>input_sequence_86880
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-------------------ATGGACAAGGACAACTTTGGCAGGCTCCGGTGGACATGCCCACACTGCAAGC-TTCAGGGT
TTTTATCTTCAGGAGTTCATCACGGCTCATCTTGCTAGCCACGCCCCGCAAGACGGAGCTGGAGGCGGCGCGCAGGGCGG
CGGAGGAGGCTCAGGCGGTGGAGGCTCAGTCGGAGGAGGAGGTG---------------GAGGAGGAAGTGGAGTAAGTG
CCTAG---------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G087100
ATATGCTACTTTGAAGAGAGTAAAAGTGTGGCTAAATCCAGGGGAACAACAAATCAAAAAACTAACATCAATCAAGATTC
AAAAATTCCAAATTTTTGTGACATCAGACATGATCAAATGTTTTAGGTGCAAAATTCCGTACACAACTAACATGCGAGGA
GCTCTCAACC--AAAAAAACAAAATGATTGCTCAAAGTTTTGTACACCCTTTTGAGCAGTGATTTTTTTGGTTGAGGGCT
CCTTGAATGTTATTTGTGGATAAAATTTTGCAAAAACCTAAAACATTTGACCATCTTTGATGTTGCAAAATTTTGCTTCA
TACTATTTTTCTCGATTTAGTGTTCACACCCGGGTGTAGGGTACACCCGGGAGTAAAAAAGAACTAATTATTCTGCCTAT
GTCGTCTTTTGAGCACGGTGACATACATGTCCGGCCTATTTGTGGTACAGAAGGGGGTCGATTTAGGCTTGGCACTGAAA
ATGCAAAAATGGATCATGCACTGTTGCTGCGACAATTAGCCAGTGTGATACTTATGGATGTGCATTTTAGCCTATCAAAA
CATCTTATATTTTGGAATGGAGGTAGTAGATGGTATATTGTGAACCGAGTCTATCGTTTTATGTTTGAGCTTGAGTCTTT
CTGTTTTAGTTGTGCATACATGACAGCGAGAGGGAATTCACAATTTAAGTTTTCGTTGTACTCATGCACGAGGTACGTAC
TATGCACCGAGACAAAACTAAAACTCACACTTTCTGTTTTCGCTGTACTCATGCATGAGGTACTGAGAGAAAAGTCGCCT
CACCAAGAAACCGTTTTGT-------------------------------------------------------------
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------------------------------------------------------------------ACGTAGCACTTGCA
TGCACATGGGATGTCTACTAAACTTTGAACAAGTCCAGTCGAGGCACCGATTACTTCAGTTTCCTACATGATATTTGCAT
GGGGCGCGTGGGACTCTGGCTTGT----------CACACCCGTTCACCAACTAAGGCTACCAAAACTTGTTTGCAAGACC
GAGATGGTGTGAGCTCAGTATGGACAAGGACAACTTTGGCAGGCTCCGGTGGACATGCCCACACTGCAAGC-TTCAGGGT
TTTTATCTTCAGGAGTTCATCACGGCTCATCTTGCTAGCCACGCCCCGCAAGACGGAGCTGGAGGCGGCGCGCAGGGCGG
CGGAGGAGGCTCAGGCGGTGGAGGCTCAGTCGGAGGAGGAGGTG---------------GAGGAGGAAGTGGAGTAAGTG
CCTAGCTTATCTAGGTCCCGGGTGGGCATCCTGGATTCCAGTTGTGTGCGACGTGCGAAGTTGGGTCTTCATCTAGTAGT
CTAGCTTCCTTTTGTTCTGTCGTTTGCAAATGCGAAGTGCTGCTGTTGCATGTGTCGCTGCGGCGGATTCTTCGTATTGG
CAATGTATCGCGTGCGTTATTGTTTCATTTTCTTGGTCTTTAGTTAGCGTGCTGGTCATGTAGTCATTTACTCCTTGGTA
TGTAACTTCTCCGTCATTGGATTGCCATTATGTTTGTTTCCGAGAACTTGTACTCTCTTCTCCCTATTTTACGCTTTGGT
TGTACTAGCAAATATGCCCATGCATCGCATCGAGTGAAAAACTATTATCCCCGCATGGCCGCATCCTCCTACTAAATGAA
CACGCTGTTCAAAACTCAAGAATCGGGCTATGGAGATGTGGTAGAGATAAGGAAAAAAAAGCTTCGAATTATATGCTAAA
TTGATATAAGGACTTTTAAAAGGCAATTGAGGCTATTAGGGCTACGATGTTAACATGGCCTAATTTCATATAAGCATCCA
CCGTTTTTTTTTAAGAAAAGGAGGATTACCCCCGGTCTCTGCATCTAGGCAGTACATGCAGCTATTTTATTAATTATTTA
CAAAGACTTTAGTCATATAAGCATCCACCGTAGTCATTTTTGGTCTTATAAAGGCAGCCTCCATACACTGCAAGCATCAG
AGTCATTGTCGCCAAGTTTGAGGTCCCTCTAGCCTTAAAGTACGTCTCCAACAAATGAACAAATTAAAATTAATTGGTCT
CACATATGAGAAAGCGTTGTAGCTGGTGATGTTTATTAATGGATCGATTAGAAGCAAGCCGAACCAAGAAAATCAAACAA
CACAAAATGATGAGACAAAAAAGCCAAATCATTGTTTGAAAGTTAATTAAAATAAAAAATTAAGAACAAACCAGTAGTTA
