>input_sequence_86974
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-------------------------------ATGGCCGGGTTGCGCTTGCATTGGAACGCTGTTAGAAGCACTGGGGAAC
ACTTAAAATGGAACGTCAGGTCGACTGGTCAGTCTGGTGCACCATCTATGGGTGCACTAGGGAGGTCTGGAGAATGGGAA
GGCCTCGTGCTCGACGGCGGTAGCAAGTGGTTCGTCTATGTCTCCATCCTGTTCAAAAGGAGAATGAACTAG--------
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>chr2A_1_TraesCS2A01G127000
CCGGCGACGAGGGGTGGCGAATGAGGGTGCCGACCGGCCGGACGGGGCTATGATTGATGGTCGAAGGTGACGCCAGGTTA
GATACTATACTCAATCAATCAATCTGCGACGGAATGCGTGTCACTCATGGCAA----CCGGCCGGCCGGGGAGTGGTTCG
AAAGAGGTTGGCGA------------------TTCTACCCTGCACATGCACCATCAGAAAACA-----------------
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------------------------------------------------------TAGCCCAAAGGCTGCCTGCGCAGTGC
GCACGGTGGGTGATCC--------------------------------------AGAGGAGATGTTTTCAGGTGAGGATG
AGACCGGTGCAACCGCCGG-CGTTTGTCAGAGATCGGTGCACCGCAGGCACCTCCGGTGATGATGATGATGATGA---GC
CCACGCTCCGACGGCAAGACACCAACGACAGTTCTCAGC-AAAAGTTTTGGCGAAGCAA-GGATGCATGAGAGCTCTGCT
GGCTC---ATTTTGTAGAGGAAGCAGTAAGCTTCACACAGCGACGCCTGCTAAAA-CCGTCACCGTCGTCACCAGCCAAC
CGACGAGTTTTTTTACTTTGACGCAGCAAGTCATCACCGTGCACTGAACACCCCGACGGTCGCGGCAGTTCAAAGTCAGC
GAAACCATTGCAGACCAGCACCGCCGTCACCACCACCAGCACCATGATGATGAGGCACCTCTA---CCGGCCATTCCTTT
CGTTCTGAACTCAGGAGTTGGAAGGAACACAGACGG------GACACCACCGCTCCCCAAATAGCTGCTGGGCAGAGGAA
AAACACAGCGCCTCACCCAAAACCACCCAGAGTGCAGCAATTCACTGCGGCAAGGCACTGAAACTTGATCTGACAACTAG
ATTTTTACATCTAGGAATGCTGGCAGCCTCGCTAAACCAGAACTGAACCAGCAAGCACCGTAACAGCAGCGTT-CTACTA
CCCTTCTGAATCTGACAGTCACACTGCATGAGCATCTCCCCTAATAAAACCTAAAGGAACCCTATGTATACAAAATAAGA
TCAAGGATGTTGACATGAATTGCTCCGCGGCATGGCCGGGTTGCGCTTGCATTGGAACGCTGTTAGAAGCACTGGGGAAC
ACTTAAAATGGAACGTCAGGTCGACTGGTCAGTCTGGTGCACCATCTATGGGTGCACTAGGGAGGTCTGGAGAATGGGAA
GGCCTCGTGCTCGACGGCGGTAGCAAGTGGTTCGTCTATGTCTCCATCCTGTTCAAAAGGAGAATGAACTAGATCAGATA
CATAGGTGAGTGCCAGCTGGAGAAACAATCTGCTATAGGAAGAACATGCCGTGGATTTACCAGCTTGATGATTTGATATG
ATATGGATAAATGTTAACCACTGAATCGTCAGAGGAACAACACGAGCTCCCACTGCTTCAACATGATATGGTACTCGTAA
CTCATTCTTTGGCCTTAATGAGCCCATAATGGTAACAAAAACCATACATGTAAAACTAGCACTATGATATTCC-------
---------------------TGCAGCAGTATTTTCATCACTTTTGGCCTATTGCTAAGAACATGATAGACCCAGCACAG
GAGCTTAGTGTGAACC-TTTGCTAGACCAAAAAAAAAACATGGGATCTAGTTCTGTGTATCACTATATCATCACAGCAGG
AAAGGAAAATTGTTAGATGTTAATTTCTTTTCAGCATGAAACATGTTTACATTCAACACAAACAAATTAGATACGTAAAC
AAAATTGGAGCCCACCTTGTGCATCATGAGTAAGTGCAGCACAACCAAAAACCAGTCACTTGTACTCAAAGACATCCCAA
TCAACACATAACCTC-ATAGTGCAACATGAATCACAAGTTCTGACCAGAAAGCATGGGAAGGAAACGGGGCCCAGATATT
TCCTATGTCAGCTCAGCCAAGAATGAAAACCATAATAAACACTTGTGGTGGCATAGTCAATAGCTCCAATGCTGCGCTTG
TCAGGTCAGCATATTTCCCTAAGGAAATGGCCAAAATACGATGAATCCACAAACATATATTTTTCCTTTTTGTAGATTAT
