>input_sequence_86968
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-------------------ATGGCAAATAATAGCACTCTCCAAGTCTTTGTTGTTTTTCTCATTGTGCAAGTCTTATTGC
TCATGATGATTGCAGCACCGATAGCACAGGCAGCTGGCAGGCTTATGGGATACAACCCAGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGGCTCGGTGGCGTGATGGCCAATGGGACCGCATCCTCCATGAAGCCTTGA--------------------
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>chr1B_1_TraesCS1B01G461500
TAGGCCCGGGACGGAGGGGTGTGACAGGCTGGCGGATCGGCTGTGCACGTCCACGTATAGCTCATACATGCCACACATGA
AGGTGGGTATACCTTATGGTCAAATGAC-ATAGTTCTCTTATACGGTTTGTGAGGGAGGTGTACCGAAGCAAGGCTCTAT
GAATATAGCATGAAACAAAAACAAATTATAGATACGTTTAAGACGTATCAGAATTTTGATGCTAGGATCAAATTCCAAAG
TTACAAGATAGCACCTACTTGGCTAATTTTTAAAGAGTACATAAAGCATAATATGTAGTGATGTACTTTGAACCAGACAA
TCATGTGAGGAATTGTCTAGTGATTGATAAGAGAAAGTAATTAGAGGATCAACCTTGAGCGTAGAGTTACCCCCTCCCCG
C-GTATCGTGTACCAAATCTGAATATGATATACATATCTTTACCATATATTTATGTATTAACTGTAGATCTAAGTGCATA
TCTCCATGGCCTGCCAAGATCCAAGAGTTATATCGTGATATATAT----CTATTACGAAACGTATATCTACAAGATATGT
TGACTATTGGTGAATTTATCATGTATATAGTATGCATATCCAGGAAGCATGTATTACTAGTATGTAGCTTTATCTGGTCT
TAATTTCATTTTTATACATTTATTATTTTCTCTCCTAAAATAATCCCTAAAA-AAGAGATTTTGCTTGGTTAATTCATCC
CATTATTATCATATCTTGTAGAATCATTTTTATAGCATAATTAGTGGT-AAAAAAATGCAGTCAACGTGTCTAGGTTCAT
TGTCCCATTAACTTTCATATATTTTTAGGAGGCATTTACTATTCGCCAAATATATTAAATTTC-----------------
--------------------------CTATTTTAATATAATTTATTAGGATAAATACAAGCTTCATGTCATGG-TATCTA
TATAAAGTGA-------GTATTTGCTTGGACCTAACACAAACATACAACTGAACGTAGTATTGCATAGTGCATTCTACTG
CTCTATGTGAATTTAGGTGATGGCAAATAATAGCACTCTCCAAGTCTTTGTTGTTTTTCTCATTGTGCAAGTCTTATTGC
TCATGATGATTGCAGCACCGATAGCACAGGCAGCTGGCAGGCTTATGGGATACAACCCAGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGGCTCGGTGGCGTGATGGCCAATGGGACCGCATCCTCCATGAAGCCTTGATATGTGGTTC-TTTTCTCCT
CCGATAAATAAGCTAGGACATATAAAATATGCTCTCGCGTGTGGTTTGTTGTTCCACATATATATTTTTTGTTGCTAT--
--TTTCAAAAAATGTTATTATATAAGCTATTTTTATAATAAA-GTGGGAGGAGATTATTACCTATGTTGTTTGCAATGTG
CCGCAAAGAGATTAAAA-TTGTGTCAAATTCAATGT--TTTTAGAGGATTATATCATCCTATAT-TTTCATGGTTAACTA
CATGTTATAGTCATAAATGGACTATTTGTTGTTGATTCCAATGTATTGCTAAACATATTAGTTAACCCATCAAATAAAGT
ATCAGTTTGTTGCAGAAATGGATCAAATACCATATAATTCATTACTGTCATTCCATTGTAGCATAATTGATGCAAAACCA
TTGAGATAATGTTATTCACCCAAGGGGGTTCTTTTGGCAGTGCGACGCTGATGTATGTGATGGTCCATGCCAAAGACTCC
TCCACAAGAGTCCTTCAATTTTACAACATGTTGTGATCCTTGCTAATGAAATTCTTACTCAACCGAGCTTGTAAAATAAA
AGAGAACTAATTGTCCAAAAAAGAGAAATCAAGAGGTAAAACTAACAACTTAACCTTTTTTACGGTTTCTCTTTTTTTGG
