>input_sequence_86894
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-------------------------------------------------------ATGAGGAAGGGGCTTCATCCCCAGA
TGCAGTGGATCTCGTACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCATACCGGCAAGGTG
TACCACATGAGGGCGAAGCGGCAGATGGCACAGAGCCTGGGGCAGATTGCCAAGTTCAAACGCCGATACGAGCAGGAAGC
GCCGGAGGAGAACCAAGACAAGTAG-------------------------------------------------------
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>chr5B_1_TraesCS5B01G280200
CTCCAGCGCCCCTCTCTCTCTCACACACGAGTCACCAGCGG-AAGAGCAGCGGCGGCGTCCGGCGGCG-CGCGTCGAGGT
GCTGCCCCTCTCCTCTCCCTCGCCCCCTTCCCCTTAGGGCTGCTCTGCCCCCTCTCTCTCTCGGGCGTCC------CCAT
GGGTGGCTGACGGCGGCGGCGTTGGATGCCCTCTCTCCCTGCTCTGGTTCCCCTCCCCCTCTCTCCACCCTGATCTGTTT
TTTCCTCTCCGAGCTGCAGCGCGAAGGAGGACAGGGACGAGCGGCAGGCCGGCGACCAGCAGCACCCCTCTCTTCTTCGT
CGGTGATTCCTCCCCAGGTACTGTAACCCTAGCTGTTCGATCTGTTTGGACAGTAGATTCGCTGATCTGTTTG-------
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--------------------------------------------------------------------------GGCTCG
GCTAGGACAATAAGTATGCAGG--TGCAGACTATCTGTAACC-GAAAGTAGCCAAATGGCCTAAATCAAAATATGCACTG
CTCAGTTCTTAACCACCTTAACAGAATCAGATCAGC--------------------------------------------
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------------------------------------------------------AGCAGCTGGAAACTAGAGCACAGCGT
CTGTCCAGTAGAATCGCCCATGGAGCTGCTCAAGTCATATTTCCATGTCCGTCTGCAGACCATGCTAACTTCTTTTGCAA
-CCAAGTGTTCTAGTGGCCAAACATGACCACAGCGAGTCGAGAATTTTAAAGTACCAGTACCATTTATAGTCTCTCAGCA
ATCATATGACCGAACCCTTTCTTTGGATGTGTTACTCCTGCTATATTGCAAACTTGGAATAATTGTTATGATAGGTCCTA
CGTTAACCATGGTGTATGCTTTCTTAGG----------------------------------------------------
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-GAAATCATGGTGAATGTTGATCATGTTTTTGTAAGTAATATTTTTGAGA--------GGTGAATGCTGATCATGATTTT
GTAACTTACGCGTGTCTGTTGAGGAAATGGATGTTTCTTCCATGGTTAACATCTGGAAACCCGAT---AATAGATATGTA
TTACTATTTCATCCCTTTTGTCTGATGATCCTGCGTATGGTTCCAGGTTGGAAGGATGAGGAAGGGGCTTCATCCCCAGA
TGCAGTGGATCTCGTACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCATACCGGCAAGGTG
TACCACATGAGGGCGAAGCGGCAGATGGCACAGAGCCTGGGGCAGATTGCCAAGTTCAAACGCCGATACGAGCAGGAAGC
GCCGGAGGAGAACCAAGACAAGTAGGACACTGCTGTTTGCAGAGGAGCCATAGATTCTCCTTAGCCTTAAGCTGCGTCAT
CAGATTTTAGTTAATGAACTTTGGTCGTGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAAACCTCTGCAAGGTT
GCGTTACTTGCATGTTGGGATTCTCTAAGTCGTAAAACAAAAAGGAA---TGGAACCAATTAGTTTCTGTTTTTACATCA
GTTAATGGTTGGGCATGCCAACATGTCTTTC------TTCTGTTTCTAATGCATTAGT----------------------
--------------------------TTGCTTGAAATCCTTTGCTGTAATTGAGAGATCGATGTGAACAAAGCTCAGCGG
TTC-TTGTGCTGCTTACCTTGCAGGCTTTGCACAACGTGGGCTTCTGAGAACTCAGTTCAACAACTTTGGTTACTTCAAG
ATGATGATGAGTTTTGCCGGGATGGTGATTGGCTAAAATTTGATTTAGTTTAGCCTGGAGGAGGAGGAACATGAAGAGAT
GGAGGCACTGAAGCTGTGGAGGCGGCAGTGTTCACAGTTCACAAACCAGTAGGATGCTTCAACTTACCGTGCCTTCTATA
TCGATCTAATCTTTTCCATAAGCAGCTAAGAAATGCACCGCATCATTTCAAGCACAATTATACGAGAACAATTGGTAGAA
TATCCATCAGTAAAACATGCTGACCTCTTCTAATATCGTTCATTTCCTGATCATTTTCCAACGTCAATTGAACAAATGAA
CAAAATCTTGCGTAACAGCCAACACCTGCTCATTTTCCCCACTTTATCTGTCTACATGAAACATTGGCACAATTTCACAT
CATAAAAC-ATTCGGCAGTTGTGTTGTGATAAATTTTAAGAAACAAAGTACGGTTATCAAATTTCAGACAACTATCGTTG
