>input_sequence_86920
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----------------------------------------------------------ATGCTGATACTGGAGCTCGGGG
CTTGCATCATCCCAATGACGCTCATCTTCGTGCCGGCCCGGCGGCTGGTCCTCCTGGTGGCCAAGCTGCAGGAGCTGGAG
GAATGCTTACGGCGCCCGAGGCCGCTGTCCCCCGGGATGCCGCAGATGTCCGCCGAGATGTACGGCCGCATGTCGAGCCT
GCACACCATGGCCATCATGGTGTGA-------------------------------------------------------
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>chr4A_1_TraesCS4A01G012700
AACATTCGGAGTGAAGCTCATGTGATTCCCACAAATAATATCCACTTCATTCCTTTGGTGTTAGTATTTGAGTGCACCCC
AAACACTAATGCCAATTTTAAGGTTGTAGGAGTATTTAGATATTTAACTTGACCGTCCATATAATTTCCTCTTCATTGAC
TTGCTTGACCATTGGAATTATTAAACATTGTTAATTAGACTTCGAGCCATAGCTCCTATAATTTTAAGGCTCACTCGGTT
TACCAAACTTCCGAATCAAAGAAATAAGAAATGTAAAGGATTTATAAGCCCTCTCTATTGCAATCTTTAGGATTTCTTCA
CGAGGTATTACTCAATGCTAAGAATTCTTAGGAATTTTCCATATAGGATGATGCAGGCGGGTATTTTTTTTCTTCGACTG
CAATGCACGGGCATATTTGCTAGTAAATATCTATACAACCAAATCTTATTACACAATATCATTTGTATTTTCAATTTTAA
TTGTCGTATTATTCCAAA--TCTCCATGTTCCCATGCAACCAAATCTCATTAGAATATATTGCAAAATATTCCGGCAACA
ACTGCCG-GGTTTCATCTAATTAATTAATCCTCCTGAGACTGACCTGTTTCTGTGATTCGTGTGAAGCTCCGCCATTTTT
TTTAGGATGTGTGAAGCTCCGCCATTGATA------------------------------------------------GG
TCCCCTCACGTTCTTCTTCGTCGTCGTGAAAAAATAAACATTTCTGTAGCTGCCCCGTCGTGTGTCATGGACTCGAAAGT
CGCAGCAATCAGTTCATAACGCACTGACG---GCAATCATTAGA----GAGGATGTAAACTAAGCGCCATT----GATTG
CCAATAATCAACCAGGGTCCAGATAAGTGAGCGTTTCTTTTTTCTTCCAAAAAGAAGGCTATATATGCAAGCAACTCCCC
AACTGCAACTCTACAAGGCAAAGCGA---CATTTATCCAAGGAACCGAGAAAGCTACCTAGACGGCCTGA----------
---GCAACCCAGCTG----CTTGCTCTGTGGAATA---------------------------------------------
---------------------------------------------------AGCAGCCATGCTGATACTGGAGCTCGGGG
CTTGCATCATCCCAATGACGCTCATCTTCGTGCCGGCCCGGCGGCTGGTCCTCCTGGTGGCCAAGCTGCAGGAGCTGGAG
GAATGCTTACGGCGCCCGAGGCCGCTGTCCCCCGGGATGCCGCAGATGTCCGCCGAGATGTACGGCCGCATGTCGAGCCT
GCACACCATGGCCATCATGGTGTGAAAGTTCGGCCCGGCCGCCTTCAGGTGCGCGCGCTCTCCGGCCGGGTCGATGGCGA
TTCCTGCGCTGGAGGTGCGCCAAGGTGGGGACAGACTTCTTCACCTTCTGCAGGCCGATTCTCATATTTCTGCGAGGATG
AGCGAACCGGAGCTCCCAGTAGTTGTATCTAGATCGTGTATGACTCTGTGAATACCTCTTCTCCTTCTTTCTGTTGTCAA
ATTGTTTCTTCAGACATCTTGCTGTAACAAAAAGGAGTTACGAACCACAGTGGTTCAGGCTTTGTGTGCTTTCGCCCTCT
TTCTGACATGTGTTTCCAGGCACATAGGCTGCTGCAATCCTGCAGGCAAATGATCTTTTACTGA--ATGAAGTGTAATTT
TGACACTAACAGACCATGCAGATCTAGTACGGTAGAGCCATACGCCCAGGCCAACGTGTCATTCATGAAAATGATCGACG
GGTTTCACCAGGCAGCCGATAGACTTCTTTAATTGCTATGTAGTTTTGGTCATTGGGAGTGTTTTTTTAATACTCCCTCC
ATTTTTTTATACAAGGCAACTATAAAAAACACATTTTGCATCTATACAAGGCCACCAACAATAATCGAGGCAAATATTAA
TGATGTTTTCTTGTACTAGTAACCCATGATTTAATTAGCATGCATGTAGTTGATGATAATGACACCCTCAACTACTTCCT
CCCTCCTGGCCACTCAGTTTCCACTAATACGCATGCACCCTATTAATTAACCTAGTAATCAAGAAAACAAATTGGCATGT
AAAGCTCGCATTAATATTTATCTTGGTACCTGTAGTTTGAGTTTGTGGCCTTATATATAAAAATGGAGGGAGTAGCTTGG
ATTGAATTGCTTACCACATGTGTGTGGTCATCGGGAGTTTTTTTTTTAAGCTGGCACCGGGAGTGTATTTTACATGGGCT
AAGTTGCACAGGCTGTTTTTCTTAGCTAATGGTTACTCTTTTTTTGTTGGACCAGATGCCTGTGCAT
