTGGCAAAC
GGCGGTACGTGCCGGCGCCGCGCACCGTGTGCGTCCGTGCCGAGCCGGAGCCTCCCACGTCAAGTGAACTGGCACGTACC
CGCGCCGATCTTATCGGGTTATCCCCTCCGCCGCCGGGCTATAAATCGGAGCTCGAGAAGGACAAGGCCCGCTCACAAAC
CCAGCCAAAGCCGGCCGCTTTCCCCTCCC------CCGCACCGCACCGAATCT----------CTCCCCGTGGCCGCG--
---GAGGCGAAGGCGAGGGCGCGCGCTCCACCAACTACCAAT--------------------------------------
--------------------CCACCACAAGAGGAGCTCCCCGCGCCGCCACCACCACCTCACAGACTCGCA-GTCCGTCC
ATATAACCCTCGTCTTCTTGGTGGCCGCTGCTCGATCGATCGACCGGGCAAGAAGAAGCAACAAGCGGCAGGAGAGAGAG
AGAGAGGGAGGGAGAGGTAGCTGGATCTGCTCGTGGCGGGGGTCGAACAAGG---GGAGCGCTGGCGATGCTGCAGCTGA
TGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCCGTGCGCAGCCTCAGCCTCTTCGTGGAGGCC
ATGGAGACGGTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCCCGCTTCCGCCTCGGCCTCTCCCGCATCTT
CGCCGGCCTCGCGCGCGCCCTGCGCTAAGG--CGGACGAAGCGGCGCGGTGACACGCAGATCCTTCTTCTTC---CTCTT
CCTCTTGCCATAGGTACACGCCCCATGCCGCCGGTGGCATGCGTGCGGGC-------------AGCGGCTGTGC------
---TCGTCTTGGATCTTGTCTGCTCTTCTTCTTCTTCTGCCCTCTCATAGATTCTTCATATAGTACTGCTACTACGTAGT
TGCGAGCTTTGTTCTCGTTTTGAGTAGCATTTAGAGAAGAAAGTGGGTAATAATCTCTGCCCAAAGAGGAG--TTTTCGT
GAGAGGTCGTGACAAGATGCATACGGTGTTCTTATGTGGTGGATGTGATGCAAGGTAGTCCATGAGAAAGTTCGTTGTGA
TCTGTACATAAATCATAC----TGCTACTGGTTGGGAAAGTTTGTGTGTTCTTGAGATGTTCAAACTTTC---TTGAGAT
GTA------------ATGGAAGACCTTGACTTGTTGATTCGGTCAGTGCCCCGTATCTGTATCTGTATGTGCAGAGGAGA
GGAAATGCAAAAAAAACTCCCATC----------------------------AATTTCCTGTTGGTGCGAACGCGAATGC
CAACAACTCCCACACTCCA-----TTTTCTGTTCGTGCGCACCGCGGAGGAAATGCTAGTGTAACAACCCGTCCAATTTC
TTTCTCGAGCGCACTAAGAAATAAGAATTTAGCAGCAATAGACAAAACGAGGAAGAGAAGATGGGGGGGAACATGCCAGC
AGTTCCCGGCCTTG--------------------------GGTTCGGCGACTTGGCACAACCGCGTTCTCTAAAATGCAG
AATGATCACGACCTCTCCCTCCCGGACGCGG---TGGTTCAATCAATCAAATCAAAATCAATGTTAATGTCAATGTCAAT
GTCAATACTAGTTGTAGTTTGTGCGGCCA-----TTGTGCCTCGCACGCTCCGTTCACACGCACGCACGCACGCACAGGT
GTCACAAAGAACTGTTCGTGTCACATCCGGCCAGCTCCTGGCTGTGG-----GTGCCAGTGTGCCGACACTTGTAACAAG
CCCAGACGATGTCACGGGATCACATCCA-
>chr4D_130
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-------------------------------------------------TCTTGCTGGGGGTCAGGTAGTGAAATTCCAC
AGGACCTGCTGAGTGGTTACTATCTTGTTTGTTCCCCTAACCCTT------GAAGAGATCGTTTCAATCTTCCTTTTTTA
AGGGTCGTTTGTTTCAATCTTCGGTAACGGGCGGCCATTGGATGCGCATGTCA--------CGGAACACAGACATATAGG
GATCACGGGATGTCACGCGGTACCGACCGCTCGCAAAACTAAATGAGTATTCCCTCTCAGCTCG---TACTAATCAAACT
GGTAGTACGTACTTGGCTTGCCTGCACACGCTATAAACGACCCGGTCCCATAAATTTACAGTAACCATGGCTTTCATCCA