AGAAAGAATTGGAATAATGCAATTAAGGGTTCGTCTCATGTAAAC
>chr2A_1
ATACGCTACTTTGAAGAGAGTAAAAGTGTGGCTAAATCCAGGGGAACAACAAATCAAAAAACTAACATCAATCAAGATTC
AAAAATTCCAAAATTTTGTGACATCAGACATGATCAAATGTTTTAGGTGCAAAATTCCGTACACAACTAACATGTGAGGA
GCTCTCAACCAAAAAAAAACAAAATGATTGCTCAAAGTTTTGTACACCCTTTTGAGCAGTGATTTTTTTGGTTGAGGGCC
CCTTGAATGTTATTTGTGGATAAAATTTTGCAAAAACCTAAAACATTTGACCATCTTTGATGTTGCAAAATTTTGCTTCA
TACTATTTTTCTCGATTTAGTGTTCACACCTGGGTGTAGGGTACACCCGGGAGTAAAAAAGAACTAATTATTCTGCCTAT
GTCGTCTTTTGAGCACGGTGACATACATGTCCGGCCTATTTGTGGTACAGAAGGGGGTCGATTTAGGCTTGGC-----AA
ATGCAAAAATGGATCATGCACTGTTGCTGCGACAATTAGCCAGTGTGATATTTATGGATGTACATTTTAGCCTATCAAAA
CATCTTATATTTTGGAATTGAGGTAGTAGATGGTATATTGTGAACCGAGTCTATCGTTTTATGTTTGAGCTTGAGTCTTT
CTGTTTTAGTTGTGCATACATGACAGCGAGAGGGAATTCACAATTTAAGTTTTCGTTGTACTCATGCACGAGGTACGTAC
TATGCACCGAGACAAAACTAAAACTCACACTTTCTGTTTTCGCTGTACTCATGCATGAGGTACTGAGAGAAAAGTCGCCT
CACCAAGAAACCGTTTTGTACGTAGCACTTGCATGCAAATGGGGTGTCCACTCTACTCATGCATGAGGTACCGAGAGAAA
AGTGGCCTGACCAAGAAACCGTTTTGTACGTAGCACTTGCATCGAAGTTCCTTTGAAAATAAGAGTGTTTATGTGGTTTG
TCCATAAACAAGTGATTTTAACCAAGGATAATTTGATAAAGCGTAATTGGACAGGACCTACTAGGTGTAGTTTCTGTGAT
CAGGATGAGACGATCAAACACATCTTTCTTGACTGCCCGTTGGTCAAGGTCCTTTGGCGGACGGTCCACATTGCTTTTAA
TATTACTCCACCAAATTCTGTCAACGCGTTATTTGGAACATGGCTTAATGGGATTGAGCCAGACTTAGCGAGACACATTC
GGGTTAGAGTTTGCGCTTTAATGTGGACTATCTGGAACTGCAGAAATGATTTGGTTTTTAACAGAACATCACGGTTTCAT
TTTTTGCAGGTTATCTTCCGAGCCACGGCACTGATCCATTCGTGGTCGCTACTCACTCCGATGGGGGCCAGGGAGCATTT
AGTTACTGGATCTATCCGCTGGAAGATGGTAGCTCGGGATATCTTCAACCGGTGTGGATGACGGTCATGCAATAGGATAG
GCAATTAGTTCACCTATCTTTCTATTAGCCAGCCGGTTGTTGCATCTGTTCTTGGCTAGTTTGTGTTTCTAGCCCTTTTT
GGTTAATAAGAGGGTCGTATGCATCAGTCTGATGCAGAGGCCGGAGAGACCCCCCGTTTCGAAAAAACGTAGCACTTGCA
TGCACATGGGATGTCTACTAAACTTTGAACAAGTCCAGTCGAGGCACCGATTAATTCAGTT-CCTACATGATATTTGCAT
GGGGCGCGTGGGACTCCGGCTTGTCTATAAAACCCACACCCGTTCACCAACTAAGGCTACCAAAACTTGTTTGCAAGACC
GAGATAGTGTGAGCTCAGTATGGACAAGGACAACTTTGGCAGGCTCCGGTGGACATGCCCACACTGCAAGCTTTCAGGGT
TTTTATCTTCAGGAGTTTATCACGGCTCATCTTGCTAGCCACGCCCCGCAAGACGGAGCTGGAGGCAGCGCGCAGGGCGG
CGGCGGAGGCTCAGGCGGTGGAGGCTCAGTCGGAGGAGGAGGTGGAGGAGGCTCAGTTGGAGGAGGAAGTGGAGTAAGTG
CCTAGCTTATCTAGGTCCCGGGTGGGCATCCTGGATTCCAGTTGTGTGCGACGTGCGAAGTTGGGTCTTCATCTAGTAGT
CTAGTTTCCTCCTGTTCTGTCGTTTGCAAATGCGAAGTGCTGCTGTTGCATGTGTCGCTGCGGCGGATTCTTCGTATTGG
CAATGTATCGCGTGTGTCATTGTTCCATTTTCTTGGTCTTTAGTTAGCGTGCTGGTCATGTAGTCATTTACTCCTTGGTA
TGTAACTTCTCCGTCATTGGATTGCCATTATGTTTGTTTCCGAGAACTTGTATTCTCTTCTCCCTATTTTACGTTTTGGT
TGTACTAGCAAATATGCCCATGCGTCGCATCGAGTGAAAAACTATTATCCCCGCATGGCCGCATCCTCCTACTAAATGAA
CACGTTGTTCAAAACTCAAGAATCGGGCTATGGAGATGTGGTAGAGATAAGGAAAAAAAAGCTTCGAATTATATGCTAAA
TTGATATAAGAACTTTTAAAAGGCAATTGAGGCTATTAGGGCTACGATGTTAACATGGCCTAATTTCATATAAGCATCCA
CCGTTTTTTT--AAGAAAAAAAGGATTAT-CCCGGTCTCTGCATCTAGGCGATACATGCAGCTATTTTATTAATTATTCA
CAAAGACTTTAGTCATATAAGCACCCACCATAGTCATTTTTGGTCTTATAAAGGCAGCCTCCATACACTGCAAGCATCAG
