>input_sequence_86947
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----------------------------------------------------------ATGTGCCTGGTGGTGGTGTGCG
ACGAGCCGGAGCGCGTGGTGGCGACGTACCAGGCGGCAGGGCGTTGCCCCTACTGCGGCGGCGGGGTGGTGGCGACCGAC
GTGGAGAGCGCGCCCAGGCTCTGCTACGTCCCGCTCTGCTTCCGCGTCCGCCGCCGCTTCCACTGCTCCCTCTGCTCCCG
ACGGCTCGCCTCCATCGCCTGA----------------------------------------------------------
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>chr5A_1_TraesCS5A01G079200
CATCAATTTGAAATAAATTCATCAAATTTCAAAAAAGAACCGATCTGAAGAAAAAGTTCACATATTTGCTAAACTTTCAT
CGAACCAGGAAGAAAACGACTGAAAACAAAAAAGGAAAAAAAGAAAAAGAAGAAGAAGAAAAGTTGAATGTTACGAGATC
CTGCTGGGTGGTTATACCAGCCTACCTCAATGAAGGAGGTCGCTGGTTTGATTCACAACCAGCACGCTTTTTTCGGATTG
AAACACAGAAAGAAAAAAGCTAAATGGTCTAGCCCAGCGTTGGGACGCTTCAGGCATCCGTTTGTAAAATACAGAGTAAC
ATGCCTGAAGTCTAGATAGGAAACGCCCAGCTAGACAGCATCGGATCGACAACGCCCAATCCTAAAGCAATGTGAATGCA
CCACTAAAAAT--TCCCAATAAATCCTGATG-TTCAGATTTTAAACATGTCATTTCGAACTTTTTTTATGGCAACTTTAG
TTGATGTGAGATGGCAACTTCAGATGTTAAAACATGACAATTTTGAAATAGTTTTTTTCTTA-------GAAAATTGTCA
TGTTTGTCAACCTGCCTAAACCAAAATTGCCATAAAAAACGTTTGGATTGCTATGCTTAAAATCCGAATGTTCGGGATTT
ATCATCTCAAAGAAAAACTTCTGTGGATGCTTATGGTAGCCTGGTAGGTCGTCCTGTTTTACTGTTTCTCAATGGTAAGC
TGTTAGGCGTACTTTCGAAAAAAAAGAGAATCAGATGCTCCCGACCGCCTAGAATCCGCTTCGATTATTGCTCGTCCAAT
ACTAAAACACAAATGGAGTCATGTAGTGCTGCACCGAACACAGAGCACCGCACTTCACACACACACACATACCCCGCAAA
ACACACACACACACGCGCGCCTGAACAAGATAGAAACCGGAGGAGGCTTGACTTGGTGACAAGAAGAGAAGAAAACGGAA
GGATAGGT-ATCGGCTACCGTCTACCGAGAG-------AGGAGCCGTGAGGAGGGAGGATGTGCCTGGTGGTGGTGTGCG
ACGAGCCGGAGCGCGTGGTGGCGACGTACCAGGCGGCAGGGCGTTGCCCCTACTGCGGCGGCGGGGTGGTGGCGACCGAC
GTGGAGAGCGCGCCCAGGCTCTGCTACGTCCCGCTCTGCTTCCGCGTCCGCCGCCGCTTCCACTGCTCCCTCTGCTCCCG
ACGGCTCGCCTCCATCGCCTGATCCCTGATGCATATCTCTTCTCTTCTTCTACTCTCTTCTCTAGTACT-----------
-----------AGTACATATACATATCTTAGATGTCGTCTCCATGGATAT-----------AGAGGATAGCTGCGTCTCG
TATCGATTGTATCACGCGATATAC---TAGTACCTTTTTTCAATAAAAAACAAAGGTTCTCCTTAGCTCTGTGTACAACC
AGCGCAAGGACCTCTAAAACGAAATTTCATTATTATTATTTTGAGCTGAATGAAATTTCATTATTGCAG-TTGCAGGGAT
ATGATCAAATAGCTATCTCCGCTTCGTCAACGCTGAACGCTGAAACTCCTCTTTTTTACTTATTTGAGAAAACGGCCCTC
CAGTAACATGTTTGAGCTGATATTTACTTCTCAAATCCTATTGAGTCTCCAAATCCTTTGGTTTGTAGGAATTTTATAGG
ATAAGATTTGCAAAGAAAAAATTTCTTTGAGCCTTTTGGTCTGTAGGAATGAATTTTTATTCCTGTGTAGAATAGGAATC
AATCATCT--------------------------------CCATCCATGGACATCTCCCCAT------------------
--------ATCTCTAGTGTCACCGGCTTGCAGTTGATTTCTTCTTCCA----------------------TACAAGCCTG
CCCTGAGGTAGTAGGTTCATGGAATTGCTCTGCTGGACAATACATTTGAGACGATGAAACAATTTAGGGCCTCCTTGATT
CAAAGGATTTTCAAAGAACTTTTGGAGAATTCTAATTCTTAGGAAAAAAGTTATCTTGATTGTTTGATTCATAGGATTGT
AAACCATAGAATTTTTTATACAATTCATTTGCACTAGATTTCATAGAAAATATCCCATCTACTCAAACCTCTTTGAAAGA