>chr4B_421
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--------------------TAATAAATATCTATACAACCAAATCTCATTACACAACATCATTTGTATTTTCAATTCTAA
TTGTCACATTATTCCAA--ATCTTCATGTTCCATA-CAACCAAATCTCATTAGAATATATTGCAAAATATTCCCGCAACA
ACTGATG-GGTTTCATCTAATTAATCAATCCTCATGAGACTGACCCGTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGG
TCCCCTCACGTTCTTCTTCGTCGTCGTGAAAAA-TAAACATTTCTGTGGCTGCCCCGTCGTGTGTCATGGACTCGAAAGT
CGCAGCAATCAGTTCATAACGCACTGATGACAGCAATCATTAGA----GGGGATGTAAACTAAGCGCCATT----GAATG
CCAATAATCAACCAGGGTCCAGATAAGTGAGCGTTTCTTTTTTCTTCTAAAAAGAAGGCTATATATGCAAGCAACTCCCC
AACTGCAACTCTACAAGGCAAAGCGA---CACTTACCCAAGGAACCAAGAAAGCTACCTAGACGGCCTGA----------
---GCAAC------------------------------------------------------------------------
---------------------------------------------------------CATGCTGATACTGGAGCTGGGGG
CTTGCATCATCCCAATGACGCTCATCTTCGTGCCGGTCCGGCGGCTGGTCCTCCTGGTGGCCAAGCTGCAGGAGCTGGAG
GAATGCTTCCGGCGCCCGAGGCCGCTGTCCCCGGGGATGCCGCAGATGTCCGCCGAGATGTACGGCCGCATGTCGAGCCT
GCATACCATGGCCATCATGGTGTGAAGGTTCGGCCCGGCCGCCTTCAGGTGCGCGCGCTCTCCGGCCGGGTCGATGGCGA
TTCCTGCGCTGGAGGCTCGCCAACGTGGGGACAGGATTCTTCAGCTTCGTGAGGCTGATTCTCAAATTTCTGCGAAG---
-------CGGAGCTCCCAGTAATTGTATCTAGATCGTGTATGACTCTGTGAATACCTCTTCTCCTTCTTTCTGTTGTCAA
ATTGTTTCTTCAGACATCTTCATGTACCAAAGAGGACTTACGAACCACAGTGGTTCAGGCTTTGTGTGCTCTCGCCCTCT
TTCTGACACGTGTTTCCAGGC-----GGCTGCTGCAATCCTGCAGGCAAATGATCTTTTACTGA--ATGAAGTGTAATTT
TTCCCCTAACAGACCATGCAGAGCTAGTACGGTAGAGCCATACGCCCATGCCAACGTGTCATTCAGGGAAATGATCGACA
GGTTT---------------------------------------------------------------------------
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>chr4D_421
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--------------------TAATAAATATCCATACAACCAAATCTCATTACACAATATCATTTGTATTTTCAGTTTTAG
TTATCATATTATTCCAAAAATCTTCATGTCCCATA-CAACCAAATCTCATTAGAATATATTGCAAAATATTCCGGCGACA
ACGTATGTGGTTTCATCTAATTAATTATTCCTCCTGAGACTGACCCGTCTCTGTGATTCGTGTGAAGCTCCGCCATT---
--------------------------GATA------------------------------------------------GG
TCCTCTCACGTTTTTCTTCGTCGTCGTGAAAAA-TAAACATTTCTGTAGCTGCCCCGTCGTGTGTCATGGACTCGAAAGT
CG------------------------------------------------------------------------------
-------------------------------------------------------------TATATGCAAGCAACTCCCC
AGCTGCAACTCTACAAGGCAAAACGA---CATTTATCCAAGGAACCGAGAAAGCTACCTAGACGGCCTGA----------
---GCAACGCAGTTG----CTTGCTCTGTGGAATA---------------------------------------------
---------------------------------------------------AGCAGCCATGCTGATACTGGAGCTGGGGG
CTTGCATCATCCCAATGACGCTCATCTTCGTGCCGGCCCGGCGGCTGGTCCTCCTGGTGGCCAAGCTGCAGGAGCTGGAG
GAATGCTTCCGGCGCCCGAGGCCGATGTCCCCGGGGATGCCGCAGATGTCCGCGGAGATGTACGGCCGCATGTCGAGCCT
GCACACCATGGCCATCATGGTGTGAAGGTTAGGCCCGGCCGCCTTC--GTGCGCGCGCTCTCCGGCCGGGTCGATGGCGA
TTCCTGCGCTGGAGGCGCGCCAAGGTGGGGACAGGCTTCTTCGCCTTCGTGAGGCTGATTCTCAAATCTCTGCGAGGATG
AGCGAAACGGAGCTCCCGGTAATTGTATCTAGATCGTGTATGACCCTGTGAATACCTCTTCTCCTTCTTTATGTTGTCAG