AGTCGTTGTCGCCAAGTTTGAGGTCCCTCTAGCCTTAAAGTATGTCTCCAACAAATGAACAAATTAAAATTAATTGGTCT
CACATATGAGATAGCGTTGTAGCTGGTGATGTTTATTAATGGATCGATTAGAAGCAAGCCGAACCAAGAAAATCAAACAA
CACAAAATGATGAGACAAAAAAGCCAAATCATTGTTTGAAAGTTAATTAAAATAAAAAATTAAGAATAAACCAGTACTTA
AGAAAGAATTGCAATAATGCAATTAAGGGTTCGTCTCATGTAAAC
>SNPs
---S----------------------------------------------------------------------------
------------S-------------------------------------------------------------S-----
-------------------------------------------------------------------------------S
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------------------------------S-------------------------------------------------
-------------------------------------------------------------------------SSSSS--
--------------------------------------------------S----------S------------------
------------------S-------------------------------------------------------------
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-----------------------------------------------------S-------S------------------
----------------S---------------------------------------------------------------
-----S--------------------------------------------------------------------------
-----------------S------------------------------------------------S-------------
---S----------------------------------------------------------------------------
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----S-----SS--------------------------------------------------------------------
--------------S--S------S-------------------------------------------------------
----------------------------------------------------S--------------------S------
-----------------------S--------------------------------------------------------
----S---------------------------------------------------------------------------
----------S---------------------------------------------------------------------
----------SS-------SS-------SS--------------------SS--------------------------S-
-----------------------S-----S--------------------------------------------------
----S-------------------------------------S-------------------------------------
-----------S--------------------------------------------------------------------
------------------------------------------------------------------S---------S---
-----------S---------------------------------
>forward_474
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------------------------------------------------------GGGTCGATTTAGGCTTGGCA------
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>reverse_2581
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--------------------GAGGATTACCCCCGGTCTCT----------------------------------------
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