>input_sequence_86873
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATGGCGGACTGGGGCCCGGTGATCGTCGCGACGGTGCTGT
TCGTGCTGCTGACGCCGGGGCTGCTGTGCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGCAGCATGCACACCAGC
GGCCTCTCCATCCTCATCCACGCCGTCCTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTA
CACCGGCTAG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>chr2A_1_TraesCS2A01G283600
GTTTACTAGACTGTTTCATGCACCACTACTCTTCCATCAGATGAAGGATGTTAGGGTGGCTTCTTTACATCCACACTTCA
TACTTTGAGAAGCGATAACAATATAAACTTTTTACTAATGTTTATCAGAACTGTATATCGGAAATGGCACGCACTATCAT
ACAGAGCAGGTTTTACTATATTTTTCGTCCGTTGCGACGTACGGACATTTATACTACTCCCTCCGTTCCTAAATACTTAT
TTTTTTATGCATTTCAACAAGTGACTACATACGGAGCAACATAAGTGAATCTATACTCTAAAACATGTTTACATACATCC
GTATGTAGTAGTTATTTGAAATGTCTACAAAGACAAATATTTAGGAACGGAGGGAGTAGTCTTTTTTTAATACAAAATTT
ATGTTTAAACTTTCGCTCAAAATATAAGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GAGCCTGGTAAATGCGAACAGAGGAAGTAGTGGCGACTAGCGAGTGATTTCGATCGGCATTCACCT
GTTAGTTACACCTGCTGCGTCGGCGTCGGTGCACGGTGCACCGGATATGTCCTCCATTGGCGTACCCTCGAAAAAAAAAT
TCTTTTGTTTTTCGGCGGCCCGGACCCACGGGAGCTCCTTCTGGTTCCTTCCATCCACGCCCACGGCAACGCGACGCAAC
GCACGCAAAGGTTTCCTCGACTAGAACGGAACGTATCCTTTTCCCCACCCGATGCACAAGAGAGTACGCCTCTACC----
-----TAGCCAATGTCGTGTGGGCCCCAAGACGTTCAGGACAACCTTCGGCCCACATGTCACGGGCATATCAAGCGGCAT
CGGAAGCTGAGCTGGCGGCCACCCACTCCCCCCACTCTGCGAGCAAAGCTGGAGAGGCACACATTAATGCGTGACCTCCC
CCGTCTCCGCCGCACTGCACACACACA----TCCCGGAGAGTTCCCAG--AAAAAATTCCAGAGGCTCGCTCAAGATTTG
GGGTTTTTAGACAGAACAGATCAGAGAGAGGAGAGGGGAGATGGCGGACTGGGGCCCGGTGATCGTCGCGACGGTGCTGT
TCGTGCTGCTGACGCCGGGGCTGCTGTGCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGCAGCATGCACACCAGC
GGCCTCTCCATCCTCATCCACGCCGTCCTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTA
CACCGGCTAGCCGGGCGCGCCCGCCCGCCGCCAGCATCGATCGGTTCGAGCTCCTCCGCTGGATTT-AGTTTAAGATCTG
TCTGTCTGCAGAGCTATCAGCGATGGTTGTGGGGTCTTGTAATCCGATTTGGTGGTACGGTTTT--AAACTTTGGTTTCA
TTGTAACCGGTGTT-AAAGATCGATGCTGCGTACGGCGTGTTGCGTTATTATACTCGTATATATAGGCTCGATTGAAAAT
TCGAGTACGGTTCGATTGGTCGTTTG--TTTT-GCCTTCGAGTTGTTCAGGCG-TTGGTTGAGGTTCCGATTACACTTCA
AAGAAGAATATATAAAAAAATTGCCTCAGCG-------GTTAGCACCTCGTCTGGGTGGTGTAGTTGGTTATCACGTTAG
TCTCACACACTAAAGGTCCCCAGTTCGAACCTGGGCTCAGACAAATTTTTTTCCAATTTTA-------ATTTTTGAAAAC
ACATTCAGGCCTTGCTTGATTTGCATAGGGTTTTCTGTAGGATTTAGATCCTCTGGAAATTTTCCTGCGGTGTCTGTTTG
ATTTACAGGA----------------------------------------------------------------------