TATTACTGGGTTGCATCACCAATGTAATATCCTATAGCACAAAACTAAGCTGTCAGGTAGCTCAACAACCCAAGCTAATC
AGAAGGAATTCTCTACCAAAGCAGCAGCAAGACTGAACAGTACAAGCTCACGGAAAGTCATGCTGGAATGCACTGCTCTT
TTGACATATATCCTACAAAGTCAATAAGCTCAGGGGAACCTGAATATCCATCTCCAGTTCAG
>chr2D_8
-------CGAGGGGTGGCGAACGAAGGTGCCGACCGGCCGGACGGGGCTATGATTGATGGTCGAAGGTGACGGCAGGTTA
GATACCATACTCAATCAATCAATCTGCGACGGAATGCGTGTCACTCATGGCAACCGGCCGGCCGGCCGGGGAGTGGTTCG
AAAGCGGTTGGTGACAGCCAGGGGTTCCTACTTTCTACCCTGCACATGCACCATCAGAAAACA-----------------
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------------------------------------------------------TAGCCCAAAGGCTGCC-------TGC
GCACGGTGGGTGATCCGGC---------------------------AAAGGTCCAGAGGAGATGTTCTCAGGTGAGGATG
AGATCGATTCAACCGCCGCTCGTTTGTCAGAGATGAGTGCACCGCAGGCACCTCCGGTGATGATGATGATGATGATGAGC
CCACGCTCCGACGGCAAGACACCAACGGCAGTTTTCAGCAAAAAGTTCTGGCGAAGCAAAGGATTCATGAGAGCTCCTCT
GGTTCATTTTAC---AGAGGAAGCAGCAAGCTTCACACAGCGACGCCTGCTAAAACCCGTCACCGTCGTCACCAGCCAAC
CGACGAC---TTGGACTTTGACGCAGCAAGTCATCACCGTGCAC-GAACGCCCCGACGGTTGCGGCAGTTCCAAGTCAGT
GAAACCATGGCAGACCAGCACCGCCGTG-CCACGACCAGCACGATGATGATAAGGCACCACTGATTCCGGCCTTTCTTTT
CGTGCTCAACTCAGGAGTTGGAA----CACAGACGG------GACACCACCGCTCCCCAAATAGCTGCTGGGCAGAGGGA
AAACACAGCGCCTCACCCAAAACCACCCAGAGTGCAGCACTTCACTGCGGCAAGGCACTGAAACTTGATCTGGCAACTAG
ATTTTTACATCTAAGAATGCTGGCAGCCTCGCTAAACCAGAACTGAACCAGCAAGCACCGTAACAGCAGCGTT-CTACTA
CCCTTCTGAATCTGACAGTCACACTGCATGAGCATCTCCCCTAATAAAACCTGAAGGAACCCTATGTATACAAAATAAGA
TCAAGGATGCTGACATGAATTGCTCCACGGCATGGCCGGGTTGCGCTTGCATTGGAACGCTGTTAGAAGCACTGGGGAAC
ACGAAAAATGGAACGTCAGATCAACTGGTCAGTCTGGTGCAGCATCTATGGGTGCACTAGGGAGGTCTGTCAAATGGTAA
GGCCTCGTGCTCGATGGCGGTAGTGAGTGCTTCATCTCTGTCTCAGTCCTGTTCACAAGGAGAATGAACTACATCAGATA
CATAGCTGAGTGCCAGCTGGAGAAACAATCTGCTATAGGAAGAACATGCCGTGGATTTACCAGCTTGATGATTTGATATG
ATATGGATAAATGTTAACCACTGAATCGTCAGAGGAACAACACGAGCTCCCACTGCTTCAACATGATATAGTACTCGTAA
CTCATCCTTTAGCCTTAATGAGCCCATAATGGTAAAAAAACG--TACATGTAAAATTAGCACTATGATAAACCCAGTACA
TACATATAAAAAAACCATACATGCAGCAGTATTTTCATCACTTTTGGCCTATTACTAAGAACATGATAAACCCAGTACAG
AAGCTTAGTGTGAACCCTTTGCTAGACC--AAAAAAAACATGGAATCTAGTTCTGTGTATCACTATATCATCACAGCAGG
AAAGGAAAATTGTTAAATGTTATTTTCTGTTCTGCATGAAACATGTTTACATTCAACACAAACAAATTAGATACGTAAAC
AAAATTGGAGCCCACCTTGTGCATCATGAGTAAGTGCAGCACAACCAAAAACCAGCCACTTGTACTCAAAGACATCCCAA
TCAACACATAACCTC-ATAGTGCAACATGAATCACAAGTTCTGACCAGAAAGCATGGGAAGGAAATGGGACCCAGATATT
TCCTATGTCAGCCCAGCCAAGAATGTTAACCATAATAAACACTTGTGATGGCATAGTCAATAGCTCCAATGCTGCGCTTG
TCAGGTCAGCATATTTCCCTAAGGAAATGGCCAAAATACGATGAATCCACAAACATATATTTTTCCTTTTTGTAGATTAT
TATTGCTGGGTTGCATCACCAATGTAATATCCTATAGCACAAAACTAAGCTGTCAGGTAGCTCAACAACCCAAGCTAATC
