>input_sequence_86933
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------------------------------------ATGAGCAAGACGTCCTGGCCGGAGGTGGTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGACCCGACGTGGCGATCGAGGTGGTCCCCAATGGCACCACCGTCGCCCCGG
GGTACAACGCCGAGCGCGTCCGCGTCTTCTTTGA---------CGCCGGCAA---CGCCAGCGGCCCCGTCGTGGGAACC
CCTGCCGTCGGCTAG-----------------------------------------------------------------
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>chr7D_1_TraesCS7D01G166800
AAATGTGGTTGCCCGTGCATGCATGCCGGCTGGGCCTGGCTCGTTGCAAAGAAATTGATAAGTAATATACTGCTACGAAC
CATGGCAGAGAAGAACAGTGGTTTGCTAGCTAGCCGTCCACCAATTGTTTAAGTCTGCCACGTCCAGAGCTAGGAGCTAC
TAGTAATGCATGTGGCTGAAGAGAGAAAAAAAGAGATGGATGTAAGTGCATATTTTTGCACAGTGCGTCAGAGCGTAAGA
AAGACCAATGCTTGCATACACTCACATGCATTTTTAAGAGCGTACCGCCAAATACCATGGTGGTAGGGTTACACGGCCTA
TCACCAAAGACACTGGCGGTAAGCTATTTTTCACGTCAAATTACCGTGACGGTGCAGTTAAGTCTTACCGCCAGAGTTGT
TGGCGGTAGGTTGTGTAACCCTACCATTAATGTCTATGGCCGTAGGACAAAGGGTCAGATCTCAAAATAATTTCGAACCA
GGATCAGATCCTACTAAAGTTTCGTAAAGAGGTCAAAACACGAAATTTTGCCGCCCTAAACTTCTGCACAATTTCTATTG
TACGTGCGTGGGCATGGCGTATAATCTCTTTTTTTTTTTTTGCGCATCGGCGTATTAATCTCCTTGCACA----AA--TA
TAGTTTTCGAACA----ATACATACGC-------GTCACGCGTGTTG----TTGTCAGCGTGAGCTTAACAAAGGACGAC
GAAACCAA-GGTTCCGGCAAAGGAGCGACGTGCCCAATGACAGCCCGCC----TCATCCAAGGTCACAGATACGTACCAT
GCAGATGAGATGCATCGCCAACTCCAGCGCATATAAATACACACATTACCCGGCTCCACAACCACACACAACTGAAGCGC
TTGCCTTTGCATTGGTGCATACT---A------------------------------GCACTTG----TTTCGCGCAGTT
TGATTTCTATTCC------TTCCCAATC-CTTAGTGTGACCATGAACTAACGTTTTTGCAGACCAATCGAGCTTCCAA--
-ATCCGAGGAGATCA---AGGAGGAGGCCGCGGAAGATGAGCAAGACGTCCTGGCCGGAGGTGGTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGACCCGACGTGGCGATCGAGGTGGTCCCCAATGGCACCACCGTCGCCCCGG
GGTACAACGCCGAGCGCGTCCGCGTCTTCTTTGA---------CGCCGGCAA---CGCCAGCGGCCCCGTCGTGGGAACC
CCTGCCGTCGGCTAGCTAGCGCCTCACCTTGCCGCCAGCAGGTCAAGGGTTGAAGATCAAGAAGCCCTATTCGGCTGAAG
AAAGCATG----AAGATGCAAAGAAAACACACTTGAATAAAACAAAGTTA-TTGCTTTATGTATAAAGCGAGTGGAAAGT
CTTTTTCAATAATAAAATAAAGTCATAGAGCAACGTCCCGTCACTTTTGGCAAACTGGCAAGAAAATCATCGTTGGAGCA
TCTCTAATTGATG---------CCAAAAAATAACTCGCTGTATACATCCATGAAACACATT-AAGTCCTCAAGAATACAG
GGAGAGCCAATACATTGCTCCCTTCCGAAATACTACCGGGAGAAATGACACACACTGAAAAGAAAAACATGTCTAATGTG
CAAACTTCGGGCAGGTGGGATTTTCGTTTGCAATCCTCGTGGGCCGCCGCCGGCGGCAACCATCTGGTCATGTTGGCGCT
TGCCGCACCCTTCTTCAGGAGTTCATCGGCATAAGAACCTTTGTGGGAGGCCGCGTTGTTGCCGCTCCCTCTCCCAGTAC
CGACCCCGTGCCTCCAGTGTCCTCCTGGAACGGACACATCGGCTGGCCTCTAATATGTCA---TCGTCCAACCACTTTGA
ACTCTGTGCCGATAACCAAACTCGACCATGAGCTCGTTCGTAACGACACCACCCTCACCATTGACGGGTTAAACAGGACG
ACCGCCATGGACTTGAGGGAAGGAGACGATGATGCTGATATGGTTTGTTTCGCAGTAATGCAAGTTGTTGATTTACTTAG
TTCTTAATCCGGTATGTGGCGATTAATTTAGTCGCATTGTAGGTCTTTCAGTACATCATAAAACATAAATATATGTCTTT
ATGTTCAAATCATGTATTTTTCTACTCTTATTGAATAATTTATACTATTTTGCAACATACTCCATGGCACAAATTCCCAT
CTTTGTACTCCAATGTCTAAAGGGTTAATTGGATCTATGCCACCACAACTT----GAGTTGGCAAAATGCCATTACA
>chr7D_604
GCATGGCGTA----------------------------------------------------------------------
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-------------------------------------------------------TAATCTCCTTGTACA-----A--GA