------------------------------CGCAGGCATAAGTTCCTGTGGTTTTCCTATACTACAATCAAATAGCAGTT
GTGTGAGAATTCCTCTGTTTTGCTATCCGTTGAATTTCGCTGGACAAGGCATTCTATTCCTCTAG---TTTTCCTGTTCC
TACACTT-TACCTATCCTGTAAAACAAATGAGGCCTTAG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TTTTTCTTTAAGAGAAAGCCTCTCGATATTTTATTTCTCAGCCA
ATAAAATTAAATGAGTCTCATAGGAGTAGCTTACCAAAGATCTCAATCTCTCCATTTCATTCATTGATTAGCTCATGAGA
GTTGGACGTGATTGTTACACGAGTGCAACCCAACTTCTCGACGAGCTCCAGTCCTTAGCAAAGCAAACGCCTCCGCCGAG
GTAGCGTTAAAGACAAAATTAAAGCGACATGCCATACGGATGAGGATTTGTGGTTCTCGGGTGCCACACACCCCTATATG
GAAAATAGCACTA
>chr2B_380
TCTTCTTCTA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AATACAAGATTT
ATGTTCAAACTTTCACTCAAAATATAAAGGAGTCCGGTAAATTCAAACAAAGGAAGTAGTGGCGACTAGCGAGTGATTTC
AATCGGCATTCACGTGTTATCGCCTAAATTGTGTGGTGGAAATCTTCTTTTAAATGCAAAATTTATGTTCAAATTTTCAC
TCCAAATATAAGACTACCTATAGTGAAAGTAACATAGATGGTAACATTACACATATCTAAATAAAATAGATGATGTGACA
AGCAGTTAATGAAAAAAAAGGCGTGTAGTAACATAGCTAGTTACTAATACTATGAGTAACATCATACATACTAAGGGTTG
AATCTATAACCTAATAAATAAAGTGTTGCATAACAACACACGTCCCCATTGTAGAGGTGATAATATAGACTAGTAACATA
TGCATGTTAGTAGTCTAAGGCTGGTATAGTGGGGAGTAACTTAGACTAGTAATTACTACCTCTATAATGCATAATACTCC
CTCTCTCTCAGTTTACAGGACGTGTGCGTATCCCTAGGTCGTCAATTTGACCAACTTAATACAAGTCATTTATTACAAAA
AATATACCAATATAAAATTCATAAGTTCTATTTTCAAACCGTATAATTTTTGTGTTATATAGTTTATATTAGGGTGATAA
AATTGACAACCTAGGTATACGCGCAGGACTTTAAACTGAGACGGGGAAGTATCATAGATGGTCTCATTTATTGTCATGCA
TGACACGTACTAGCATCACATTTATTATGTTACAGTATCTACCTATATTACTATAACCATCTCTCTTTTCTTAAATTGCC
TGCCACATAAGCATGTTTGCGAGTCTCAAATATATGATACTACTTATGTTACCTCACTATGGCCAGCCTAACTTACTATT
CACTATGGCTAAGCGAGCCTGATGAATGCGAACAGAGAAAGTAGTGGCGACTAGCGAGTGATTTCGATCGGCATTCACCT
GTTA----CACCTGCTGCGTCGGCGTCGGCGT-CGGTGCACCGGATATGTCCTCCACCGCTC----------------AT
TCTTTTGTTTTTCGGCGGCCCGGACCCACGGAAGCTCCTTCTGGTTCCTTCCATCCACGCCCACGGCAACGCGACGCAAC
GCACGCAAAGGTTTCCTCGACTAGAACGGAACGTATACTTTCCCCCTCCCGATGCACAAGAGAGTAC--------C----
-----TAGCCAATGTCGTGTGGGCCCCAATACGTTCAGGACAACATTCGGCCCACATGTCACGGGCATATCAAGCGGCAT
GGGGAGCTGAGCTGGCGGCCACCCACTCCCCCCACTCTGCGAGCAAAGCTGGAGAGGCACACATTAATGCGTGACCTCCC
CCGTCTCCGCCGCACTGCACACACACA----TCCTGGAGAGTTCCCAGAAAAAAAAATCCAGAGTCTCGCTCAAAATTTG
GGGGTTTTAGACAGAACAGATCAGAGAGAGGAGA-GGGAGATGGCGGACTGGGGCCCGGTGATCGTCGCGACGGTGCTGT
TCGTGCTGCTGACGCCGGGGCTACTGTGCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGCAGCATGCACACCAGC
GGCCTCTCCATCCTCATCCACGCCGTCCTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTA
