>input_sequence_86870
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATGATTGTGTTGGTTGTGCGTGGTGCAGCAGCGTCGTCGGGGGAGCCGCACTGCTGCGTGGACCACCACGTGTG
GGGCAAGGCGCTGGAGAACAAGGGGTGCAAGCGGGAGGAGGAGGAGGACGAGTGCGACGCGTGGTGCCAGTCGGCCTGCC
GCGGCGGCGAGTGCAAGAGGCGCCACAGCCTCCACTACTGCCACTGCTACTGCTGA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr1B_1_TraesCS1B01G464200
CATCCGATGTGGACACGGTTTTGACTAAAAATTTGACATCTCATTCGGGTTTGACTGCCACATCACTTTCCACTTGAGCG
CCATGCCG----CCATGA-CCCGTGTGGAGCATGACCAGGACCGTCATTGTCCGTCCAATGTTCGCCGTCGTGTACCGCG
TGCATGGAGAAGGAGGCGTACCTATGCAGCGGCCACAGGATGGTGGAACACCTCTTGTCCCCGATGATCAGAAGTTGGAG
CCACGGATGCTCGCGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTATTGCTCGCGTGTTCTAGCCGGTACA-----AATCAAAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGAACAACGTCAAGTACGTTCATGTCTAGCCAGAT
GAGTTAGCTAGCTTTTCACGTGAGAATACCGTGCAAGCATACCGTGCCCTGCATGTAGAGCCACCACAGCCGAGCACTTA
CACAGGGTGGGGTGCCATCGCAGCTCCATAACGTGGCAGTCAAACCCCAACGACTTGTCAAGTTTTAGTCAAAAAACATG
TCCACCAGGACCAAAATCACAAGAAGCGGTATACGGAACTAAACTTATCTAGTTTGAGAAGTTGAGGGGCCTATATTTGC
CGGTTCTGAAATTAAGGGATCATTTCCATACCATCGAGAAAGTTGAGGGATGAAAAATATACCATCTCCTCCTGAAATAT
CATATTGCAGCATCTCTATGTCAATGGATGGAAACCGTAGCCAATCATGCATGTACCAAATCGAATCGACTTCCTTTATT
TAAGGAAAGGAAAATCCGAAACGTGGGCATGCATGAATCGATCCGGAGAATATAAATACTCAGCAGATGCTACGAGAACA
GTCGGCACCGAGAGAGAAACGCACCTTGAGATCGAAAGGA----------------------------------------
-AGGATCGGAAGATCATCGTCATGGCTGGTATCGCCGCGCGATGGGTGGCCCTTCTTCTCGTCCTCGTGTCGCTGCTCGC
CTCCGCCTCCGCGAGTAAGTTTTACTTCCATGGATCGATTCTTGTTGCATCACACGTACG-------CTGGACTGACGAA
CGGTTGATGATTGTGTTGGTTGTGCGTGGTGCAGCAGCGTCGTCGGGGGAGCCGCACTGCTGCGTGGACCACCACGTGTG
GGGCAAGGCGCTGGAGAACAAGGGGTGCAAGCGGGAGGAGGAGGAGGACGAGTGCGACGCGTGGTGCCAGTCGGCCTGCC
GCGGCGGCGAGTGCAAGAGGCGCCACAGCCTCCACTACTGCCACTGCTACTGCTGACCTCGCACGCACGCACGCACGCAC
GCTCCAATTTTTGCTCCGCAGCGACACCTCCCCTCATTGCTAATTATATTAGTTTTGGTTGTACGCATCATGCATGGATA
TTCAGACTAATAATGTTATAGTGGAATATGATTTTTATTGCGCTGTTTTTGTTTTGTTTGTACTTTTTATTAGTAAGAAA
ACATTGCGTAGTAAGCAGGACTGCAGGAGTGGGTGCCATTAGTAACGTAGTAGTAGCAGCCAGAAAAGAGATCAAAGCCA
TACGGCAGGTGTGTGGTCAACTCTTTCATGTTTTATTTAGGGGAGCTCTTTCATGCTGACGGATATATGAGTGACGTGGA
GAAGAGAAAGAAGAAAATGAAAGGAAAGCAGATTAGAGCATCTCTAGCCGATCCCAACCTGTAAAGGAGATTTTACTCCT
TTAAACCGGGCCTAGCCCAAGTCCTAAATCCAATAGAGGAGTTTTTACTCCTCGGCCCCACCTATGAGTAAAAACACTCG
GCCTGGAGGCGGCTGACTAAAATCTCGTGGCTCTTCTTGCTCCCCTCCGACCCCGACTACACCAAGCTACGTTCCACCAT
CTTCCGCCTCGTGCCGCCACCCCTTTGTCACCGCTATTAGAGTTGACCAATTTGGCCGAGCCTCGTACGACCTCTCCCAC
TAGTAGGAAATGTGCCATTAGTCTCGGTTAATAAAGGCTTTTAGTTCCGGTTGTGCAACCAGAACTAAGCAATCGGGACT
GAAGGCCCCACCGTGTTACGAACCTGGACTAAAGGGGCTCCGCGTGGCTGTTGTGTAGCGCTCAGGCAGGAGGACCTTTA