CATATTTAACTGTTTTCACCTCTGAAAAAGCGGACCGGCACA-CGCAGCGGCAGC----CCCCCTCGCGCCGTGGCAAAT
GGCGGTACGTGCCGGCGCCGCGCACCGCGTGCGTCCGTGCCGAGCCGGAGCGCCCCACGTCAAGTGAACTGCCACGTACC
CACGCCGATCTTATCGAGTTATCCCCTCCGCCGCCGGGCTATAAATCCGACCCCGAGAACGACAAGGCTCCCTCACAAAC
CCAGCCAGAGCCGGCCGCTTTCCCCTCATCCACCTCCGCACCGCACCGAATCT----------CTCCCCCTCCCCGTGGC
CGCGAGGTGAAGGCGAGAGCGCGCGCTCCACCAACCACCAATCCCCCACGCGCGCACCGCGAGGCCGAGGCCGAGGCCAG
GGCAGAGCGCGCGATCACCACCACCACAAGAGGAGCTCGCCGCGCCACCACCACCTCACAGACAGTCCATATAA------
--------CTCGTCTTCTTGGTCGCTGCTGCTCGATCGACCGACCGGGCAAGAAGAAGCAAGAAGCGGCAGGAGAGAGC-
-----------GAGAGCTGGCTGGATCTGCTCGTGGCGGGGATCCAACAAGAAGAGGAGCGCTGGCGATGCTGCAGCTGA
TGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCCGTGCGCAGCCTCAGCCTCTTCGTGGAGGCC
ATGGAGACGGTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCGCGCTTCCGCCTCGGCCTCTCCCGCATCTT
CGCCGGCCTCGCGCGCGCCCTGCGCTAAGAGACGGACGCGTCCGCCGACCAGATCGATC---------CTTC---TTCTT
CTTCTCGCCGTAGGTACACGTGCGCTACACCATGGGCAGGGGGCGCCCCCCCTTGCGCAGCGCAGCGCAGCGGCTGTGCT
CGTTCGTCTTGGATATTGATTACTTAG--------------------------CTTCTACGTA---TAC-------TAGC
TGCTAGCTTTGTTCTCGTTTTGAGTAACATTTAGAGAAGAAAATGGGTAATAATCTCTGCCCAAAGAGGAG--TTTTTGT
GAGAGATCGTGACAAGATACAT--GGTGTTCTTATGCGGTGGATGCGAGGTACTCTAGTCCGTGAGAA--TTTGTTGTGA
TCTGTACATAA-TCATAG----TGCTACCAGTTGGGAAAGTTTGTGT--TCTTGAGCTGTTCATCGGTTGATCGAACTTT
GTGATGCAATACTACATGGAAGACCTTGACTTGTTGATTCCGTCAGT-CCCCGTCTCTGTATCTGTATGTGCAAATCAGG
CTGTGTAATTTCTGTTCACTGCAGAGGGGAGGTAATGCTAACAACTCGTATGAATTTCCTGTTGGTGCGAATGCGAATGC
CAACAACTCCACCATCAAT-TTTCTTTTCTGTTCGTGCGCACTGCGGAGGAAATGCTAATATAACAACTCGTCCAATTTC
TTTCTCGAGCGCACT-------AAGAATTTAGCAGCGATAGACAAAACGAGGAAGAGAAGATTGGGGGGAACATGCCAGG
AGTTCCCGGCCTTCCCGCGACCGGTCGGTTTGCGGCGTTAGGTTCGGCGACTTGGCACAGCCGCGTTCTCGAATCTGCAG
AACGATCGCGACCTCTCCCTCCCCGACGCGG---TGGT----TCAATCAAATCAAAATCAATGTTAAC------------
------ACTAGTTGTAGTTTGTGCGGCCATTGTGTTGTGCCTCGCACGCTCCGTTCACACGCAGGTGTCAC---------
----CAA--AACTGTTCATGTCACATCTGATC-----------CTGGCTGGCGTGCCAGTGTGCCGACACTTGTAATAAG
CTCCGACGGTGTCACGGAGATCACGTCCA
>chr4B_135
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------------------------------------------------------CTTGGGGTCAGGTAGAGAAATTCCAC
AGGACCCGCTGAGTGGTTACTATCTTGTTTGTTCCCCTAACCCTAAGCCTAGAAGAGATCGTTTCAACCTTCCTTTTTTA
AGGGTCGTTT----CAATCTTCGGTAACGGGCGGCCATTGGATGCCCATGTCA--------CGGAACAGACAC--ATAGG
GATCACGGGATGTCACGCGGTACCGACCGCTCGGAAA-CTATAATCCAAACCCA-----------GCTCGTAATCAAATT