TAGTTTTCGGACA----ATACATACGT-------GTGT----TGTTG----CTGTCAGCGTAAGCTTAACAAGGGACGAC
GAAACCAA-GATTCCGGCAAAGGAGCGACGTGCCCAATGCCAGC--------------------------TACGTACCAT
GCAGATGAGATGCATCGCCAACTCCAGCGCATATAAATACACACACGACCCAACTCCACAACCACACACAAGTGAAGCAC
TTGCCTTTGCAGTGGTACACACT---ACTAGCCAGGTCGGTCGGCATCGATCTGCTAGCACTGCTTGTTTTTGCGCAGTT
TAATTTCTATCTC------TTCCCAGCCTCTGAGTGTGACCATGGTCTAACGTTTTTGCAGACTGGTCGAGCTTGCAG--
-GTCCGAGGAGATCA---AGGAGGATGCCGTGGGACATGAGCAAGACGTCTTGGCCAGAGGTGGTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGACCCGACGTGGCGATCGAGGTGATCCCCAATGGCACCACCGTCGGCCCGG
GGTACAATGCCGAGCGCGTCCGCGTCTTCTTTGC---------CGCCGGCATCGTCGCCACCGGCCTCGTCGTGTCCACC
CCTGCCGTCGGCTAGCTAGCGCCTTACCTTGCCGCCTGCAGGTCAAGGGTTGAAGCTGAAGAA-----------------
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>chr7B_604
GCATGGCGTA----------------------------------------------------------------------
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-------------------------------------------------------TAATCTCCTTGCAGA----ATAGTA
TAGTTTTGGCACAATATATACATACGCGTCACGCGTGT----TGTTGTCACTTGTCAGCGTGAGCTTAACAAGGGACGAT
GAAACCAA-GGTTCCGGCAAAGGGGCGACGTGCCCGATGCCTGCCCGCC----TCATCCA-------AGATACGTACCAT
GCAGATGAGATGCATCGCCAACTCCAGCGCATATAAATAGACACATGACCCGGCTCCACAACCGCACACAAGTGAAGCAC
TTACCTTTGCATTGGTGCATACT---AAGT-----------------------------ACTTG----TTTCTCGCAGTT
TGATTTCTATTCC------TTCCCAATC-CTTAGTGTGACCATGAACTAACGTTTTTGCAGACAATTCGAGCTTGCAA--
-GTCCGAGGAGATCG---AGGAGGAGGCCGCGGAAGATGAGCAAGACGTCTTGGCCGGAGGTGGTTGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGGCCCGACGTGGCGATCGAGGTGGTTCCTAATGGCACCACCGTCGCCCCCG
GGTACAACGCCGGGCGCGTCCGCGTCTTCTTTGA---------CGCCGGAAA---CGCCAGCGGCCCCGTCGTGGGAACC
CCTGCCGTCGGCTAGCTACTGCCTCACCTTGCCGCCAGCAGGTCAAGGGTTGAAGCTGAAGAAGCCTTATTCGGCTGAAG
AAAGCGTGTGTTAAGATACAAAGAAAACACACTTGAATAA----------------------------------------
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>chr7B_604
GCATGGCGTA----------------------------------------------------------------------
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-------------------------------------------------------TAATCTCCTTGTACA-----A--GA
TAGTTTTCGAACA----ATACATGCGC-------GTGT----TGTTG----CTGTCAGCGTGAGCTTAACAAGGGACGAC
GAAACCAA-GATTCCGGCAAAGGAGCGACGTGCCCAATGCCAGC--------------------------TACGTACCAT
GCAGATGAGATGCATCGCCAACTCCAGCGCATATAAATACACACGCGACCCAACTCCACAACCACACACAAGTGAAGCAC
TTGCCTTTGAAGTGGTACATACT---ACAACCTAGGTCGGTCGGCATCGATCTGCTAGTACTGCTTGTTTTTGCGCAGTT
TAATTTCTATCTC------TTCCCAGCCTCTGAGTGTGACCATGGTCTAACGTTTTTGCAGACTGATCGAGCTTGCTG--
-GTCCGAGGAGATCA---AGGAGGATGCCGTGGGACATGAGCAAGACGTCTTGGCCGGAGGTGGTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGACCCGACGTGGCGATCGAGGTGATCCCCAATGGCACCACCGTGGCCCCGG
GGTACAATGCTGAGCGCGTCCGCGTCTTCTTTGC---------CGCCGGCATCGTCGCCACCGGCCTCGTCGTGTCCACC
CCTGTCGTCGGCTAGCTAGCGCCTTACCTTGCCGCCAGCAGCTCAAGGGTTGAAGCTGAAGAA-----------------
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>chr7A_604
GCATGGCGTA----------------------------------------------------------------------