GTCCCTATTAGTGTTGCTGCCATGCATCAGGAGCTGGGGTTTAGGGTTTTGGAGGGGTTTAGGATTTAGGGGTTCTATTT
TGTGTTTCTTCCTTTTCTTTTTGTGTTTATCATTCAATTTTTTTACATTTAGAGCAGGTGTGTGGTCAACACTTTCATGT
CCTTTTTTTAGGGAAC
>chr1D_1
CATCCGACGTGGACACGGTTTTGACTAAAAATTTGACATGTCATTCGGGTTTGACTGCCACATCACTTTCCACTTCAGCA
CCATGCCA----CCATGCCCCCGTGTGGAGCATGACCAGGACCGTCATTGTCCGTCCGATGTTCGCCGTCGTGTACCGCG
CGCATGGAGAAGGAGGCGTACCTATGCAGCGGCCACAGGATGGTGGAACACCTCTTGTCCCCGATGATCAGGAGTCGGAG
CTACGGATGCTCGCCTGCATGCACGGCACAAGCCCGTCGTGCACGTGCTGCACCTCTATGCGTGCGAGAACGCCCGAGCA
AGCACCGGCAGCGCCATTCGCGCGTGCTCTCGCTGCTGC----CTGTTGCCTTCTCACCGCTAGTCCGTGCGGA------
----------CTCATGGGGCCTTCATTCTAACTCCTTCAGCAAGCGTGTCGAAGGTCACCACCGTGGCCCAACCGCAACT
CCGTGCACCATGAACACGTGTATTACTCGCGTGTTCTAGCCGGATGCTGCCAAGTATCTTTAGTTTCATACTCTGAGATG
TAGTAAGTCAATTTATACTCTTTAACACCAACTTGAAATCCAACACCTGCTTTAGTTTCTGTTTGTGGTGATGTAAGTCC
CTCCCTATAACTCTTGAATTAAGAATTCTTACAATAACAGGGTCTACTCGATGTTAATTAGGCGTAAATGAAACTTTAGC
AAAAATCTCGTAAAACGAAAAGGATATTCAATTAATATAATATCAGGAACAGCGTCAAGTACGTTCGTGTATTATGGAAA
CC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CCTGAAATAT
TATATTACAGCATCTCTATATCAATGGATGGAAACCGTAGCAAATCATGCATGTACCAAATCGAATCGAC----TTTATT
TAAGGAAAGGAAAATCCAAAACGAGGGCATGCATACATCGTTCGGGAGAATATAAATACTCAGCAGATGGTACGAGAACA
ATCGGCACCGAGAGAGGAACGCACCTTGAGATCGATCGATCGGATCGGAGATCAAGAAGGCACAAACGTCTCAAGAAGGA
GAGGATCGGAAGATCATCGTCATGGCTCGTATCGCCGCACCATGGGTGGCCCTTCTTCTTGTCCTCGTTTCGCTGCTCGC
CTCCGCCGCCGCGAGTAAGCTCTACTGCAATCGATCGATACTTGTTGCATTACATGCTGCCTGCCTTCTGGACTGACGAA
CGCTTGATGATTCTGTTGGTTGTGCT-------GCAGCGTCGTCGGGGGAGCCGCATTGCTGCGTAGACCACCACGTGTG
GGGCAACGCGCTGGAGAACAAGGGGTGCAAGCGGGAGGAGAAGGACGACGAGTGCGACGCATGGTGCCAGTCGGCCTGCC
GCGGCGGCGAGTGCAAGAGGCGCGACAGGCTGCACTACTGCCACTGCTACTGCTGACCTCG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr3B_1
CATCTCATGTGGACATGGTTTTGACTAAAAATTTGACATGTCATTCGGATTTGACTGCCACATCACTTTCCACTTCAACA
CCATACCG----CCATGA-CCCGTGTGGAGCATGACCAGGACCGTCATTGTCCGGCCGATGTTCGCCGTCGTGTACCGCC
----TGGAGAAGGAGGCATACCTATGCAACGGCCACAGGATGGTGGAACAC--CTTGTCCCCGATGATCAGAAGTCGGAG
CTACGGATGCTCGCCTGCATGCACGGCACAAGCCCTCATGCAT-GTGCTGCACCTCTATGCGTGCAAGAACGCCCGAGCA
AGCACCGAGAGCGCCATTCGTACGTGCTCTCGCTGCTGC----TCGTTGCC-TCTCACCGCTAGTCCGTGCAGA------
----------CTCATGGGGCCTTCATTCTAACTCCTTCAACAAGTGTGTCGAGGGTCGCCACCGTGGCTCAATCGCAACT
CCGTGCACCATGAACACGTGTATTACTCGCATGTTCTAGCCGGTACA-----AATCAAAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGAACAACGTCAAGTACGT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr1A_1
CATCCGATGTGGACACGGTTTTGACTAAAAATTTGATATGCCATTCGGGTTTGACTGGCACATAACTTTCCACTTCAGCA