ATTCTGCGTTTTTTCTATGCATAATCAAACACTCATACAATCCTGTAGAATTCAAGACGACATTCCACTCTAATCCCATG
TTTTTTTATTCCTGCGTTTTGAAAATCTTCTCTTTTTTATCAACCCGTGTTATGCAGCTCGCCTCTAGGCGGCGGCTCAC
GCTAGCGCCATGCTGGTCG
>chr5B_345
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------------------------GCCCAGCTAGACAGCACCGGATCGGCAACGCCTAACCCCAAAGCTCTGTGAATGCA
CCAATAAAAAAAATCCTAATAAATCCTAAACCTTCGGATTTTAAGCATGTCATTCCGAACTTTTTTTATGACAACTTTAG
TTGATGTGAAGTGGCAACTTCAGTTGTTAAAACATGACAACTTTGTTATAGTTTGTTTGTTTTTTGTCTGAAAATTGTCA
TGTTTGACAACCTGTCTGAACTAAAGTTGTCATGAAAAATCTTCGGACTGCTATGCTTAAAATCCGAATGTTCAGGATTT
ATCATCCCAGAGACAAACCTCTGTGGATGCTTG--------TGGTAGGTCGCCCTGTTTTACTGTTTCTCGGTGGTAAGC
TATCAGGCGTACTTTCGAAAGAAAAAAGAATCAGATGCTCCCGACCGCCTAGAATCCGCTTCGATTATTGCTCGTCGAG-
--TAGAACACAAATGGAGCCATGTAGTGCTGCACTTCACACAGAGCACCGCACTTCACACACGCACACA-----------
-----------------CGCCTGAACAAGATAGACATCGGGGGAGGC---ACTTGGTGACAGGACGAGAAGAAAACGGAC
GGATAGGT-ATCGACTACCGTCTGCCGAGAGG------AGGAGCCGTGAGGACTGAGGATGTGCCTGGTGGTGGTGTG--
----GCCGGAGCGCGTGGTGGCGACGTACCAGGCGGCAGGGCGTTGCCCCTACTGCGGCGGCGGGGTGGTGGCGACCGAC
GTGGAGAGCGCGCCCAGGATCTGCTACGTCCCGCTCTGCTTCCGCGTCCGCCGCCGCTTCCACTGCTCCCTCTGCTCCCG
ACGGCTCGCCTCCATCGCCTGATGC---------ATCTCCTCTCTTCTTCTGCTCTCGTCTCTAGTACTCCATGGATATC
TAGCTTGAAGTAGTACATATC-------TAGATCTCGTCTCCATGGATATCTGGGTCAAATAGAGGATAGCTGCGTCTCG
TATCGGTTGTATCACGCGATATACTAATAATTCCTTTTTACAATAGAAA-------------------------------
------------------------------TATTATTATTTTGAGCTGAATGAAATTTGATTATTGCAGCTTGCTTGTAT
ATGATCAAATAACTGTCTCCGCTTCATCAA------ACGCTGAAATTCCTCTTTTTTACTTATTTGAAAAACCGGCCCTC
CAGGAACATGTTTGAGCTGGTATTTACTTCTCAAATCCTATTGATAGTTGAAATGTTGAGATGCTTTACGATCTCACATC
AAGATCTTA-----------------------------------------------------------------------
AAACATCT--------------------------------GCAACCACGGATATCTCCCCAGATCTCTAGTGTCACTAGC
TTCCCCAGATCTCTAGTGTCACTAGCTTGCAGTTGATTTCATCTTCTTCCATGAACATGTGTAAACTGCTTACAAGCCTG
CCCTGAGGTAGTAGGTTCA-------------------------------------------------------------
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>chr5D_683
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----------------------------------------------------CCTGTTTCACTGTTTCTCAATGGTAAGC
TGTT-GGCGTACTTTGGAAAGAAAAGAGAATCAGATGCTCCCGACCGCCTAGAATCCGCTTCGATTATTGCTCGTCCAA-
--TAAAACACAAATGGAGCCACGTAGTGCTGCACCGAACACAGAGCACCGCACTTCACACACGC----------------
--------------------CTGAACAAGATAGAAACAGGAGGAGGCTTGACTTGGTGACAAGAAGAGAAGAAAACGGAA
GGATAGGTTATCGGCCACCGTCTACCGAGAGGAGGAGGAGGAGCCGTGAGGACTGAGGATGTGCCTGGTGGTGGTGTGCG
ACGAGCCGGAGCGCGTGGTGGCGACGTACCAGGCGGCAGGGCGTTGCCCCTACTGCGGCGGCGGGGTGGTGGCGACCGAC
GTGGAGAGCGCGCCCAGGCTCTGCTACGTCCCGCTCTGCTTCCGCGTCCGCCGCCGCTTCCACTGCTCCC---------G