CACCGGCTAGCCGGGCGCGCCCG----CCGCCAGCATCGATCGGTTCGAGCTCCTCCGCTGGATTTTAGTTTAAGATCTG
TCTGTCTGCAGAGCTATCAGCTATGGTTGTGGGGTCTTGTAATCCAATTTGGTGGTATGTTTTTCTAAAC-TTGGTTTCA
TTGCAACCGGTGTTAAAAGATCGATGCTGCATACGGCGTGTTGCGTTAT---GCTCGTATATATACGCTCGATTGAAAAT
TCGAGTACGGTTCGATTCGTCGTTTGTTTTTT-GCCTTCGAGTTGTTCTGGTG-TTGGCTGAGGATTTGATTACGCTTCA
AATAGGAATTTAAGAATATATTTAATATTGACTCGATTGTTAGCACCTTGTCTGGGTGGTGTAGTTGGTTATCACGTTAG
TCTCACACACTAAAGGTCCCCAGTTCGAACCTGGGCTCAGACAACTGTTTTTTCCCCTAGTTTAATGTATTTTTGGAAAC
ACATTTAG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>chr2D_380
TCTTCTTTTA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AATACAAAATTT
ATGTTCAAACTTTCGCTCAAAATATAATA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GAGCCTGCTAAATGCGACCAGAGGAAGTACTA--GACTAGCGAGTGATTTCGATCGGCATTCACCT
GTTA----CACCTGCTAGGTCGGCGTCGGTGCACC--------------------ACCGCTC----------------AT
TCTTTTGTTTCTCGGCGGCCCGGACCCACAGGAGCTCCTTCTGGTTCCTTCCATCCACGCCCACGGCAAGGCGACA----
-----CAAAGGTTTCCTCGACTAGAACGGAACGTATCCTTTCCCCCTCCAGATGCACAAGAGAGTACGCCTCTACCTACT
ACCTATAGCCAATGTCGTGTGGGCCACAATACGTTCAGGACAACATTCGGCCCACATGTCACGGGCATATCAAGCAGCAC
GGGAATCTGAGCTGGCGGCCACCCACTCTCCCCACTCTGCGAGCAAAGCTGGAGAGGCACACATTAATGCGTGACCTCCC
CCGTCTCCGCCGCACTGCACACACACACACATCCCGGAGAGTTCCCAG--AAAAAAATCCAGAGGCTCGCTCAAGATTTG
GTTTTTTTTGACAGAACAGATCAGAGAGAGGGGAGGGGAGATGGCGGACTGGGGCCCGGTGATCGTCGCGACAGTGCTGT
TCGTGCTGCTGACGCCGGGGTTGCTGTGCACGCTGCCGGGGCGCGGGCGGGTGGCGGAGTTCGGGAGCATGCACACCAGC
GGCCTCTCCATCCTCATCCACGCCGTCCTCTACTTCGCGCTCGTCACCATCTTCCTCATCGCCGTCGGCGTCCACGTCTA
CACCGGCTAGCCGGGCGCGCCCG----CCGCCAGCACCGATCGGTTCGAGCTCCTCCGCTGGATTTG-GTTTAAGATCTG
TCTGTCTGCAGAGCTATCAGCTATGGTTGTGGGGTCTTGTAATCCGATTTGGTGGTATGGTTTT--AAAC-TTGGTTTCG
TTGTAACCGGTGTT-AAAGATCGATGCTGCATACGGCGTGTTGCGGTAT---ACTCGTATATGTACGCTGGATTGAAAAT
TCGAGTACGGTTTGATTGGTCGTTTG--TTTTTGCCTTCGAGTCGTTCAGGTGTTTGGTTGAGGATTCGATTACGCTTCA
AAGAGGAGTTTGAGAATATATAAAACGTTGCCTCAACTTTAAGCACCTCGTCTGGGTGGTGTAGTTGGTTATCACGTTAG
TCTCACACACTAAAGGTCCCCAGTTCGAACCTGGGCTCAGACAACTTTTTTTCCAATATCA-------GTTTTTGGAAAC
ACATTTAGGCCGCGTTTGATTTGCCTAGGATTTTCTG-------TAGATCCTCTGGAAATTTTCATGCGATGTC-GTTTG
ATTTACAGGATTGTGTTCCACCGAAACCAATCGTAAATAAAATCCATAGTTCAGTTTCACAGAAAAAGGCAATGAGGACT
TCATGGAAAAATCCTAGCGGGAAGAAAATGCGCACGCATGAGTTCCTATGTTTTTT-TATACTAGAATCAAATAGCAGTT
ATGTGAGAATTCCTATGTTTTGCTATCGGTGGGATTTCACTTGACACGGCATCCTATCTGTAGTTCATTTTTCCTGTTTC