GCCCATTATGATAGTTTGGAAATAATGCATCATAAACAATATACTTTGGCATGATTCAACATTGCACAATTGCTAATTAG
GCATCTAAATGTTACTATTTCCAAAGGCATCTAAATGTTCAACA
>chr5A_1
CTCCAGCGCCTCTCTCTCTTTTCCT--CGAGTCACCACCAGAAAGAGCAGCGGCGGCGTCCGGCGGCGCCGCGGCGAGGT
GCTGCCCTTCTCCTCTCTCTCGCCCCCTTTCCCTTGGGGCTCCTCTGCCCCCTTTCATTC--GGACGTCCCCATGGCCAT
GGATGACTGACGGCAGCGGCGGCGGATGCCCTCTCTCCCTGCTCTGGTTCCCCCG---CTCTCTCTCCCCTGATCTGTT-
TTTCCTCTCTGGGCTGCAGCGCGAAGGAGGACAGGGACGAGCGGCAGGCCGGCGACCAGCAGCACCCCTCTCTTCTCCGT
TGGTGATTCCTCCCCAGGTACTATAACCCTAGCTGTTCGATCTGCT----------------------TGTGCATGCTGA
TCTGAAGTACTGTTCGTGTGCGGTTTGTGTGTATGCGATGGCTCGTGTTTATGCCCTGTATAGCATGCTTCTTTATGATT
GGTTAGCTGCAGTTCCGAGGACAACA-TACTTCAGTTTTGTGCAGCGCCTGAATCTAGCTGGCCGGCGCGCCCTCGATCC
CGCCCATCCCACTGGCCGGCGCAGCCACCCGCTCCCCATCTCGCCCATCTTCTTCTTCCACATCTTCTTCCCCTTCCTCT
TCCATCTTCTTCCCCCCTTCCCTGGATCCC--------------------------------------------------
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----------CCTTTTTCTCTTCTTTATTTACTTGCCCAG----------------------------------------
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------------------------------------------------------GCAGCCCCTTCTAAGTTCCTCCTCTT
TCTTTGTTCCTATTCTTCCCCTGCTCTCCATGCACATGAATTTACTGACCACAGATTCATCTTTTGCAGGGTGTGCAAAT
ATTATTTGGGGTCGTCCTACATTT-----------------------------TTAGAATATTTGTTATTTTTATTGCTA
TATGATCATTCAATTATACTTACTCATTGTGTAGATTTTGATTTGATGCATAAAGCACAAAGCATAGGCAATTCCATAGT
TTGTCATCCGAACATGATTTGGTATTGAAAACCCATTGAGATTCCAAGGCCCAATTTCATGAGCATCCAAACATGTGAAT
TCGTATTCAAGTCCATTACAATTTCCTCCCTGAATTGGAACTGAAACCAATTCAATACGGAAGCCTTCAATACATACATC
CGAACACAGCGTGCATGTTGAGCATGATTTGCGTGTAATGTTGTTTTAGGGAAATCATGGTGAATGCTCCTGATGATTTT
GTAACTTATGCGTGTCTGTTGAGTAAATGGATGTTTCTTCCATGGTTAACATCTGGAAACTTGATAACAATAGATATGTA
TTACTATT-CACCCCTTTTGTCTGACGACCTTGTGTATGCTTCCAGGTTGGAAGGATGAGGAAGGGACTTCATCCCCAGA
TGCAGTGGATCTCGTACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCACACCGGCAAAGTG
TACCACATGAGGGCGAAGCGGCAGATGGCTCAGAGCCTGGGGCAGATCGCCAAGTTCAAACGCCGATACGAGCAGGAAGC
GCCGGAGGAGAACCAAGACAAGTAGGGCAGTGCTGTTTGCAAAGGAGATATGCATTCTCCTTAGCCTTAAGCTGCATCAT
CAGATTTTAGTTAATGAACTTTGTTCATGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAAACCTCTGCAAGTTC
GTGTCACTTGCATGTTGGGATTCTCAGAGCCATAAAACAAAAGGAAATTTTGAAGCCAATTAATTTCTGTTTC-GCATCA
GTTAATGGTTGGGCATGACAACGTGTCTTTGATTTAGTTCTGTTTCTACTGTATTTCTAGTTTGTTTCAGAACATGTCTT
TGAGAGGTCGACTGGTATTGGTATTGTTGCTTGAAATCCTT-GCTGTACTTGAGAGATCGATGTGAACAAAGCTCAGCGG
TTC-TTGTGCTGCTTACCTTGCAGGCTTTGCACAACGTGAGCTTCTGAGAACTGAGTTCAGCAACTTTGGTTACTTCAAG
ATGATGATGAGTTTTGCCGGGATGATGATTGGCTAGAATTTGAATTAGTTTAGCCTGGAGGAGGAAG---ATGAAGAGAA
AA------------------------------------------------------------------------------
----------------------------------------------------CACAATTATATGAGAACATTTGGTAAAA
CATCCATCAGTAAAACACACTGGCCTCATCTACTATCGTTCATTTCCTGGTCATTTTCCAACGTGA-------AAATGAA
CAAAATCTTGCGTAACAGCCAGCGCCTGCTCCTTTTCACCACTTTGTCTGTCTACATGAAACATTAGCACAGTTTCACAT
CATAAAAA-ATTCGGCACTTGTGTTGTGATAAATTTTAAGAAACAAAGTACGGCTATCAAATTTCACACAACACTCGTTG
GCCCATTCTGATAATTTGGAAATAA-------------------------------------------------------
--------------------------------------------
>chr2B_60
CGGCCGGCA----------------------------------------------------------G-CGCGTCGAGGT