AGTACTACGTACTTGGCTTGCTTGCACACGTTACAAACGACCCGGTCCCATAAATTTACAGTAACCATGGCTTTCATCCA
CATATTTAACTGTTTTCGCATCTGAAAAACTGGAGCGGCACA-CGCAGCACAGCGGCAGCCCCCTCGCGCCGTGGCGAAT
GGCGGTACGTGCCGGCGCCGCGCACCGTATGCGTCCGTGCCGAGCCCGAGTCCCCCACGTCAAGCGGACTGTCACGTACC
TACGCCGATCTTATCGAGTTATCCCCTCCGCCGCCGGGCTATAAATCCGAGCCCGAGAAGGACAAGGCTCGCTCACAAAC
CCAGCCAAAGCCG-CCGCTTTCCGCTTCCCCA-CTCCGCACCGCACCGAATCGCCCTCCCCCCCTCCCCGTGGCC-----
------GCGAAGGCGAGGGCGCGCGCTCCACCAACCACCAACCCCCCACGCGCGCACCGCGAGGCCGAGA----------
--CAGAGCGCGCGATCA---CCACCACAAGAGGAGCTCCCCGCACCACCACCACCTCACAGTCCGTCCATCCGTCCGTCC
ATATAACCCTCGCCTTCTTGGTACCGGCTGCTCGATCGACCGGGCAAG-AAGAAGAAGCAAGAAGCATCAGGAGAGAGC-
-----------GAGAGCTAGCTGGATCTGCTCGTGGCGGGGATCGAAC---AAGAGGAGCGCTGGCGATGCTGCAGCTGA
TGATGGCGCTGGCCTTCTCGGCGGCGCCGCTGACGCTCTACGTGCCGCCGGTGCGCAGCCTCAGCCTCTTCGTGGAGGCC
ATGGAGACGCTGTGCCGCGAGTGCGCGCCCTACTCCCAGGGCGCCGTCTCCCGCTTCCGCCTCGGCCTCTCCCGCATCTT
CGCCGGCCTCGCGCGCGCCCTGCGCTAAGC--CGGACGCGTCCGGCAAGCAGATCGATC---------CTTCTCCTTCTT
CTTCTCGCCGTAGGTACACGTGCGCTACACCATGGACA-GGGCCACGCCCCCTTGCGCAGCGAAGCGGCCGTGC------
---TCGTCCTGGATCTTGATTACTTAG--------------------------CTTCATATAGTACTAC-------TAGT
TGCTAGCTTTGTTCTCGTTTTGAGTAGCATTTAGATAAGGAAATGGGTAATAATCTCTGCCCGAAGAGGGCTTTTTTTGT
GAGAGATCGTGAGAAGATACATACAGTGTTCTTATGTGGTGGGTGCGATGCGAGGCAGTCCATGAGAAAGTTTGTTGTCA
TCTGTACATAAATCATACTGCTTGCTACCAGTTGGGAAAGTTTGTGTGTTCTTGAGATGTTGATCGAACTGTTTTGAGTT
GTA------------ATGGAAGAGCTTGACTTGTTGATTCGGTCAGTGTCATATCTGTGTATCCGTATGCGCAAATCAGG
TTCCGCAATTTCTGTTGGAGTGACGATGATGA-------------------------------------------AATGC
CAACAACTCCCATCATCAAATTTCTTTTCTGTTCGTGCGCACTGCGGAGGAAATGCTAGTGTAACAACTCGTCCAATTTC
TTTCTCGAGCGCACT-------GAGAATTTAGTGGCAATAGACAAAACGAGGAAGAGAAGATGGGGGG-AACATGCCAGC
ACTTCCCGGCCTCCCTGCGACCGGTCGGTTTGCGGCGTTAGGTTTGGCGACTTGGCAGAACCGCGTTCTCTAATCTGCAG
AACGATCGCGACCTCTCCCTCCCCGACGCGGTGATGGT----TCAATCAAATCAAAATCAATGT------------CAAT
GTTAATACTAGTTGTAGTTTGTGCGGCCA-----TTGTGCCTCGCACGCTCCGTTCACACACACGCA----------GGT
GTCACAA--AACTGTTCATGTCACATCCGGCCAGCTCGTGGCTCTGGCTGGCGTGCCAGTGTGCCGACACTTGTAACAAG
CTCCGACGGCGTCACGGAGATCACGTCCA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----------SS-----------
----S--------------S-S--------SSSSSSSSS-S--------------------------S-----S------
----S----SSSS--SSSS----------------------S-----------SSSSSSSS---S----------SS---
-----------------SS----------------------------SS---------------S---------------
