>input_sequence_86883
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ATGGCGGACTGGGGCCCGGTGATCGTCGCGACAGTGCTGTTCGTGCTGCTGACGCCGGGGTTGCTGT
GCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGGAGCATGCACACCAGCGGCCTCTCCATCCTCATCCACGCCGTC
CTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTACACCGGCTAG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr2D_1_TraesCS2D01G282500
ACCGGCATGCGAGAGTTGAAGGCCGGCGACCAATGGTGCAAAGTGCTACAACCGGGCATGGGTGTGCTGCAACCTCAGAT
GACGAAGGTGCAAATAGAAGTCGAGTGGTTTTTGACGGAGAGGACGGTGCTTGTGCCGGCGGCGGCACCGTTGCGAGGGC
ATCGACTGGCGATGCGCAGGTGGTGCTTCGAGGGCTATTGCTCCGCCCGTCCATAGCGGCACTCGGCGGTGTTCGCTAGG
GCTATCTGCCAGTGCACATCGTCTGATTTTTGGGGATCCAGCCTTTGGACGGGCGGAGCGACAGCCCTCGAAAGGCTGGA
TCTGACGATTTGAAGGTCGTGTCGTATCTAACGGGTGACATGCGACCGGCTGAGCGTTTGGGCCGGCCTGTCGGCGTCTA
AATTATGTGATGGAAATCTTCTTTTAAATACAAAATTTATGTTCAAACTTTCGCTCAAAATATAATAGAGCCTGCTAAAT
GCGACCAGAGGAAGTACTA--GACTAGCGAGTGATTTCGATCGGCATTCACCTGTTA----CACCTGCTAGGTCGGCGTC
GGTGCACC--------------------ACCGCTC----------------ATTCTTTTGTTTCTCGGCGGCCCGGACCC
ACAGGAGCTCCTTCTGGTTCCTTCCATCCACGCCCACGGCAAGGCGACA---------CAAAGGTTTCCTCGACTAGAAC
GGAACGTATCCTTTCCCCCTCCAGATGCACAAGAGAGTACGCCTCTACCTACTACCTATAGCCAATGTCGTGTGGGCCAC
AATACGTTCAGGACAACATTCGGCCCACATGTCACGGGCATATCAAGCAGCACGGGAATCTGAGCTGGCGGCCACCCACT
CTCCCCACTCTGCGAGCAAAGCTGGAGAGGCACACATTAATGCGTGACCTCCCCCGTCTCCGCCGCACTGCACACACACA
CACATCCCGGAGAGTTCCCAG--AAAAAAATCCAGAGGCTCGCTCAAGATTTGGTTTTTTTTGACAGAACAGATCAGAGA
GAGGGGAGGGGAGATGGCGGACTGGGGCCCGGTGATCGTCGCGACAGTGCTGTTCGTGCTGCTGACGCCGGGGTTGCTGT
GCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGGAGCATGCACACCAGCGGCCTCTCCATCCTCATCCACGCCGTC
CTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTACACCGGCTAGCCGGGCGCGCCCGCC--
--GCCAGCACCGATCGGTTCGAGCTCCTCCGCTGGATTTG-GTTTAAGATCTGTCTGTCTGCAGAGCTATCAGCTATGGT
TGTGGGGTCTTGTAATCCGATTTGGTGGTATGGTTTT--AAAC-TTGGTTTCGTTGTAACCGGTGTT-AAAGATCGATGC
TGCATACGGCGTGTTGCGGTAT---ACTCGTATATGTACGCTGGATTGAAAATTCGAGTACGGTTTGATTGGTCGTTTG-
-TTTTTGCCTTCGAGTCGTTCAGGTGTTTGGTTGAGGATTCGATTACGCTTCAAAGAGGAGTTTGAGAATATATAAAACG
TTGCCTCAACTTTAAGCACCTCGTCTGGGTGGTGTAGTTGGTTATCACGTTAGTCTCACACACTAAAGGTCCCCAGTTCG
AACCTGGGCTCAGACAACTTTTTTTCCAATATCA-------GTTTTTGGAAACACATTTAGGCCGCGTTTGATTTGCCTA
GGATTTTCTG-------TAGATCCTCTGGAAATTTTCATGCGATGTC-GTTTGATTTACAGGATTGTGTTCCACCGAAAC
CAATCGTAAATAAAATCCATAGTTCAGTTTCACAGAAAAAGGCAATGAGGACTTCATGGAAAAATCCTAGCGGGAAGAAA
ATGCGCACGCATGAGTTCCTATGTTTTTTTATACTAGAATCAAATAGCAGTTATGTGAGAATTCCTATGTTTTGCTATCG