GCTGCCCCTCTCCTCTCCCTCGCCCCCTTCCCCTTGGGGCTGCTCCGCCCCCTCTCTCTC--GGGCGTCC------CCAT
GGGTGGCTGACGGCGGCGGCGTTGGATGCCCTCTCTCCCTGCTCTGGTTCCCCTCCCCCTCTCTCCACCCTGATCTGATT
TTTCCTCTCTGAGCTGAAGCGCGAAGGAGGTCAGGGACGAGCGGCAGGCCGGCGACCAGCAACACCCCTCTCTTCCCCGT
TGCTGATTCCTCCCCAGGTACTGTAACCCTAGCTGTTCGATCTGTTTGGGCAGTAGATTCGCTGATTGTGTGCATGCTGA
TCTCAAGTGCTGCTTCTGTGTGATTTGTGTGTATGCGATGGCTCGTGTGCATGCCTTGTATGGCGTGCTTCCTTCTGATT
GGTTAGCTGCAGTTCGGAGGACAACATTAGTTCAGTTTTGTGCATGACATCTTAGAAGTTATTTT---------------
-----------------------------------------------TCTTCTTCTTTCATTTCAATTTTCTACTGTAGA
TGGACAGCAAGAGGAAGATGCTGGTTTAAGAGGCTGTGTCACATGTGCTTATTTCCATGTTTCTACTATAACTAGGCTCC
GCTAGAAGAATAAGTATGCAGG--TGCAGACTATCTGTAAAC-AAAAGTAGCCAA-------------------------
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>chr5D_387
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---------------------------------------------------------------------------GCTCG
GCTAGAACAATAAATATGCAGGGATGCAGACTATCTGTAAAGAAAAAGTAGCCAAATGGCCTAAATCAAAATATGCACTG
CTCAGTTCTTGATTTAGGCCGTTTGGTTTATATCAAATATATACACATACACCATATATACAAGAGTCTTCTGGTTATTC
AGTTCTTATACATTTTCCTTTGATTTCTTGGCTTGCTCCTCGATTCCATGTCAATCCCTAGCGGGATCTGACACTGCTGC
TGCTGCTGACTCAGATGGCTGAATAGTGGATCGATGCCTCTCATCTCTGTATCGTTCCAATTTTAGCGGATGTCCCCGAA
GGAACGATACCTCTCATCTAGTTACCACCCTTTGTATAGCCTGAGGTTACAGAGAGTAACTTGAAAATAGAAATAATAAC
TGCCCATGTAGAATCGCCCATGTAGCTGCTGAAGTCATATTTCTATGCCCGTCTGCATACAATGCTAACTTCTTTTTTAA
CCCAAGTGTTCTAGTGCCCAAAAATGACCACAATGAGTCGAGGATTTTAAAGTACTAGTACCATTTATAATCTCTCTGCA
ATCATGTGACCGAACCTTTT-TTTGGATGTGTTGCTCCTGCTATATTGCAAACTTGGAATAATTGTTATGATAGGTCCTA
CATTAATCATGGTGTATGCTTTCTTAAG----------------------------------------------------
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-GAAATCATGGCGAATGTTGATCATGATTTTGTAAGTAATATTTTTGAGA--------GGTGAATGCTGATCATGTTTTT
GTAACTTACGCGTATCTGTTGAGGAAATGGATGTTTCTTTCATGGTTAACATCTGGAAAGCCGAT---AATAGATATGTA
TTACTATTTCGTCCCTTTTGTCTGATGACCTTGCGTGCGATTACAGGTTGGAAGGATGAGGAAGGGACTACATCCTCAGA
TGCAGTGGATCTCATACGTGACGCAGAGCGGCAGGCTGATCAACATCATGATGACCAAGGTGAACCACACCGGCAAAGTG
TACCACATGAGGGCGAAGCGGCAGATGGCTCAGAGCCTGGGGCAGATCGCCAAGTTCAAACGCCGATACGAGCAGGACGC
GCCGGAGGAGAACCAAGACAAGTAGGGCATTGCTGTTTGCAAAGGAGATATACATTCTCCTTAGCCTTAAGTTGCATCGT
CAGATTTTAGTTAATGAACTTTATTCGTGGAATTTTGTTTCCATTCTCAGGGATAATGCTGTTTAAACCTCTGCAAGTTC
GTGTCACTTGCATGTTGGGATTCTCAGAGCCATAAAACAAAAGGAAATTTTGAACCCAATTAGTTTCTGTTTTGGCATCA
GTTAATGGTTGGGCATGACAACGTGTCTTTGATTTAGTTCTGTTTCTACTGTATTACTAGTTTGTTTCAGAACATGTCTT
TGAGAGATCAACTGGTATTGGTATCGTTGCTTGAAATCCTT-GCTGTAGTTGAGAGATCGATGTGAACAAAGCTTGGGGG
TTCTTTGTGCTGCTTAGCTTGCAGGCTTTGCACAACGTGAGCCTCTGAGGACCGAGTTCAACAGCTTTGGTTACTTCAAG
ATG---ATGAGTTTTGCCAGGATGGTGATTGGCTAAATTTTGATTTAGTTTAGCCTGGAGGAGGAAG---ATGAAGAGAA
GA------------------------------------------------------------------------------
----------------------------------------------------CACAATTATACGAGAACAATTGGTAAAA
CATCCATCAGTAAAACACGCTGGCCTCTTCTAATATCGTTCATTTCCTGTTCATTTTCGAACGTG--------AAATGAA
CAAAATCTTGCGTAACAGCCAGCACATGTTCATTTTCCCCACTTTATCTGTCTACATGAAACATTAGCACAATTTCACAT
CATAAAAACATTCGGCACTTGTGTTGTGATAAATTTTAAGAAACAAAGTACGGCTATCAAATTTCACACAACTATCGTTG