TAATTTCCAAAATGTAATTTTCACCTTTTTTTCCCCTTTTTCCTACCCATTATTACTTTGTCTCATTTTTGGTGTTCCTC
TCAATACCTTAACAGCCCGCTCATGCTTGTCCGACCGATTCAATTTAGACAAGGCATCATGGACACTTTTTGTGTGGACA
TTATGATAAAGTAAGTGTCATGTCATGCAAGACAAGTGTGGTTTGGATAGAGTCAAAGGAAAACAATTATATAAGTTTGT
TTAAAGACGTGGTCATACAAAAAAATCTACGATATTTTCAATTATATT--AAAAATATGTATATGATTTTACAATTACAA
AAAATAAATAGACAGGCTATCCAGTTCCAGTT
>chr1D_2
-AGGCCCGGGATGGAGGGGTGTGACGGGCTGGCGGATCGGCTGTGCATGTCTACGTTTAGCTTGTACATGCCACATATGG
AGGTGGGTATACCTTATGGTCAAATGATAATAGTTCTCTTATACGGTTTGTGAGGGAGGTGTACCGAAGCAAGGCTCTAT
AAATATAGCATGAAACAATAACAAATTATAGAAACATTTGAGACGTATCAGAAATTTGATGCTAGGATCAAATTCCAAAG
TTACAAGATAGCACCTACTTGGCTAATTTTTAAAGAGTACATAAAGCATAATATGCAGTGATGTACTTTGAACCAGACAA
TCATGTGAGGAATTGTCTAGTGATTGATAAGAGAAAGTAATTAGAGGATCAACCTTGAGCGTAGAGTTACCCCCTCCCCA
C-GTATTGTGTACTAAATCTGAATACGATATACATATCTTTACCATATATTTATGTATTAACTGTAGATCTCAATGCATA
TCTCCATGGCCTGCCAAGATCCAAAAGTTATATCGTGCTATATAT----CTATTACGAAACGTATATCCACAAGATATGT
TGACTATTTGTGAATTTATCATGTATATAGTATGTATATCCAGGAGGCATGTATTACTAGTATGTAGCTTTATCTGGTCT
TAATTTCATTTTTATACATTTATTATTTTCTCTCCTAAAATAATCCCTAAAATAAGAGATTTTGCTTGGTTAATTCAGCC
CATTATTATCATATCTTGTAGAATCATTTTTATAGCATATTTAGTGGTCC-AAAAATGCAGTCAACATGTCTAGGTTCAT
TGTCCCATTAACTTTCATATATTTTTAGGAGGCATTTACTATTTGCTAAATATATTAACTTTCCTATTCTCTTTACTACC
AATTAAATCCTCAATATTCGTATAGTCTGTTTTAATATAATTTATTAGGATAAGCACAAGCTTCATGTCATGG-TATCTA
TATAAAGGGA-------GTATTTGCTTGGACCAAACACAAACATACAACTGAACGCAGTATTGCATGGTGCATTCTACCG
CTCTTTGTGAATTTAGGCGATGGCAAATAATAGCATTCTCCAAGTCTTTGTTGTTTTTCTCATTGCGCAAGTCTTCTTGC
TCATGATGATTGCAGCACCGATAGCACAGGCAGCTGGCAGGCTTATGGGATACAACCCAGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGGCTCGGTGGCGTGATGGCCAATGGAACCGCATCCTCCATGAAGCCTTGATATGTGGTTT-TTTTCTCCT
TCGATAAATAAGCTAGGAAATATAAAATAGGCTCTCGCATGTGGTTTGTTGTTCCACATATATATTTTGTGTTGCTAGCT
AGTTTCAAGAAATGTTATTACATAAGCTATTTTCCTAATAAA-GTGGGAGGAGGTTATTACCTATGTTGTTTGCAATGTG
CCGCAAAATGATTAAAA-TTATGTCGAATTCAATGT--TTTTAGAGGATCATATCATCCTATAT-TTTTGTGGTTAAATA
CATGTTATGGTCATAAATGGACTATTTGTTGTTGATTCCAAAGTATTGCTAAACATATCAGGTAACCCATCAAATAAAGT
ATCAGTTTGTTGCATAAATGGATCAAATACCATATAATTAATTATTGTCATTACATTATAGCATAATTGATGCAAAACCA
TGGAGATAATGTTATTCACACAAGGGGGTTCTTTTGGCAGCGCGACGCTGATGTATGTGATGGTCCATGCCAAAGACTCC
TCCACAGGAGTCCTTCAATTTTACTCCATGTTGTGACCCTTGCTAATGAAATTATTACTCAACCGAGCTTGTAAAATAAA
AGAGAACTAATTGTCCAGAAAAGATAAATCAAGAGGTAAAACTAATTGCTTAACCTTTTTTTTAGGTTTCTCTTTTTTGG
TAATTTTCAAAATGTAATTTTCACCTTTTTTCT---TTTTTCCTACCCATTATTACTTTGTCTCATTTTTGGTGTTCCTC