---S-S------------------------------S------------S---------S------------S-------
--------------S---------------------------S------------------------------------S
----------------------------------------------------S------------------S--------
-S--------------S------------------------------S----S---------------S-----------
----------------------------------------------------------------------------S---
-----------------------------------S--------------------------------------------
----------------------------------------------S--------S-SSSSSSSSSS-SS----------
----------------------S--S-------------S---------------------S----------------SS
SSSSSSSSSSS-----S------------------------S---------S----------------------------
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-----------------------------S--------SSS-S--SSS-SSSSS--SSSSSSSSSSSS-------S----
-S---S---S----------SS-SS-S-SS-SS-S-SSSS-S-S---SS--------------------S----------
------------------SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-SSSSSSS----
---S--------------------------------------S----------------------------------S--
-----S------------S--------------------------S--------------------------S-------
----------------------------SS---------------------------------SSSS--S--------S-
------------------------------------------------------S------------------S-SS--S
SSSSS-SSSSSSSSSS-S-SSSS------------------------------------------------S--------
--------------S--S------------------------S-------------------------S-----------
---------------SSSSSSS----------------------------------------------------------
-------------S-----------------------------------------------------------SS-----
--S----S---------------S--------------SSSS-------------------------SSSSSSSSS----
--S----------------------------------------------------------------SSSSSSSSSS---
-------SS--------S-------------------S-----S------------------------------------
-S-S----S--------SSSSSSSSS-S-
>forward_108
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--------ATTTTTGCCGCAAGTCCCAC----------------------------------------------------
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>reverse_2310
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---------------------------------------------------------------------CACGCACAGGT
GTCACAAAG-----------------------------------------------------------------------
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