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-------------------------------------------------------TAATCTCCTTGTACA-----A--GA
TAGTTTTCGAACC----GTACATACGC-------GT-------GTTG----TTGTTAGCGTGAGCTTTACAAGGAACGGC
GATACCAAAGGTTCCGGCAAAGGAGCGACGTGCCCAATGCCAGCCCG-----CTCATCCAAGACCACAGATACGCACCAT
GCAGCTGAGATGCATC-CCAACTCCAGCGCATATAAATACACACACGACCCAACTCCACAACCACACACAAGTGAAGCAC
TTGCCTTTGAAGT-------------------TAGGTCGGTCGGCATCGATCTGCTAGCACTGCTTGTTTTTGCGCCGTT
TAATTTCTATCTC------TTCCCAGCCTCTGAGTGTGACCATGGTCTAACGTTTTTGCAGACCGATCGAGCTTGCAG--
-GTCCGAGGAGATCAAGGAGGAGGATGCCGTGGGACATGAGCAAGACGTCTTGGCCAGAGGTGGTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGACCCGACGTGGCGATAGAGGTGATCCCCAATGGCACCACCGTCGCCCCGG
GGTACAATGCCGAGCGCGTCCGCGTCTTCTTTGC---------CGCC------------ACCGGCCTCGTCGTGTCCACC
CCTGCCGTCGGCTAGCTAGCGCCTTACCTTGCTGCCAGCAGCTCAAGGGTTGAAGCTGAAGAA-----------------
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>chr7A_604
GCATGGCGTA----------------------------------------------------------------------
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-------------------------------------------------------TAATCTCCTTGTACAGTACAA--GA
TAGTTTTCGGACA----ATACATACGC-------GTGT----TGTTG----CTGTCAGCGTGAGCTTAACAAGGGACGAC
GAAACCAA-GATTCCGGCAAAGGAGCGACGTGCCCAATGCCAGC--------------------------TACGTACCAT
GCAGATGAGATGCATCGCCAACTCCAGCACATATAAATACACACACGACCCAACTCCACAACCACACACAAGTGAAGCAC
TTGCCT---------------------------AGGTCGGTCGGCATCGATCTGCTAGCACTGCTTGTTTTCGCGCAGTT
CAATTTCTATCGCTTCCCATTCCCAGCCTTTGAGTGTGACCATGGTCTAACGTTTCTGCAGACTGATCGAGCTTGCAG--
-GTCCGAGGAGATCAAGGAGGAGGATGCCGTGGGACATGAGCAAGACGTCTTGGCCGGAGGTGCTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGACCCGACGTGGCGATAGAGGTGATCCCCAATGGCACCACCGTCGCCCCGG
GGTACAATGCCGAGCGCGTCCGCGTCTTCTTTGC---------GGCCGGCATTGCCTACACTGGCCTCGTCGTGTCCACC
CCTCACGTCGGCTAGCTAGCGCCTTACCTTGCCGCCAGCAGCTCAAGGGTTGAAGCTGAAGAA-----------------
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>chr7A_616
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-------------------------------------------------------TAATCTCCTTGCACA-----A--TA
TAGTTTTGGAACA----ATACATACGCGTCACGCGTGT----TGTTGTCATTTGTCAGCGTGAGCTTAACAAGGGACGAC
GAAACCAAAGGTTCCGGCGAAGGGGCGACGTGCCCAATGCCAGCCCGCCCGCCTCATCCAAGACCACAGATACGTACTAT
GCAGATGAGATACGTACT------------------ATACACACACGACCTGGCTCCACAACCACACGCAAGTGAAGCAC
TTGCCTTTGCATTGGTGCATACTGGTACTAGCCAGGTCGGTCGGCATCGATCTGCTAGCCCTTG----TTTCGCGCAGCT
TGATTTCCATCTCTTCCCAATCC-------TTAGTGTGACCATGAACTGACGTTTTTGCAGACCAATCGAGCTTGCAAAA
AGTCCGAGGAGATTAAGGAGGAGGCCACGGAAGAAGATGAGCAAGACGTCCTGGCCGGAGGTGGTGGGCTGGCCGGCGAC
GCAGGCCGTGACGCAGATCAACGCCGACAGGCCCGACGTGGCGATCGAGGTGGTCCCCAATGGCACCACCGTCGCCCCGG
GGTTCAACGCCGGGCGCGTCCGCGTCTTCTTTGACGCCGGAAACGCC------------AGCGGCCCCGTCGTGGGAACC
CCTGCCGTCGGCTAGCTACTGCCTCACCTTGCCGCCAGCAGGTCAAGGGTTGAAGAT-----------------------
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>chr7A_1245
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----------------------------------------------------AAGATCAAGAAGCCTTATTCGGCTGAAG
AAAGCATG----AACATGCGAAGAAAACGCACTTGAATAAAATAAAACCTGTTGCTCTATATATAAAGCTGGACG-AAGC