TCAATGCCTTAACAGCCCGCTCATGCTTGTCCGACCGATCCGATTTAGACAAGGCATAGTGGACACTTTTTGTGTGGGCA
TTATGATAAAATAAGTTTCATGTCATGCAAGACAAGTGTGGTTTGGATAGAATCAAAGGAAAATAGTTATGTAAGTTTAT
TTAAAGATGTGATCATACAAAAAAATCTACGATATTTTCAATTATATTTAAAAAATATCTATATAATATTACAATTACAA
AAAATAAATAGACAGGCTATCCAATTCAAGTT
>chr1A_2
-AGGCCCGAGACGGAGGGGTGTGACGGGCAGGCGAATTGGCTGTGCACGTCTACGTATAGCTCGTATATGCCACATATGG
AGGTGGGTATACCTTACGGTCAAATGACAATAGTTCACTTATACGGTTTGTGCGGGGGGTGCACCGAAGCAAGGCTCTAT
AAACATAGCATGAAACAATAACAAATTATAGATACATTTGAGACGCATCAGAATTTTGATGCTAGGATCAAATTCCAAAG
TTACAAGATAGCACCTACTTGGCTAATTTTTAAAGAGTA-------CATAATATGTAGTGATGTACTTTGAACCAGACAA
TCATGCGAGGAATTGTCTCGTGATTGATAAGAGAAAGTAATTAGAGGATCAACCTTGAGCATAGAGTTACCCCCCTCCCC
ATGTATTGTGTACTAAATCTAAATACAATATACATATCTTTACTATATATTTATGTATTAACTGTAGATCTCAATGCATA
TCTCCATGGCCTGACAAGATCCAAAAGTTATATCGTGCTATATATCTAGCTATTACGAAATGTATATCTACAAGATACAT
TGACTATTGGTGAATTTATCATGTATATAGTATGTATATCCAGGAGGCATGTATTACTAGTATGTAGCTTTATCTGGTCT
TAATTACATTTTTATACATTTATTATTTTCTCTCCTAAACTAATCCCTAAAATAAGAGATTTTGCTTGGTTAATTCACCC
CATTATTATCATATCTTATAGAATCATTTTTATAGCATATTTAGTGGTAAAAAAAATGCAGTCAACATGTCTAGGTTCAT
TGTGTCATTAACTTTCATATATTTTTAGGAGGCATTTACTATTCGCTAAATAGATTAACTTTCCTATTCTCTTTACTACC
AATTAGATCCTCAATATTCGTATATTTTGTTTTAATATAATTTATTAGGATAAGCACAAGCTTCATGCCAT-GATATCTA
TATAAAGCGA-------GTATTTGCTTGGACCAAACACAAACATACAACTGAACGCAGTATTGCATAGTGCTCTCTACTG
CTCTTTGTGAATTTAGGCGATGGCAAATAATAGCATTCTCCAAGTCTTTGTTGTTTTTCTCATTGCGCAAGTCTGCTTGC
TCATGATGATTGCAGCACCGGTAGCACAGGCAGCCGGCAGGCTTATGGGATACAACCCAGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGGCTCGGTGGCGTGATGGCCAATGGAACCGCATCCTCCATGAAGCCTTGATATGTGGTTT-TTT-CTCCT
CCGATAAATAAGCTAGGACATATAAAATATGCTCCCATGTGTGGTTTGTTGTTCCACATATATATTTTGTGTTGCTAG--
--TTTCCAGAAATGTTATTATATAAGCTATTTTTCTAATAAA-GTGGGAGGAGATTATTACTTATGTTGTTTGCAATGTG
CCACAAAGAGATTACAA-TTATGTCGAAATCAATGT--TTTTAGAGGACCATATCATCCTATAT-TTTTATGGTTAAATC
CATGTTATTGTCATAATTGCACTATTTGTTGTTGATTCCAATGTATTGCTAAACATATCAGTTAACCCATCAAATAAAGT
ATTAGTTTGTTGCAGAAATGGGTCAAATACCATATAATTCATTATTGTCACTACATTGTAGCATAATTGATGCAAAACCA
TGGAGATAATGTTATTCACACAAGGGGTTTTTTTTGGCAGTGCGACACTGATGTATGTGATGGTCGATGCCAAAGACTCC
TCCATATGAGTCCTTCAATTTTACTCCATGTTGTGACCCTTGCTAATGAAATTCATACTCAACCGAGCTTGTAAAATAAA
CGAGAACTAATTGTCCATAAAAGAGAGATCAAGAGGTAAAGCTAATAGCTTAAAATTTTATGGTTTA-TCTTTTTTTTGG
TAATTTCC-AAATGTAATTTTCACCTTTTTTC----------CTACCCATTATTACTTTATCTCATTTTTGGTATTCCTC
