>input_sequence_86948
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----------------------------------------------------------------ATGGCGAACCGCGCCT
CAACCACCGATGACCTCCGCGTGAAGATTTCCGGCGATGAGATCCGGCGTTTGCTTCTTCTGC-GGGTAGGAGGCGGAGG
ATCCAGCGGTGACACCCACGCTAGGGATGCAGAGGACATGCATGACGCGCGATGCAAGATGGTGGTCATGGGTGGTGATG
CGCATGTGTGCCACTCCATCCATGGCTGA---------------------------------------------------
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>chr5A_1_TraesCS5A01G098500
AACGGCCTGCAGTGATGGCGTGGAACGGCCATGGTGGCAGTGGGGAAGGAGGGCCTCGCCGGTGAGCAGGCCGGTGGCGC
GGTGGCGCTTGGCCAGGCGTAGTATGGGGTGGGCGTCGGTTAGGAGGCGTGGG-CGGTGCATG-----------------
-------GTTCGGAGGTGGGGGCGGTGCGGCGCCGGAAGATGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------
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----------------------------------CGGGGCGACACTGGGAAGAAGGTGGGGTGCGGGGCAGCGCCAGGAA
GAAGG-------------------------TG-GGGGCGGGGCGG-CGCCGGGATCCAGCCGGGGAGAAGGTGGGAGCGG
GGCATCACCAGGGTCCAGACAGGGGAGAAGGT-GG-GGCTGGCCATCACTGGGATCCAGCCGGAGACGGGGATGCAGGAG
TGGGTGGGCTAGATTTTCCTTTTTTT-CCTTCAC---GCCCTTTATAGGTCGAGGGGTAACAGAATATTATTCTGTTACC
CTCGACCCTATATAGACACGAGCGTGACACAACTACAGCTTCTCGATCCAACCCACCAGCTCGAACCATCCCGATAGAAA
AGGAAAAGAAAAATCCATCCCGCACAACCCACTAA-CCCCCTCCCCCCAAACCACCTACTTTCTCGATCCCATCTCGTTG
T-------------------------------------------------------------------------------
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-------------------------------------------CGCCCCATGCCCCGCCTCCGTGCGGCACCACCCTTCG
CCCCACTGCCGCGCGCCACCACCCCTTGCGCCGC----------------------------GGCTGCGCGCCACCACCC
CTCGCCCCACCGCCGAGAGCCACCATCCCTCGCCCCGTCGCCGCACGCCGGTAATCCCCGCCCCATGGCGAACCGCGCCT
CAACCACCGATGACCTCCGCGTGAAGATTTCCGGCGATGAGATCCGGCGTTTGCTTCTTCTGC-GGGTAGGAGGCGGAGG
ATCCAGCGGTGACACCCACGCTAGGGATGCAGAGGACATGCATGACGCGCGATGCAAGATGGTGGTCATGGGTGGTGATG
CGCATGTGTGCCACTCCATCCATGGCTGACCGCCGCTCGAAGCTGCCCCTGCATGCCGTCGACTCATCCACCCACTGCCC
ACTACTTCCTCCCATGTGGCCTTCTTCCTCTGTCCACTACTGGCTCGTCGGCAGTTCTTCTTCACCTACACCT----GTC
TGTGTTTCGGCATCTCATCCCCACATCTT-CGTATAATTGATGCTTGCTTGACAGTTCATAGACAAGAATTTGAGCGGTG
GTCTCTAGCAGTTGCGGATCCAGAAATTCAACTTTGGGCATTCAAATTTTTTTCTCACCCTAACAGAGAATCCAACTGGG
TTCACGCAATACAAATTGTTCACAATAGCAATAATATCTTACTAGAAGATTAACGAAATTGTTCACTCTACTCCATAAAG
TTTTCAAATCAATGTCCTTCCTCCTAAGTTTTGAATGTTATACTGCCTACAATTCAAAGACAATTTATTTGTTATTTTTA
TGCTAATTAAATCAACCAGATCCTCACTCATGTGACATCTGTAGATCTATATCTCTCT--ATCCGAAAATAAGCAACACA
CTTAGTTGCGGAATTCACAACACAT-------------------------------------------------------
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-----TCAGTGAACATTGCAATTTCAAAATTGGAAAGGGATTTGCCTTATGCTTAGAGATTGAGGTTGTTGGCTACACTG
GTATGGCATGGACGACTGCAGCCGCGCCGT---------TCGTCCGGTTGTCCCCACCTTCGGTGCATCGCAATCCCTAT
TGGTGGCAGTGGGCGCGGCACCGTGCAGCTTGCCTTTGTCCTCCGTAGTGGTGAAAACCATGGGAGGCTCCATCCCGTTC
GGCGTCGGTGGCTTGGTCAAGCTCTCCCTCGCCATACTCGCCATGGGCACACAGCAAGCCAGCAACGTGTCGCCACCTAG