GCCCATTCTGATAGTTTGGAATTAACGCATCATAAACAATACACTTTGGCATGATTCAACATTGCACA-TTGCCAATTAG
GCATCTAAATGT---TATTTCAAAAGGCATCTAAATGTTCAACA
>SNPs
----------S--------S-SS-SSS----------S-S----------------------------------------
-----------------------------------S------------------------SS------------------
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---------S------------------------------------------------------------------S---
S------------------------------------------------S----------------SSSS-SS-------
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-----S----------------------------------S--S------------------------------------
----------S-SSSSSSSSSSSSSS-SSSSSSSSS--------------------------------------------
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--------------------------------------------------------S-S--S----S----SSSS-SSSS
SSSS-SS---------------S-------S------------S---S----------------------------S---
----------------S-----S---------SS--------S------------S------------------------
-----S--------------S------------S----------------------------------------------
-S------------------------S-----------------------------------------------------
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--------------------------S-----------------------------------------------------
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----------------------------S-S--------S--------------------------S-------------
-------------------------------------------------------------------S--------S---
-----------------------------S-----------------S--------------------------------
--------------------------S--S-----------S-----SS---S----------------------S----
-----------------------S-----------------------------------------------------S-S
-S--S--------------------SS--S-S----------S-S-------S-S------------------SS-----
-----------------S----S-------S-----------------S--S----S-----------------------
-----------------------------------------S------S-------------------------------
---------------------------------------S-------------S--------------------------
-----------------------------------------------------------------S-SSS---------S
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S--
S----------------S----S--------------------------S--------------S-SSSSSSS-------
---------------------S-------------------------------------------S--------------
-------S---------S-----------------------------------S------------S-------------
-------S-----------------S---------------S--------------------------S----S------
------------SSS------S----------------------
>forward_321
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-------------------------------------------------------------GCACCCCTCTCTTCTTCGT
C-------------------------------------------------------------------------------
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>reverse_2615
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------------------------------------------------------TGCTTCAACTTACCGTGCCT------
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