AGCAGGAATTCTCTACCAAAGCAGCAGCAAGACTGAACAGTACAAGCTCACGGAAAGTCATGCTGGAATGCACTGCTCTT
TTGACATATATCCTACAAAGTCAATAAGCTCAGGGGAACCTGAATATCCATCTCCAGTTCAG
>chr2B_8
-------CGAGGGGTGGCGGACGAAGGTGCCGACCGGCCAGACGGGGCTATGATTGATGGTCGAAGGTGACGGCAGGTTA
GATACTATACTCGATCAATCAATCTGCGACGGAATGCGTGTCACTCATGGCAA----CCGGCCGGCCGGGGAGTGGTTCG
AAAGCGGTTGGCGACAGGCAAG------TAGTTTCTACCCTGCACATGCACCACCAGAAAACACCCCCCAAAGAGAAGGT
GGTGGTATTCCCAGCCCACCAGGGCCGGCCCAGTTCTGTTGGAAGTGCTCACAGGGTTGGGTGTACGTTTATAGGCGTGA
GTATATGCACGTGTATATGAATGCTTTGCGTCTGTACTATGTTTAAAAAAAACGTAGCCCAAAGACTGCC-------TGG
GCACGGTGGGTGATCCAGCGGCTCAGGAGCTGATCCACGAGCCGGTAAAGGTCCAGAGGAGATGTTTTCAGGTGAGGATG
AGATAGATGCAACCGCCGGGCATTTGTCAGAGATCAGTGCACCGCAGGCACCTCCGG------------TGATGATGAGC
CCACGCTCCGACGGCAAGACACCAACGACAGTTTTCAGCAAAAAGTTTTGGCCAAGCAA-GGATGCATGAGAGCTCTGCT
GGTTCATTATTTTGTAGAGGAAGCAGTAAGCTTCACACAGCGAGTCTGCTAA---------ACCGTCGTCACCGGCCAAC
CGACGAC---TTTGACTTCGACCCAGCAAGTCATCACCGTGCACTGGACGGCCCGACGGTTGCGGCAGCTCCAAGTCAAT
GAACCCATTGCAGACCAGCACCGCCGTCGCCACCACCAGCACGGCGATGATAAGGCACCTCTGGTTCCGGCCTTTCCATT
CGTGCTGAACTCAGGAGTTGAAA----CACAGACGGAGCCGGGACACCACCGCTCCCCAAATAGCTGATGGACAAAGGAA
AAAA--------------------------------------------------------AAACTTAATCTGGCAACTAG
ATTTTTACATCTAAGAGTGCTGGCAGCCTCGCTAAACCAGAACTGAACCAGCAAGCACCGTAACAGCAGCGGTACTACTA
CCCATCTGAATCTGACGGTTACACTGCATGAGCTTTTTCCCC--TAAAGCCTAAAGGAACACTATGTATATAGAATAAGA
TCAAGGATGCTGACATGAATTGCTCCGCGGCATGGCAGGGTTGCGCTTGCATTGGAACGATGTTAGAAGCACCGGGGGGC
ACGAAAAATGAAATGTCAGGTCGACTGGTCAGTCTGGTACGGCATCTATGGGTGCACGAGGGAGGTCTGGAGAATGGGAA
GGCCTCGTGCTCAACGGCGGTAGCAAGTGGTTCGTCTCTGTCTCCATCCTGTTCACAAGGAGAATGAACTAGATCAGATA
CATAGCTGAGTGCCAGCTGGAAAAACAATCTGCTATAGGGAGAACAAGCCGTGGATTTACCAGCTTGATGATTTGATATG
ATATGGATAAATGTTAACCACTGAATCGTCAGAGGAACAACACGAGCTCCCACTGCTTCAACATGATATAGTACTCGTAA
CTCATTCTTTAGCCTTAATGAGCCCATAATGGTAACAAAAACCATACATGTAAAACTAGCACTATGATATTCC-------
---------------------TGCAGCAGTATTTTCATCACTTTTGGCCTATTACTAAGAACATGATAAACCCAGTACAG
GAGCTTAGTGTGAACC-TTTGCTAGACCCAAAAAAAAACATGGAATCTAGTTCTGTGTACCACTATATCATCACAGCAGG
AAAGGAAAATTGTTAAATGTTAATTTCTTTTCAGCATGAAACATGTTTACATTCAACACAAACAAATTAGATACGTAAAC
AAAATTGGAGCCCACCTTGTGCATCATGAGTAAGTGCAGCACAACCAAAAAGCAGCCACTTGTACTCAAAGACATCCCAA
TCAACACATAAACTCAATAGTGCAACATGAATCACAAGTTCTGACCAGAAAGCATGGGAAGGAAATGGGACCCAGATATT
TCCTATGTCAGCCCAGCCAAGAATGTTAACCATAATAAACACTTGTGATGGCATAGTCAATAGCTCCAATGCTGCGCTTG
TCAGGTCAGCATACTTCCCTAAGGAAATGGCCAAAATACGATGAATCCACAAACATATATTTTTCCTTTTTGTAGATTAT
TATTACTGGGTTGCATCACCAATGTAATATCCTATAGCACAAAACTAAGCTGTCAGGTAGCTCAACAACCGAAGCTAATC
AGAAGGAATTCTCTACCAAAGCAGCAGCAAGACTGAACAGTACAAGCTCACGGAAAGTCATGCTGGAATGCACTGCTCTT
TTGACATATATCCTACAAAGTCAATAAGCTCAGGGGAACCTGAATATCCATCTCCAGTTCAG