TACACTTATACCAATCCTGTAAAACAAATGAGGCCTTAGGCTTCTTTTGGTTCATAGGATAGGATTATCGTAGGAATAGG
AATTTTGTAGAAAATGAGATAACATGTATCTCAAATCAAATCCTATGAGTAGGAATAGGAAACGAGATGTCATTTGGTTG
ACACCAAAGAATTTTTCCATTGCGTCTAGGCTCATTTTTATTTTCCCATGAAATATGGAGAAATATGGAGGATAGGAACC
AATCCTATGTAGAAATAGGAATCCATTCCTATGAACCAAAGGGCTCTAAAGAAAAAAATCCTATAAGAATCTTATCCTCT
AAAATTCCTATGAAATTCCTCCAAAGGAGGCCTTAGTTTTTCTTCAAGAGAAAGCTTCTC-ATATTTTATTTCTCAGCCA
ATAAA-TTAAATGAGTCTCATAGGAGTAGCTTACAAAAGATCTCAATCT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>SNPs
SS--SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----S---------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----SSSS------------------------------------------------SS-SSSSSSSSSSSSSSSSSSS--
--------------------------------------------------------------------------------
-----------------------------------------S----S---------------------------------
-----------------------------S--------------S-----------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------SSSS-----------------------------------------------------
---------------------S-----------------------------------S------------S---------
------------------------------S------------------SSS-------------S--------------
---------------------------------------------------S------------S-S-------S-----
----S----S--SS--S-S---SSS-SSSSS-------------------------------------------------
--------------------------------------------S--------------S---------------S----
-----S-----SS-S---------S----S-------SSSSSSS--------------------S----S----S-----
--------------------------------------------------------------------------------
----------------------------------S----S-------S--S----SS-------S---------------
S-------------S------------S--S-S-----S--S----S-----S----SSS-SSSS-------------S-
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S----------S----S-------------------
-----S----------------------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_155
--------------------------------------------------------------------------------
-------------------------------------------------------TATCGGAAATGGCACGCACT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_3398
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TCGACGAGCTCCAGTCCTTA-----------------------
--------------------------------------------------------------------------------
-------------