TCCATGGGCAGATGAAATTGATGGCTGGCTGCATGCGTGAAGACAGCTCACTGTTGCTTCTGAAATGGGCTACTAATGGG
CCTATACATTGTAGATTATTGTCTCTGTGATACATATATACGATTTTTTTCAGAAAATTTTGGGT
>chr5A_1
AACGGCCTGCAGTGATGGCGTCGAACGGCCATGGCGGCAGTGGGGAAGGAGGGCCTCGCCGGTGAGCAGGTCGGTGGCGC
GGTGCCGCTTGGTCAGACGGAGTATGGGACGGGCGTCGGTTAGGAGGCGTGGGGCGGTGCGTG-----------------
-------GCCAGGAGGTGGGGGCGGCGCGTCGCCGGAAGGTGGGGC----------------------------------
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------------------------------------------------------CGGCGCCGGGAAGAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGCGGCGCCAGGAAGAAGGTGGGGTGCGGGGCGGCACCAGGAA
GAAGG-------------------------TGTGGGGCGGGGCGG-CGCCGGGATCCAACCGGGGAGAAGGTGGGAGCGG
GGCATCACCGGGGTCCAGACAGGGGAGAAGGT-GGGGGTTGGCCATCGCCGGGATCCAGCCGGAGACGGGGATGTGGGAG
TGGGTGGGCTGGATTTTCCTGGTTTTTTTTTCTTCGGGCCCCTTATAAGCCGTGGAGTAACAGAATAATATTCTATTAC-
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>chr4D_1
AACGGCCTGCAGTGATGCCGTCGAACGGCCATGGCGGCAGTGGGGGAGGAGGGCCTCGCTGGTGAGCAGGCCGGTGGCGC
GGTGGCGCTTGGCCAGGCGGAGTATGGGGCGGGCGTCGGTTAGGAGGCGTGGGGCAGTGCGTGACTGGGAGGTGGCGGCG
GTGCGGCGCCCGAAGGTGGGGGCGGCGCGTTGCCAGAAGGTGGGGC----------------------------------
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------------------------------------------------------TGGCGCCGGGAAGAAGGTGGGAGG--
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----------------------------------CGCGGCGGCGCCGGGAAGAAGGTGCGAGGCGGGGCGGCGCCGTGAA
GAAGGTGGGGGCGGGGCGGCGCGAAGAAGATG-GGGGCGGGGCGG-CGCCGGGATCCAGCCGGGGAGAAGGTGGGAGCGG
GGCATCACCGGGGTCCACACAGGGGAGAAGGCGGGGGGCTGGCCATCGCCGGGATCCAGCCAGAGACAGGGATGCGGGAG
TGGGTGGGCTGGGTTTTCTTTTTTTT-CCTTCAC---GCCCCTTATAGGCCGAGGGGTAACAGAATAATATTCTGTTAC-
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>chr1B_1
AACGGCCTACAGTGATGGCGTCGAACGGCCATGGTGGCAGTAGGGTAGGAGGGCCTCGCCGGTGAGCAGGCCGGTGGCGT
GGTGGTGCTTGG-CAGGCGGAGTATGGG-CGGTCGTCGGTTAGGGGGCGTGGGGCGGTGCATG-----------------
-------GCCGGGAGGTGGGGGTGGTGTGTTGCCAGGAGGTGGGGCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCACCGTGAAGAAGGTGG--GG--
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----------------------------------CGGGGCGGCGCTGGGAAGAAGGTGAGGTGCGGGGTGGCGCCAGGAA
GAAGG-------------------------TG-GGGT-GGGGCGGCCGCCGGGATCCAGCCGGGGAGAAGGTGGGAGCGA
GGCATCACCGGGGTCCAGATAGGGGAGAAGGCGGGGGGCTGGCCATCGCCGGGATCTAGCCGGAGACGAGA------GAG
TGGGTGGGCTGGGTTTTCTTTTTTTTTCCTTCAC---GCCCCTTATAGGCCGAGGGGTAACAGAATAATATTCTGTTAC-
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>chr5B_713
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-------------------------GACACAGCTACAGTTCCCGAATCCAGCCCACCAGCTCGAACCGGCCCGATAGAAA
AGGAAAAGAAAAATCCATCCCGCACAACCCACTAACCCCCCTCCCCCCAAACCACCTACTTTCCCGATCCCATCTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCGAATCCAGCCCACCAGCTCGAACCGGCCCGATAGAAAAGGAAAAGAAAAATCCATCCCGCACAACCCACTAACCC
