>input_sequence_86824
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--------------------------------------------ATGTTTCAGGTTGGGCTGGCATCAGGGCTTGGGCAA
TATACCGAAGTCGTAAGGGAAGCTCGGAAGGGATTAAAACTTTGGAATGTGAGGTTTGACGACGCAATGGGGTTGTCGTT
CCAAGATGGCCATCTGCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTCAGTCCTATTTGACTTATG
GTACATTCAAACACTAG---------------------------------------------------------------
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>chr5B_1_TraesCS5B01G322600
TGTCCATAGCCAGGAAACCATGACTATCTGTTGATCACAACGAGCTAGTCAACTAGAGGCTCACTAGGGACATATTGTGG
TCTATGTATTCACACGTGTATTACGATTTCCGGATAATACAGTTATAGCATGAATAAAAGACAATTATCATGAACAAGGA
AATATAATAATAATACTTTTATTATTGCCTCTAGGGCATATTTCCAACACATAGGTCATTGCCCCTTTTGCCACAACGGC
ACCAGCACAAACACGAGCGTGGTCGTCCTCAACTAGTTCGTCACACGGCCTCCGCGCAAGCCCTGCTCATGTATGCTTAC
ACCAAAAGTACAACTCTTGCTACTCTCCTCGTACTTGCACTTGCTTATTTTATAAGCAATAATCCTATTGCTTCCTCTTG
GGGAAAGGGATCCCATGTTGAAGCTGTCTTGGTGCTCACCCGCTGTTTATATTCATCACCATAGTGTACGAAACATATGA
AAACCATTCTGGCTTCAGAGAA-AATATAACCAGTACATGTGCAATTGCGCGAGAAGTTCCCTTATGAAAGTTCCATGTA
AACAAACCACATGAAAGTTCATCAAGAG----------------------------------------------------
------AAACTTTGTAAGTTCAAAATGGGCATGCCTAACAGTGCATGAATAAAAAAACTAAACCTAACAAAGTCCATGTT
GGTCTAGATTGCTAGATGTACTATATTG-------------TTGATTAAAAGTTTTGATAGTGTAATAGCAGAAAAACAT
AGGGCAGGTCTTATTTAGTTGCAGAATAAAAGTCCTG-TTTTGGACTTTTGGTTGCAGCTTGCATCTCCCAAATTGGGTA
CGTTGAGGTTAGCCGAGTACCTCAAATGCAAAGCAGCAATGTTTATACATGGAAGTATCTAAATTTGGAACACTGTCCTT
TGCCTATACTTACAACAATTAATTTTTTGAATGTAGCTCTGCAGAAAGCACAACACTAGTTCTGCACAGTAATGATGTTG
ATATGCTCA--------CTTCTCATGATC---ATCGATCTTTTGATGTTTCAGGTTGGGCTGGCATCAGGGCTTGGGCAA
TATACCGAAGTCGTAAGGGAAGCTCGGAAGGGATTAAAACTTTGGAATGTGAGGTTTGACGACGCAATGGGGTTGTCGTT
CCAAGATGGCCATCTGCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTCAGTCCTATTTGACTTATG
GTACATTCAAACACTAGTTCTCCCGGTAGCTCTAAAGGGATCCATAATTTATTTGCTCTCTACTTTGATTAATTTCCTCT
CTCAACTCTTCGCTGAGCACAACCATTCTTAAA-TTCTTGAATTTGATT-GGTATAAATATGCCAATGTAATTCAGTACA
AGTTCTTCATGATCAATGAGAATGGAGAACCACCGGACAAATCTGAAATATTTTTCCAATCATACTAATTCTTATGCTTT
TT--GTTCTTATGCTTTGTAA-CATTGTTCAGTTTGCATTGGAAAACTTGTACTATTCCTGTTGCTC-------------
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-----------------------------------------TCACCTTCCGCCGCCTCAGCGCACAGGCCGTTCACCTTC
GCCACCCTAGGCCGTACACCACTGCGAAGAGAGTCCGTTCAACTACGTGATAGAGATTTT-TGTACCAGACATAGTATTA