ATTGTTTCTTCAGAAATCTTGCTGTAACAAAATGGACTTACGAACCACAGTGGTTCAGGCTTTGTGTGCTTTCGCCCTCT
TTCTGACATGTGTTTCCAGGCACATAGGCTGCTGCAATCCTGCAGGTAAATGATCTTTACTGAATGATGAAGTGTAATTT
TTCCACTAACAGACCATGTAGACCTTGTACGGTAGAGCCATACGCC-AGGCCGACGTGTCATTCAGGGAAATGATCGACG
AGTTTCACCAGGCAGCTTATAGAC--------------------------------------------------------
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>chr2B_767
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-----------------AACGCAC---TGACAACAATCATTAGAGCCAGGGGATGTAAATTAAGCGCCACCGTACGTACG
CCAATGAGCAA-CAGGGTAGAGATAAGAGAGCGTTTTCTTCG----CCAAAAAGAAGGCTATATATGCAAGCAACCCCCC
AACTGCAACTCCACAAGGCAAAGCAACAGCACTTACCCAAGCAACGAAGAAAGCTACCTCGCCCGTGAAGTAGGGAGCAC
ACGGCGACCCAGTTGCTATCTTGCTCCGTGGAGAAGGGAAAGGGAGGGAAGCTTGCAAAGGCACAGCAACTGCCGAGAAA
CCTGGGCGGGAAGAGATCAGCAAGCGAGAAGCGAGAGCGTGGAGCTAGTTGAGCAGCCATGCTGATACTGGAGCTGGGGG
CGTGCATCATCCCAATGACGCTCATCTTCGTGCCGCTCCGGCGGCTGGTCCTGCTGGTGGCCAAGCTGCAGGAGCTGGAG
GAATGCTTCATGCGCCCCAGGCCGCCGCCC---------CCGCACATGTCCGCCGAGATGTACGGCCACATGTCCACCCT
GCACACCATGGCCATCATGGTGTGAA------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--S-----------------------S---------------------------------
-----S-----------------S--------SSSS--------------------------------------------
----SS---------------------------------------S--S----------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------------------------
---------------------------------S----------------------------------------------
---------------------------S---------------------S---------------------------S--
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------------S-------------------------------------------------------------------
---------------------------------------------------------------------------S----
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--------S-----------------------S-----------------------------------------------
--------------------------S-----------------------------------------------------
---------------S------------------S-------------SSS----S--------S---------------
------S--------------S----------------------------------------------------------
------------------------------------S-------------------------------------------
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-SS-------------------S------------------------------------------S-S------------
----------------SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_87
-------------------------------------------------------------------TTGAGTGCACCCC
AAACACT-------------------------------------------------------------------------
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>reverse_2260
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-------------------GTGTGTGGTCATCGGGAGTT-----------------------------------------
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