ACGGCTCGCCTCCATCGCCTGATGC---------ATCTCCTCTCTTCTTCTGCTCTCGTCTCTAGTACTCCATGGACATC
TAGCTTGAAGTAGTAGATATC-------TAGATCTCGTCTCCATGGATATCTGGGTCAAATAGATGACAGCTGCGTCTCG
TATCGGTTGTGTCACGCGATATATTAATACG----TTTTTTAATAAAGA-------------------------------
------------------------------TATTATTATTTTGAGCTGAATGAAATTTTATTATTGCAGCAAGCTTGTAT
ATGATCAAATAACTGTCTCCGCTTCATCAAT------CGCTGAAATTCCTCTTTTTTACTTATTTGAAAAACCGGCCCTC
CAGGAACATGTTTGAGCTGGTATTTACTTCTCAAATCCTATTGATAGTTGAAATGTTGAGATGCTTTATGATCTCACATC
AAGATCTTA-----------------------------------------------------------------------
AAACATCTTCGGTTCAAAAAAAAAAGATCTTAAAACATCTGCAGCCATGGATATCTCCCCAGATCTCTAGTGTC------
----------------------------------------------------------------ACTGCTTACAAGCCTG
CCCTGAGGTAGTAGGTTCATGGAA--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS----------------S-------S-------S--S--S-----SS----------
---S------S-----S----------S-SS----S--------S---------S---------------S---------
---------SS------------S----------------S----SS-------S---S--S------------------
------S-------S--S---S---S---S---S-----SS--S---S-------------------------S------
------S--S---S----S-------------SSSSSSSSS----------S----------------------------
--------------------S----------------------------------------------------------S
SS----------------S-------------------------------------------S------SSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
----------------------------------------------------SS--------------------------
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-----------------------S-SSSSSSSSS-----S-----------S-----S----------------------
--------------------SSSSSSSS-----S----------------------------------------------
-----S-----------------------S-S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S---------------SS-S--
-----------S--S----------S----SSSSSS---------S---------------------S---S--------
---S---------------S------------------------SSS-SS----SS-SS-S-SSS-SSSS--S-S-S-SS
-SS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
--S-------------------------------------S--S-------S---------S------------------
----------------------SS----------------S-----SS--------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_692
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--------------------------------ATGGTAGCCTGGTAGGTCGT----------------------------
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>reverse_2280
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---------------------------------------TCAACCCGTGTTATGCAGCT---------------------
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