CCCTCCCCCCAAACCACCTACTTTCCCGATACCATCTCGCCGCCGCCCCATGCCCCTCCGCCGTGCGCCACCACCCCTCG
CCCCACCGCCGCGCGCCACCACCCCTTGCGCCGCCGCCGCGCGCCACCATCCCTCGCCTCGCGGCCGCGCGCCACCACTC
CTCGGCCCCCTGCCGGGAGCCACCATCCCTCGCCCCGTCGCCGCACGCCGGTAGCCCCCGCCCCATGGCGAACCGCGCCT
CAACCACCGACGACCTCCGCGTGAAGATTTCCTCGGC-GAGATCCGACGTATGCTTCTTCTGCGGGGTAGGAGGCGGAGG
ACACAGCGGTGACTCCCACGCTAGGGATGCAGAGGACACGCACGACGCGCGACGCAAGATGGTGGTCATGGGTGGTGATG
CGCCTGTGCGCCGCCCCATCCACGGCTGACCGCCGCTCGAAGCTGCCCCTGCACGCCGCCGACTCATCCAGGCACTGGCC
CCTGCTTCCTCCCATGTGGCCTTCTTCCTCTGTCCACTACTGCCTCGTCGGCAGTTCTTCGTCGCCAACACCCGAAGGTC
TGTGTTTCGTCATCTCATCCCCACATCTCCCATATAATTGGTGCTCGCTTGACAGTTCATAGACAAAAATTTGAGCGGTG
GTCTCTAG------------------------------------------------------------------------
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>chr5D_713
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-------------------------GACACAGCTACAGTTCCCGAATCCAGCCCACCAGCTCGAACCGGCCCGATAGAAA
AGGAAAAGAAAAATCCATCCCGCACAACCCACTAACCCCCCTCCCCCCAAACCACCTACTTTCCCGATCCCATCTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNN-----------------------------------------------------------
---------------------------GATCCCATCTCGCCGCCGCCCCATGCCCCGCCGCCGTGCGCCACCACCCCTCG
CCCCACCGCCGCGCGCCACCACCCCTTGCGCCGCCGCCGCGCGCCACCATCCCTCGCCCCGCGGCCGCGCGCCACCACTC
CTCGGCCCCCCGCCGGGAGCCACCATCCCTCGCCCCGTCGCCGCACGCCGGTAGCCCCCGCCCCATGGCGAACCGCGCCT
CAACCACCGACGACCTCCGCGTGAAGATTTCCTCGGC-GAGATCCGACGTATGCTTCTTCTGCGGGGTAGGAGGCGGAGG
ACGCAGCGGTGACTCCCACGCTAGGGATGCAGAGGACACGCACGGCGCGCGACGCAAGATGGTGGTCATGGGTGGTGATG
CGCCTGTGCGCCGCCCCATCCACGGCTGACCGCCGCTCGAAGCTGCCCCTGCACGCCGCCGACTCATCCAGGCACTGCCC
CCTGCTTCCTCCCATGTGGCCTTCTTCCTCTGTCCACTACTGGCTCGTCGGCAGTTCTTCTTCGCCAACACCCGAAGGTC
TGTGTTTCGTCATCTCATCCCCACATCTCCCGTATAATTGATGCTCTCTTGACAGTTCATAGACAAAAATTTGAGCGGTG
GTCTCTAG------------------------------------------------------------------------
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>chr5B_1418
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-------GCAGTGGTGGATCCAGAAATTCAACTTTGGATGTTC-AATTTGTTTTTCACCCTAACAGAGAAGCCAACTGGG
TTCACACAATACAAATTGTTCACAATAGCAATAATATATTAC---AAGATTAATGAAATTGTTCACTGTACTCCATAAAG
TTTTCAAATCAATGTTCTTCCTCTTAAGTTTTGAATG------TGCCTACAATTCAAAGACAATTCATTTGTTATTTTTC
TGCTATTTAAATCAACCAGATCCTCACTCATGTGACACCTATAGATCTATATCTCTCTGAATCCGAATATAAGCAACACA
CTTAGTTAGGGATTTCACAACACATTCAGGCCCAGTTCTTTTGCCAGAATCTGGGGATTCTCCCAGAATCCGACCCCTAC
CCAGCTTCTCCTAGAATCTTTTAGCCCCATTTGTTTTACAATCCTATCTAATTAGACTCTAACTAGATAGGATTGTAAAA
CACATGGGGCTCAAAGATTCTGGGAGAAGCTGGGTAGGGGTCGGATTCTGGGAGAATCCCCAGATTCTGGCAAAAGAACT
GGGCCTCAGTGAACATTGCAATTTCAGTATTGGAAAAGGATTTACCTTAGGCTCAGAGATTGAGGTTGTT-GCTGCACTG
GTATGGCATTGACGACCGCAGCGGCCGCCGCCGCGCCGCTCGTCCGGTCGTCCCCACCTTCGGTGCATCGCAATCCCCGT
TGGCGGCAGCGGGCGCGGCACTGCGCAGCTTGCCTGTGTCCTCCGCAGCGGCGAAAACCATGGGATGGTCCATCCCGTCC
GGCGCCGGTGGCTTGGTCGAGCTCTCCCTCGCCAGACTCTCCGTGGGCA-------------------------------
