>input_sequence_86872
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------------------------------------------ATGGCGGACTGGGCGCCGGTGGTGGTGGGGGTGGTGCT
CTTCGTGCTGCTGTCGCCGGGGCTGCTGTTCGAGATGCCGGGGTCGCACCGCCACGTCGACTTCGGCGGCCTCCACACCA
ACGGCAAGGCCATCTTCGTCCACACCCTGCTCTTCTTCGCCGCCTTCACCATCCTCACCCTCGCCCTCCACATCCACATC
TACGCCGGCTAG--------------------------------------------------------------------
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-----------------------------------
>chr1D_1_TraesCS1D01G411100
TGTGAATCATCTCTCTCCTCGTTTAACCCTGAGCCGCCCCCACACTCGTAAAAAATGCATGGCCGGCCGACTGTGCCGCT
AAGTCCTGTGAAAAACGGGGCACTTCCTTGTACCCCTCCACAGACAGCATATCAGGTGACACGGGCCTTCCCATGCTACC
GTGCTACGGGGTATTGGCAACCGTGCGAGCAGAATTGAAGGGACGCGATTGTATAAGCCCATAAAAGATGCTCCACTAGT
CAATTTTCCGTTGATCCATGGGACAAATTACTAATGGCACATACTCCTTCCGTTCGGAAATGTGAACACTTGTCGAAGAA
ATGAATGTATCTAGATGTATTTTAGTTCTAGATACATCCATTTTGGCGACAAGTATTTCCGAACAGAGGGAGTAAATAGG
TGAGGGGAAATAGATGAAACGAAAAAAACATAGGCTCCATGACCGCAGCAGCAATCACGGCCATGGAAACGGGTCTCCCT
TTTGTAATATATCACTTTTCTAGTGTGGCTTGTACTATGACATTAGCTAAGTGGATGCTTGCACACTGAGCATGTTGGTG
TGATACGAATCCAATGGCTGTCATTGCTCTGTAGTACTCCGTGGCACGCCGCACACGGTATGTTCCCCTTTCACACGGTA
CGTACACCTGACCTCCCCCTTTGCCACCCCCCACCATCTGGACGACACGCGCAGGTACACTGGGCACG------------
----------------------CACGGGTGTCGGCTGGGCGGCGCGCCTTGCATCCCACCCGATGCAAGGCATCGAATCG
CGCCAACCGTCCGCGTGACCGTGACGGCTGCTCCTTTGTTGCCTCCTA---------CTTTCCCCTGCTCCGCCGCTCGC
GGCCTCCTTTCTATATA---CTCCAGAATCCACTCCCCCACTCCACTCGCCCTCTCTCCCCCGAGTCTTCCCGAGTACTT
CTGTGTGTTCAT-------------------AGCCGTGAGATCAGATCAGATCGA------------CCAAAGAAGAAGA
AGAAGAAGAAGAAGCGAGGGAGAGCAGGC-----GGCGGAGGATGGCGGACTGGGCGCCGGTGGTGGTGGGGGTGGTGCT
CTTCGTGCTGCTGTCGCCGGGGCTGCTGTTCGAGATGCCGGGGTCGCACCGCCACGTCGACTTCGGCGGCCTCCACACCA
ACGGCAAGGCCATCTTCGTCCACACCCTGCTCTTCTTCGCCGCCTTCACCATCCTCACCCTCGCCCTCCACATCCACATC
TACGCCGGCTAGATAG-----------------ATCGATACACCATGTA--CTACCAGTAGC-----CTAGCTCCTGCCT
GTCTGCGTACTCTTCTCTTGCTCGGTCGATCGATCCCCTCCATGTAATCC----GCTTGTAATCCGTGCTTG----CCGG
ATCTCTCTGTACTGCCATCGGTTGAAGAAGAAGCGTG------------TTGAGGTGCTGCGCTATGCCTGTTCATTTAT
CTGATCTGATCC-----GATCTGATGAGATGTCTTTGTCACCGTGTGAGGATCGATCTGTTGCAACGAGTTGGTTAGCGA
CTGACTTCAGTAGTAGTGGCTTAGTCGCTGGGCATGCTACTGGAGTTGGTCG---TCATCATCCACTTTCCGATTAATTC
TTTTAACTTTCTGCGCAAATGAATATGTATTTC------GGCTCATCAAAGCCACTGA-ACTGAAGCATCTTTTGCCAGC
CGCCGGAGGGACGAACAAAGTCCGATCCACCTAGAAAGCTCGCTTTGGCCTTTGT----GAGCAGAGGGGATGGATGAAG
CAGAGATTCCTAATCCACATTGCTCCTGATCCATAGTGCTCATTGCTAACGGAAATTTGAAAAAGAAATCAAAACTCAAT
TTTTAAAGTTTCAAAAAAATCTGGTTCCTAGCCTAACTCTTAAATTTAGGGAGAGAATTCCTTATTGGGTCTGTCTAGGA
CACATCTAACCTGATGTCCACTATGTTTGTGGTCTATTTTTTTTTCAGCTTTTTTTTCTTATTACTGCCTTATTTGTGGG
ATCTTAGATGTGATATCCTTATAAAACATCTAGATGTGAATTAGACAAACTGTTCCTTATTTGGCCATTTCTTAAAATTT
GATTCTCTATTTGGTCCAAAATTAAAAAAATTCCTTCGTTATTTGACACTTTCCATTTTAGACACTAAATGGTTTAGAGA
AAATTCCTTATTTGACACTGTCTTAAAATTTGGTTCCTTGACACTGGAAAAGTTTTTCTTTCCTATTTGACACTAGTCTT
AAATTTTATTCCCTATACGACACTTCCGTTCATTT
>chr1A_669
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----------------------------CCCCACCATCTGGACGACACGCGCAGGTACACTGGGCACGCACGGGAGGGGA
AAAAAAGAAAGGAGTTGATCGCCACGGGTGTCGGCTGGGCGGCGCGGCTTGCATCCCATCCGATGCAAGGCATCGAATCG
CGCCAACCGTCCGCGTGAC------GGCTGCTCCTTTGTTCCCTCTCCACTCCTCTGCTTTCCCCTGCTCCGCCGCTCGC
CTCCTCCTTTCTATATCCG-CTCCAGAATCCGCTCCC-------------------------GAGCCTTCCCGAGTAGTA
CTC----------------------ATATGCAGCCGTGAGATCAGATCGACCGACC-------------------GAAGA
AGAAGAAGGAGAAGCGAGGGGAGATCAGCCAGCGGGCGGAGGATGGCGGACTGGGCACCGGTGGTGGTGGGGGTGGTGCT
CTTCATCCTGCTCTCGCCGGGGCTGCTGTTGGAGATGCCGGGGTCGCACCGCCACGTCGACTTCGGCGGCCTCCACACCA