GTTCGGCGTGTAATCTATCATCAGTCCATGAAAAATCACAGAATATTTGGTGTGTGTGTAATCTATAATTTTATTGTCAT
GTGGGTGTGGTTGAACATTTGCTGTGCAGGAAATAGGTCTGTGATTTTTGTGTTGCGGTGGGTGCTATGGATAATATGAA
AATGTGCAATCGGTGTGGTGTATATGTCATTCATCTATGAAAATGTGCAGCTGTTGTGGTGTATATGTCATTCATGTACA
TGTATTATATGTGTGGAAAATTTTCTGTCTATGATCATATGATTGTTACTTCTTCAAAGAAGGTATACATGACCGTTTGG
TGTGCATGCAAGAATGAAAGAAATGGTTTACATAAAAAACAATTAATCAGTACAAATT-AAAACAATGATCAGTTCAAAA
TGAA-AAAATGGTTAGTTTGAATTTAAAAATCAGTTTGAAGTAAAAGCCATGATTAGATTGAATTCTAAAAAATGAATGA
TCAGTTCAAATTAAAGAGAATAATCAGTTTGGGTTAAAAAAGTTGGGTGAATGTCCTACTATTTGGTTGGGAAAAAAGCT
CAAACAAAAAGAAACCCACGGAAAATCAAATGGTAAAAA
>chr2D_204
CCAACAC-------------------------------------------------------------------------
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----------------------------------------------------AGGCCGTTGCCCCTTTTGCCACAACGGC
ACCAGCACAAACACGAGCGTGGTCATCCTCAACCAGTTCCTCACGCGGCCTCCGCGCAAGCCCTGCTCGTGTATGCTTAC
ACCAAAAGTACAACTCTTGCTACTCTCCTTGTACTTGCACTTGCTTATTTTCTAAGCAATAATCCTATTGCTTCCTCTTG
GGGAAAGGGATCCCATGTTGAAGCTGTCTTGGTGCTCACCCACTGTTTATATTCATCACCATAGTGTACGAAACATATGA
AAACCATTCTGGCTTCGGAG-A-AATATAACCAGTACATGTGCAATTGCGCGAGAAGTTCCCTTATGAAAGTTCCATGTA
AACAAACCACATGAAAGTTCATCGAGAGAAACTTTGTAAGTTCAAAATGGCTATAGGAAAACTTTGTAGGTTCAGATGGG
TATAGAAAACTTTGTAAGTTCAAAATGGGCATGCCTAACAGTGGATGAATAAAAAAACTAAACCCAACAAAGTCCATGTT
GGTC----------------------------------------------------------------------------
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>chr7B_209
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------------------------------------------------ACATAGGTCGTTGCCCCTTTTGCCACAACGGC
ACCAGCACAAACATGAGCGTGGTCGTCCTCAACTAGTTCGTTACGCGGCCTCCGCGCAAGCCCTGCTCATGTATGCTTAC
ACCAAAAGTACAACTCTTGCTACTCTCCTCGTACTTGCACTTGCTTATTTTCTAAGCAATAATCCTATTGCTTTCTCTTG
GGGAAAGGGATCCCATGTTGAAGCTGTCTTGGTGCTCACCCGCTGTTTATATTCATCATCATAGTGTACGAAACATATGA
AAACCATTCTGGCTTCGGAG-AAAATATAACCAGTACATGTGCAATTGCGCGAGAAGTTCCCTTATGAAAGTTCCATGTA
AACAAACCACATGAAAGTTCATCAAGAGAAACTTTGTAAGTTCAAAATGGCTATAGGAAAACTTTGTAGGTTCAGATGGG
TATAGAAAACTTTGTAAGTTCAAAATGGGCATGCCTAACAGTGCATGAATAAAAAAACTAAACCCAACAAAGTCCATGTT
GGTCTAGATTGCTAGATGTACTATCTTGTTGATTAAAAATTTTGATTAAAAGTTTTGATAGTGTAATAGCAGAAAAACAT
AGGGCAGGTCTTATTTAGTTGCAGAATAAAAGTCCTG-TTTTGGACTTTTGGTTGCAGCTTGCATCTCCCAAATTG--TA
CGTTGAGGTTAGCCGAGTACCTCAAATGCAAAGCAGCAATGTTTATATATGGAAGTATCTAAATTTGGAACACTGTCCTT