>SNPs
SSSSSSS--------------S--S-----------------------------------------------S-------
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----S---------------------------------------------------------------------------
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----------------------------------------------------------------------SSSSSSS---
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---S--S----------------------------S--------------------------------------------
---------------------------------S----------------------------------------------
--S-----------------------------------------------------------------------------
------SSSS---S-----------------------------------S----------S----------S-------S
----------------------------S-------------S--------S----------S---------S-------
---S-------------------SSSS-----------------------------------------------------
---------------------------------------S--------------------------------S-------
-------------S------------------------------------------------------------------
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---------S----------------------------------------------------------------------
--SS-------------------------------------S--------------------------------------
-------------------------------------S-----------------S------------------------
-----S--------------------------------------------------------------------------
---------------------------------------------------------------------S----------
----------S---------------------------------------------------------------------
-----------------------------------------------------S--------------S------S----
----------------------------S--------------S------------------------------------
---------------S----------------------------------------------------------------
-------------------------------------------------------S------------------------
-----------------------------------------------------------------S---S----------
------------S------------SS--------------------S--------------------------------
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>forward_770
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------------------------------TCATCACCGTGCACTGAACA------------------------------
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>reverse_1749
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--------------------------------------------------------------------GACCCAGCACAG
GAGCTTAG------------------------------------------------------------------------
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