CTTTTTCGACAATAAAATAAAGTCATAGAGCAATATCTCGTTATTTTTGGCAGACTGGCAAGAAAATCATAATTGGGGCA
TCTCCGAAACACATTTAAGTCCCCAAAAAATAACTCGCTGTCTACATCCAGGAAACACATTTAAGTCCCCAAAAATAGGG
GGG----CAGTACACTGCTCCGTTCCGAAATATTGGGACAAAATG----ACACACTGAAAAACAAAAC-TGTCTAATGTG
CAAACTTCGGGCAGGGAGGATTTTTGTTTGCAATCCTCGTCGGCCGTCGCCGCCGGCAACCATCTGGTCACGTTGCCGCT
TGCCGCACCCTTCTCTAGGAGTTCGTCGGCATAAGAACCTCTGTGGGAGGCCGCGTTGTTGCGGCCCCCTCTCCCAGTAT
CAACATGCGCCTCCAGCGG-CCTCCTGGAACGGACACATCAGCTGGCCTCTAATATGTCGTCGTCGTCCAACCACTTTGG
ACACGGTGCCGGTAACCAAACTTGACCATGAGCTAGTTCATAATGACACCACCCTCACCATTGGCGGGTAAAACGGGACG
ACCGCCATGGACTTGAGGGAAGGAGACCATGATGCTGATATGGTTTGTTTCTCAGTAATACACGTTGTTGATTTACTTAG
TTCTTAATCCAGTATGTGGTGATTAATTTAGTCGCATTGTTTGTCTTTCA-TACATCACAAAACATACACATATGTTTTT
ATGTTCAAATCAAG---------------------TATTTTATACTTTTTTGCAACATACTCCATGGCGCAAATTCCCAT
CTTCGTACTCCAACGTCT-AAGGGTTAATTGGATCCATGCCACCACAGCTTTCACGAGTTGGCAAAATGCCATTACA
>SNPs
SS---SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
------------------------------------SSSSSS------------------------------S-------
---------------------------------------S----------------------SS----------------
----------------------------------------------S------------------------S------S-
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--------------------------------------------------------------------------S-----
-S------------------------------------------------------------------------------
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------------------------------------------------------------------S-------------
------------------------------------------S---SSSS------S---S--------SS-SS-S---S
-------S-S-----------------------SS--S---S-S--------S-----------------SS----S---
----SS-SSS-SS----------------------------S--------S-----------------S---S----SS-
--SSSSS--S----S------S----------S-SSSSSS-S-SSSSSS------------SS-----S-----------
---------------SS-------S---------------S-----S-----S-----------------S----S----
--------------SS--------S---------------S---------------------S--S-------------S
-S--SSSSSS-SS-SSSS-S--------------------S------------------S-------------------S
--S-S------S----------S-----------S----S---S-------------------S-----S----S-----
---------------------------S-----------------------S-------S--S-----------------
----------S--------S--------------------SS--------S-------S--------S-S------S---
------------S-SSSSSSSSSSSSSSSSSSSSS--S--------S---------------------S-----------
---S---------S----S----------------S-----------S-----------------------------
>forward_411
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-----------------------------------------------------------------------CAGAGTTGT
TGGCGGTAGGT---------------------------------------------------------------------
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>reverse_1984
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---------------------------------------------------------------ACGGGTTAAACAGGACG
ACC-----------------------------------------------------------------------------
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