ACGGCAAGGCCATCTTCGTCCACACCATCCTCTTCTTCGCCGCCTTCACCATCCTCACCCTCGCCCTCCACATCCACATC
TACGCCGGCTAGATACCCATAGCCCACAGATTCATAGATGCGCCATGTAATCTGCTACTAGTACTAGCTAG---------
--------------CTCTTGCTCAGTCAATCGATCCCCTCCATGTAATCC----GCTTGTAATCCCTGCTTGCTTGCCAG
ATCTCTCTGTACTGCCATCGGTTCAAGAAGAAGCGTATTGAACTATTGATTGAGGTGCCGCGCCATGCCTGTTTATTCAT
TT------ATTTGATTTGATCTGATGAGATGTCTTTGTCACCGTGTGGGGATCGATCTGTTGCAGCAAGTTGACTAGCGA
CTGGCTTCAGCGCTAGTCA-----TCGATGGGCATGCTACCGGAGTTTGTTACTATCATCATCCACTTTCCGATTAATCT
TTTTGACTTTGTACGCGATGGAATATGTATTCCTTGCATGGCTCATCAAAGCCACTGAAACTGAAGCATCTTTTGCCAGC
CGCCAGGGACGAG--CAAAGCTCCATCCACCTACAAAGCTCGCTCTGGCCTTTGTGAGCGAGCAGAGGGGGTGGATGAAG
CCGAAATCCCTAATCCACATTGCTCTTGATCCACGGTGCTC---------------------------------------
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>chr1B_709
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----------------------CACGGGTGTCGGCTGGGCGGCGCGGCTTGCATCCCACCCGATGCAAGGCATCGAATCG
CGCCAACCGTCCGCGTGAC------GGCTGCTCCTTTGTTCCCTCCTA---------CTTTCCCCTGCTCCGCCGCTCGC
CC---CCTTTCTATATACTCCTCCAGAATCCACTCCCCCACTCCACTG------------CCGACCCTTCCCGAGCGCTC
CTGCGTGTTCACAACCAAGATCCATATCTGCGGCCGTGAGATCAGATCAGATCAGATCGACCGAAGTCCAAGGAAGAAGG
AGAAG-----------------------C-----GGCGGAGGATGGCGGACTGGGCACCGGTGGTGGTGGGGGTGGTGCT
GTTCGTGCTGCTCTCGCCGGGGCTGCTGTTCGAGATGCCGGGGTCGCACCGCCACGTCGACTTCGGCGGCCTCCACACCA
ACGGCAAGGCCATCTTCGTCCACACCCTCCTCTTCTTCGCCGCCTTCACCATCCTCACCCTCGCCCTCCACATCCACATC
TACGCCGGCTAGACTGACACCCCATACCC---CATAGATGCGCCATGTA--CTACCAATACTACTAGCTAGCTCTTGCCT
GTCCGCGTGCTGTTCTCTTGCTCGGTAAATCGATCCCCTCCATGTAATCAATCTGCTTGTAATCCAATCCCTGCCTGCAA
ATCTGGT-------------------GAAGAAGCGTG--------TTGATTGAGGTGCTGTGCTGTGCCTGTTTATTTAT
CTGATCCGATCTGATGTGATGTGATGAGATGTCTCTGTCACCGTGTGAGGATCGATCTGTTGCAACAGGTTGATTAGCGA
CCCACTTCAATGGTAGCTTAGCTTAGCTCG--------------------------------------------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------------
----------------------------------------------S---------------------------------
-------------------SSSSSS---------------S---------------------------------------
SS---------------------------------------------SSSSSSSSSSSSS-----S-------------S
---S-------S-----------------------------------------SS----------------S--------
--------S-----------SSSSSSS-----------------------------S-----------------------
------------S-------------------------------------------------------------------
----------------------------S---------------------------------------------------
-----------------------------------S---S-S---------------S---S------------S-----
---S----S--S---------------S-------------------------------------S------------S-
-----------------------S-------------------------------------------------S------
------S----S------------------------------------------------------S-----S-------
-----------S-----SSSSSSS---S------------S------S--SS--------------------------SS
----S-----S-S---S-SS-----------S------------------------------------------------
----S-S-SSSS-SS-----SS-S---------S----------S-------------------------S---------
-S--S--S-----------------S-------SS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_107
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-------GTGAAAAACGGGGCACTTCC-----------------------------------------------------
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>reverse_1620
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-------------------CTTAGTCGCTGGGCATGCTA-----------------------------------------
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-----------------------------------