CCATGCATGCCGCCATGA-CCTGTGTGGAGCATGATCAGGACCGTCATTGTCCGGCCGATGTTCGCCGTCGTGTACCGCG
CGCATGGAGAAGGAGGCGTATGTATGCAGCGGCCACAGGATGGTGGAATAC--CTTGTCCCGGATGATCAGAAGTCGGAG
CTACGGATGCTCGCCTGCATGGACGGCACAAGCACGTCGTGGACGTGA------------CGTGCACGAACAC-------
-------------CCATTCGCGCGTGCTCTCGCTGCTGC----TCGTTGCCTTCTCACCGCTAGTCCGTGCGGA------
----------CT-----------------AACTCCTTCAGCAAGCGTGTCGAGGGTCACCACCGTGGGTCAACCACAACT
ACGTGCACCATGAACACGTGTATTACTCGCGTGTTCTAGCCGGTACAGTACAAATCAAAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGAACAGCGTCAAGTACGTTCGTGTCTAGCCAGAT
GAGTTAGCTAGCTTTTCACGTGAGAAT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>chr2B_1
CATCCGATGTGGACACTGTTTTGACTAAAAATTTGACATGCCATTCAGGTTTGACTGCCACATCACTTTCCACTTCAGCA
CCATGCCGG-CGCCATGA-CCTGTGTGGAGCACGACGAGGACCGTCATTGTCTGTCCGATGTTCGCAGTCGTGTACCGCG
CGCATGGAGATGGATGCGTACCTATGCAGCGACCACATGATGGTGGAACACATCTTGTCCCCGATAATCAGAAGTCGGAG
------ATGCTCGCCTGCATGCACGGCACAAGCCCGCCGTGCACGTGCTGCACCTCTATGCGTGCAAGAACGCCCGAGCA
AGCACCGGCAGCACCATTCGCGCGTGCTCTCGCTGCTGCTCGATCGTTGCCTTCTCACCGCTAGTCCGTGCGGACTCATG
GGGCTTCATTCT-----------------AACTCCTTCAGCAAGCGTGTCGAGGGTCACCACCGTGGCTCAACCGCAACT
CCGTGCACCATGAACACATGTATTACTCGCGTGTTCTAGCCGGTACA-----AATCAAAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TGAACAGCGTCAAGTACGTGCATATCTAGGCAGGT
GAGTTAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>SNPs
---------------------------------------S-----------------------------------S---S
---------------------------------------------------------S----------------------
S--------------------------------------------------------------------------S----
-S------------SS----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
S-----S------------S---------------------S----------------------------SSSS------
-----------------S-----S----------SS----S--S-------------------------S----------
S---------------S------------------SS-SS----------------------------------------
---------------------------S----------S-S------------------S--------S-----------
-------S-----------S-S----S-S--S-------S----------S---S-SSSS--------------------
--S---------S------------SSSSSSSS-----------------------S--------S--------------
------S---------------------------------S----S--------------S-------------------
-----------------------S----S--S-----------------------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS
>forward_868
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CTGCATGTAGAGCCACCACA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_2212
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TCGGCCCCACCTATGAGTAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