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>SNPs
---------------------S----------------------------------------------------------
-------------------S---------S--------------------------------------------------
--------SS-------------------S---------S-----SSSSSS-----------------------------
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-----------------------------------------S-S-------------------------S----------
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---------S-------------------------------------S-S-------------------------S----
----------S------------------------------S-------S-----------------S-----------S
SSSSSSSSSSSSSSSSSSSSSSSSS------S------S-S-SSS-----S----------------SS-----------
---------------------------------------------------------------S-----------SSSSS
S-------------------------------------------------------------------------------
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-----------------------------------------------------------S-------S--------S---
------S----------------------------------------------------------S------------S-
----S---S------S-------------------------------------SS-------------------------
----------S---------------------SSS-SS--------S---S-----------------------------
-SS----------S------------------------S---S---------S---------------------------
---S----S---S-S-------S------------------------------S----S-----------SS--------
S--S-----------------------------------------------------------S--S-----S-------
---------S------------------S----------------S--------------------S-------------
------------S-S----------------------SSS---S-----S---S----------------S---------
-----S-------------------------------S----SSS--------S-------------S------------
---------------S-------S-------------SSSSSS----------------------S-------------S
-----S-------------------------------S--S--------------------------S------------
-------SS---S-------------------------------------------------------------------
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--------------------------SS--------S------S-----S---S----------------S---S-----
---------S------S-----S--SS-SS------------------S----------------------------SS-
---S-----S-----------S-S-----------S---------S--S--S-------------S-S----------S-
----S-------------S---------------S----S--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1159
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-------------------GAGCGTGACACAACTACAGC-----------------------------------------
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>reverse_2932
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---------------------------------------------------TGAAAACCATGGGAGGCTCC---------
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