GTGGGATTTCACTTGACACGGCATCCTATCTGTAGTTCATTTTTCCTGTTTCTACACTTATACCAATCCTGTAAAACAAA
TGAGGCCTTAGGCTTCTTTTGGTTCATAGGATAGGATTATCGTAGGAATAGGAATTTTGTAGAAAATGAGATAACATGTA
TCTCAAATCAAATCCTATGAGTAGGAATAGGAAACGAGATGTCATTTGGTTGACACCAAAGAATTTTTCCATTGCGTCTA
GGCTCATTTTTATTTTCCCATGAAATATGGAGAAATATGGAGGATAGGAACC
>chr2A_417
TCTTTTTTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AATACAAAATTTATGTTTAAACTTTCGCTCAAAATATAAGGGAGCCTGGTAAAT
GCGAACAGAGGAAGTAGTGGCGACTAGCGAGTGATTTCGATCGGCATTCACCTGTTAGTTACACCTGCTGCGTCGGCGTC
GGTGCACGGTGCACCGGATATGTCCTCCATTGGCGTACCCTCGAAAAAAAAATTCTTTTGTTTTTCGGCGGCCCGGACCC
ACGGGAGCTCCTTCTGGTTCCTTCCATCCACGCCCACGGCAACGCGACGCAACGCACGCAAAGGTTTCCTCGACTAGAAC
GGAACGTATCCTTTTCCCCACCCGATGCACAAGAGAGTACGCCTCTACC---------TAGCCAATGTCGTGTGGGCCCC
AAGACGTTCAGGACAACCTTCGGCCCACATGTCACGGGCATATCAAGCGGCATCGGAAGCTGAGCTGGCGGCCACCCACT
CCCCCCACTCTGCGAGCAAAGCTGGAGAGGCACACATTAATGCGTGACCTCCCCCGTCTCCGCCGCACTGCACACACACA
----TCCCGGAGAGTTCCCAG--AAAAAATTCCAGAGGCTCGCTCAAGATTTGGGGTTTTTAGACAGAACAGATCAGAGA
GAGGAGAGGGGAGATGGCGGACTGGGGCCCGGTGATCGTCGCGACGGTGCTGTTCGTGCTGCTGACGCCGGGGCTGCTGT
GCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGCAGCATGCACACCAGCGGCCTCTCCATCCTCATCCACGCCGTC
CTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTACACCGGCTAGCCGGGCGCGCCCGCCCG
CCGCCAGCATCGATCGGTTCGAGCTCCTCCGCTGGATTT-AGTTTAAGATCTGTCTGTCTGCAGAGCTATCAGCGATGGT
TGTGGGGTCTTGTAATCCGATTTGGTGGTACGGTTTT--AAACTTTGGTTTCATTGTAACCGGTGTT-AAAGATCGATGC
TGCGTACGGCGTGTTGCGTTATTATACTCGTATATATAGGCTCGATTGAAAATTCGAGTACGGTTCGATTGGTCGTTTG-
-TTTT-GCCTTCGAGTTGTTCAGGCG-TTGGTTGAGGTTCCGATTACACTTCAAAGAAGAATATATAAAAAAATTGCCTC
AGCG-------GTTAGCACCTCGTCTGGGTGGTGTAGTTGGTTATCACGTTAGTCTCACACACTAAAGGTCCCCAGTTCG
AACCTGGGCTCAGACAAATTTTTTTCCAATTTTA-------ATTTTTGAAAACACATTCAGGCCTTGCTTGATTTGCATA
GGGTTTTCTGTAGGATTTAGATCCTCTGGAAATTTTCCTGCGGTGTCTGTTTGATTTACAGGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr2B_468
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GAGCCTGATGAAT
GCGAACAGAGAAAGTAGTGGCGACTAGCGAGTGATTTCGATCGGCATTCACCTGTTA----CACCTGCTGCGTCGGCGTC
GGCGT-CGGTGCACCGGATATGTCCTCCACCGCTC----------------ATTCTTTTGTTTTTCGGCGGCCCGGACCC
ACGGAAGCTCCTTCTGGTTCCTTCCATCCACGCCCACGGCAACGCGACGCAACGCACGCAAAGGTTTCCTCGACTAGAAC
GGAACGTATACTTTCCCCCTCCCGATGCACAAGAGAGTAC--------C---------TAGCCAATGTCGTGTGGGCCCC
AATACGTTCAGGACAACATTCGGCCCACATGTCACGGGCATATCAAGCGGCATGGGGAGCTGAGCTGGCGGCCACCCACT
CCCCCCACTCTGCGAGCAAAGCTGGAGAGGCACACATTAATGCGTGACCTCCCCCGTCTCCGCCGCACTGCACACACACA
----TCCTGGAGAGTTCCCAGAAAAAAAAATCCAGAGTCTCGCTCAAAATTTGGGGGTTTTAGACAGAACAGATCAGAGA