TCTATGCCTTAACAACCCGCTCATGCTTGTCCGACCGATCAGATTTAGACAAGGCATAGTGGA-ACTTTTTGTGTGGGCA
TTATGATAAAATAAGTGTCATGTCATCAAG--------------------------------------------------
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>chr1B_844
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-------------ATATTCAGATATTCTGTTTTAATGGTATTTGTTAGGATAAGCACGGGCTCCATGCCAT-G-TATCTA
TATAAATCGA-------GTATTTGCTAGGACCAAACACA----TACCAGTGAGAAGAGTATTGCGTAGTGTTTTCTATTG
CTCTCTGTGAACTTAGGCGATGGCAAATAATAGCATCCTCCAGGTCTTCGTTGTTTTTCTCATTGCACAAGTATGCTTAC
TGATGATGATGGCAGCACCAGTAGCGCAGGCAGCTGGCAGGCTTATGGGATACAATCCCGTTTGCTGCCCTAGGGACATC
TACTGTTGTGGGTTTGGTGGTGTGATGGCCAATGGAACTGCATCCTCCACCAATCCTTGATATGTCGTCTCACT-CTCCT
CCGAGCTATAAGCTAGGGCATATAAAATGTGCTTCAAGTTGGT-CGTTTCGTTTCTTATATGCAATTTGTGCTACTAG--
--TTTCAAGAAATATTATGTG-TAAGCTATTTTGCTAATAAAAGTGGGAGGAGATTGTTATCTATGTTGTTTGCAATGTG
CCGCAAAGAGATTTAAAATTATGTTTACT---GTGT--TTTTTGAGGATCATATCACCCTATAT-TTTCATGGTTAAACA
CATGTTATGATAATAAAGGTACCATCCTTAGTTGATTCCAGTTTATTACTAATCATACCAGTTAACCCATCACATAGAGT
GTCAATTTTCTGCAGA----------------------------------------------------------------
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>chr1A_844
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-------------ATATTCAGATATTCTGTTTTAATGGAATTTATTAGGATAAGCACGGGCTTCATGCCAT-G-TATGTA
TATAAATCGA-------GTATTTGGTAGGACCAAACACAAACATACCAGTTACAAAAGTATTGCATAGTGCTTTATATTG
CTCTTTGTGAACTTAGGCGATGGCAAATAATAGCATCCTTCAGGTCTTCGTTGTTTTTCTCATCGCGCAAGTTTGCTTAC
TGATGATGATGGCAGCACCGGTAGCGCAGGCAGCCGGCAGGCTTATGGGATACAATCCTGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGGTTCGGCGGCATGATTTCCAATGGAACTGCATCCTCCACCACTCCTTGATATGTTGTCTCACT-CTCCT
CCGAGCTATAAGCTAGGGCCAATAAAATGTGCTTCAAATTGGT-TGTTTTGTTTCTTATATGCAATTTGTGCGACTAG--
--TTTCCAGAAATATTATGTG-TAAGCTATTTTGCTAATAAAAGTGGGAGGAGATTGTTATCTATGTTGTTTGCAATGTG
CCGTAAAGATATTTGGAATTATGTTTACTTTAGTGT--TTTTTGAGGATCATATCATCCTATAT-TTTCATGGTTAAACT
CATGTTACGAAAATAAAGGTACGATCCGTAGTTGATTCCAGTTTATTACTAACAATAGCAGTTAATCCATCACATAGAGT
GTCAATTTGTTGCAGA----------------------------------------------------------------
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>chr1A_844
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-------------ATATTCAGATATTCTATTTTAATGGAATTTATTAGGATAAGCACGGGCTTCGTGCCAT-G-TATGTA
TATAAATCGA-------GTATTTTCTAGCGCCAAACACAAACATACCAGTGACAAGAGTATTGCATAGTGCTTTCTATTG
CTCTGTGTGAACTTAGGCGATGGAAAATAATAGCATCCTCCAGGTATTCGTTGTTTTTCTCATCGCGCAAGTTTGCTTAC
TGATGATGATGGCAGCACCGGTAGCGTAGGCAGCCGGCAGGCTCATGGGGTACAATCCCGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGGTTCGGCGGAGTGATTTCCAATGGAACTGCATCCTCCACCACTCCTTGATATGTTGTCTCACT-CTCCT
CCGAGCTATAAGCTAGGGCCAATAAAATGTGCTTCAAATTGGT-CGTTTTGTTTCTTATATGCAATTTGTGCGACTAG--
--TTTCCAGAAATATTATGTG-TAAGCTATTTTGCTAATAAAAGTGGGAGGAGATTGTTATCTATGTTGTTTGCAATGTG
CCGCAAAGATATT-------------------------------------------------------------------
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>chr1A_859
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-----------------------------TTTTAATGGAATTTATTAGGATAAGCACGG-CTTCATGCCAT-G-TATCCA
TATAAATCGA-------GTATTTGCTAGGATCAAACACAAACATA----TGAACAGAGCATTGCATAGTGTTTTCTACTA
CTCTATGTGATCTTAGGCGATGGCAAATAATAGCATCCTCCAAGTATTCACAGTTTTTCTCATTGCGCAAGTTTGCTTAC
TTATGGTGATTGCAGCACCGGTAGCGCAGGCAGCTGGCAGGCTTATGCGACCCAATCCAATTTGCTGCCCTAAGGAAATC
TTTTGTTGTGCATTCGGTGGCATGATGTCCAATGGAACTGTATCCTCCACCAATCCTTGATGTGTTGTTTCATT-CTCCT
CCGAGCTAGAAGCTAGGGCCTATAAAATATGCTTCAACATGGC-CGTGTTGTTTCTTATATGTAATTTGTGTTACTAG--
--TTTCAAGAAATATTATGTG-TAAGCTATTTTGCTAATAAAAGTGGGAGGAGATTGTTATCTATGTTGTTTGCAATGTG
CCGCAAAGAGATTTGAAATTATGTTTAATATAGTGT--TTTGAGAGGGTCATATCATCCTATAT-TTTCATGGTTAAACA
CATGTTACGATAATAAAGGTACCATCAGTAGTTGATTCCAGTTTATGACTAAACATA-----------------------
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>chr5A_861
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-------------------------------TTAATTGAATTTATTTGGATAAGCACGAGCTTCATACCATTG-TGTATA
TATAAAGGAATTATGTGGTATTTGTTAAGACCAAACATAAACATACCGGTGAAAAGAGTAGTGGAGATTGTTCCCTATTG
CTCCGTGT--ACTTAGGCAATGGCGAATGATAGCATCCTTCATGTCTTCATTGTTTTTCTCATCGCTCAAGTCTGCCTGC
TCATGATGATGATAGCGCCGGTGACACATGCAGCTGGTAGGCTTATGGGCTATAATCCAGTTTGCTGCCCTAGGGACATC
TATTGTTGTGGATTTGGTGGCGTGATGGCTAATGGAACCTCATCCTCCATTGAGCCTTAATATGTAATTTCTTT-CTCCT
TTGAGTAATAAGCTAGGGAAAATAAAAGATGTTTCTACATCGC-CTTGTTGCTTC--AATTGCAATACGTGCCACTAC--
--TTTCAATAAATGTTGTTGGACAAGCTATTTAGTTAAAGAG-GTGGGAGGAGATTGTTATCTATCTTTTTTGCAATATG
CAGTTGATA-AATTGAAATCATTTTTAGT---TTAATGTTTTTGAGGTACTGATCATCCTATATCTTTTATGCTTAAACA
CATTTTTGATCAT--AATGGACCATATGTAGCTGATTTCAACGTATTTCGACACATAC-AGTTAATCCA-----------
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>SNPs
S------------------------S-------------------------S-----------S-----------S---S
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S-----------------S----------------S---S----------------------------------------