GAGGAGA-GGGAGATGGCGGACTGGGGCCCGGTGATCGTCGCGACGGTGCTGTTCGTGCTGCTGACGCCGGGGCTACTGT
GCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGCAGCATGCACACCAGCGGCCTCTCCATCCTCATCCACGCCGTC
CTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTACACCGGCTAGCCGGGCGCGCCCG----
CCGCCAGCATCGATCGGTTCGAGCTCCTCCGCTGGATTTTAGTTTAAGATCTGTCTGTCTGCAGAGCTATCAGCTATGGT
TGTGGGGTCTTGTAATCCAATTTGGTGGTATGTTTTTCTAAAC-TTGGTTTCATTGCAACCGGTGTTAAAAGATCGATGC
TGCATACGGCGTGTTGCGTTAT---GCTCGTATATATACGCTCGATTGAAAATTCGAGTACGGTTCGATTCGTCGTTTGT
TTTTT-GCCTTCGAGTTGTTCTGGTG-TTGGCTGAGGATTTGATTACGCTTCAAATAGGAATTTAAGAATATATTTAATA
TTGACTCGATTGTTAGCACCTTGTCTGGGTGGTGTAGTTGGTTATCACGTTAGTCTCACACACTAAAGGTCCCCAGTTCG
AACCTGGGCTCAGACAACTGTTTTTTCCCCTAGTTTAATGTATTTTTGGAAACACATTTAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>SNPs
S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S---------------------SS-------S-----
----S-----------S-S--------------------------------------------------SS---------
-------S-------------------------------------------------------S----------------
--S---------------------------------------S-----S-------------------------------
----------------------S--------------------------SSSSSSSSS--------------------S-
------------------------------------------------S---S-----S---------------------
-S------------------------------------------------------------------------------
SSSS--------------------------------------------------SS-----S------------------
----S----------------------------------------S---------------------------S------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
---------S-----------------------------S----------------------------------------
----------------------------------------------------S---------------------------
------------------S----------------S------S----------------------S--------------
-----S----------S---------S---------------------------------S---S---------SS--SS
---S---S-S-S-S------------------------------------------------------------------
------------------------------S-S--------S----------------------SS-S---------S--
--S----------------------------------S----S--------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_129
--------------------------------------------------------------------------------
-----------------------------TTTTGACGGAGAGGACGGTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_1907
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CTAGCGGGAAGAAA
ATGCGC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