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-------------------------------------------------------------------------------S
------S------S-----------S---------------------------------------------S-S------
------------------------S------------S------------------------------------------
----------------------------------S----------S----------------------------------
-----------------------------------------------------------------------------S--
---------------------------------------S--------------------------S-------------
----------------------------------------------S-----------S---------------------
-----------------------------------------------------SS-------------------------
-------S------------------------S----------------------S------------------------
-----------------S-----------------S-----------------------------S---------S----
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-----------------------------------S---------------------------------S----------
--------------------------------------------------------------------S--------S--
--------S-------------------------S---------------------------------------------
--------------------S----S-----------------------S---------------------------S--
----------------------------------------------------------S---------------------
--------------------------------------------S-------S---------------------------
-S-----------------S------------------------------------------------------------
------S-----------------SS----------S-------------------------------------------
-----------------S---------------------------S-S-------------SSS----SSS---------
-------------------------------SSSSS--------------------------------------------
-----S---------------------------------S-S---------------SS------------------S--
----------S----------------------------------------S-----------S-S----S-------S-
-------S---S----------------------------------------------S-----S--S------------
-----------------------S---S----
>forward_400
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------------------------------------------------------------GTAGAGTTACCCCCTCCCCG
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>reverse_2006
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-----ACCTTAACAGCCCGCTCATG-------------------------------------------------------
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