TGCCTATACTTACAACAATTAATTTTTTGAATGTAGCTCTGCAGAAAGCACAACACTAGTTCTGGACAGTAATGATGTTG
ATATGCTCA--------CTTCTCATGATC---ATCGATCTTTTGATGTTTCAGGTTGGGCTGGCATCAGGGCTTGGGCAG
TATACCGAAGTCGTAAGGGAAGCTCAGAAGGGATTAAAACATTGGAACGTGAGGTTTGTCGACGCAATGGGGTTGCCGTT
CCAAGATGGCCATCTGCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTTAGTCCTATTTGACTTATG
GTACATTCAAACACTAGTTCTTCCGGTAGCTCTAAAGGGATCCATAATTTATTTCCTCTCTACTTTGGTTAATTTCCTCT
CTCAACTCTTCGCTGAGCACAACCATTCTTAAA-TTCTTGAATTTGATT-GTTATAAATATGCCAATGTAATTCAGTACA
AGTTCTTCATGATCAATGAGAATGGAGAACCACCGGACAAATCTGAAATATTTTTCCAATCATACTAATTCTTATGCTTT
TT--GTTCTTATGCTTTGTAA-CATTGTTCAGTTTGCATTGGAAAACTTGTACTATTCCTGTTGCTC-------------
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-----------------------------------------TCACCCTCCGCCGCCTCAGCGCACAGGTCGTTCACCTTC
GCCACCCTAGGCCGTACACCACTGTGAAGAGAGTCCGTTCAACTACGTGATAGAGATTTT-TGTACCAGACATAGTATTA
GTTCGGTGTGTAATCTATCATAAGTCCATGAAAAATCACAGAATATTTGGTGTGTGTGTAATCTATAAGTTTATTGTCAT
GTGGGTGTGGTTGAACATTTGCTGTGCAGGAAATAGGCCTGTGATTTTTGTGTTGCGGTGGGTGCTATGGATAATATGAA
AATATGCAATCGGTGTGGTGTATGTGTCATTCATCTATGAAAATGTGCAGCTGTTGTGGTGTATATGTCATTCATGTACA
TGTATTATATGTGCGGAAAATTTTCTGTCTATGATGATATGATTGTTACTTCTTCAAAGAAGGTATACATGACCGTTTGG
TGTGCATGCAAGAATGAAAGAAATGGTTTACATAAAAAACAATTAATCAGTACAAATTAAAAACAATGATCAGTTCAAAA
TGAAGAAAATGGTTAGTTTGAATTTAAAAACCAGTTTGAAGTAAAAGCCATGATTAGATTGAATTCTAAAACATGAATGA
TCAGTTCAAATTAAAGAGAATAATCAGTTTGGGTTAAAAAAGTTGGGTGAATGTCCTACTATTTGGTTGGGAAAAAAGCT
CAAACAAAAAGAAACCCATGGAAAATCAAATGGTAAAAA
>chr3B_209
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------------------------------------------------ACATAGGTCGTTGCCCCTTTTGCCACAACGAC
AGCAACACAAACACGAGCATGGTCGTCCTCAACCAGTTCCTCACGCGGCCTCCGTGCAAGCCCTGCTCATGTATGCTTAC
ACCAAAAGTACAACTCTTGCTACTCTCCTCGTACTTGCACTTTCTTATTTTCTAAGCAATAATCCTATTGCTTCCTCTTG
GGGAAAGGGATCCCATGTTGAAGCTGTCTTGGTGCTCACCCGCTGCTTATATTCATCACCATAGTGTACGAAAGATATGA
AAACCATTCTAGCTTCCGAG-AAAATATAACCAGTACATGTGCAATTGCGTGAGAAGTTCCATTATGAAAGTTCCTTGTA
AACAAACCACATGAAAGTTCATCGAGAGAAACTTTGTAAGTTCAAAATGGCTATAGGAAAACTTTGTAGGTTTAGATGCG
TATAGAAAACTTTGTAAGATCAAAATGGGCATGCCTAACAGTGCATGAATAAAAAAACTAAACCCAACAAAGTCCATGTT
GGTC----------------------------------------------------------------------------
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>chr5B_758
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-----------------------------AAGTCCTGTTTTTGGACTTTTGGTTGCAGCTTGCATCTCCCAAATTGGATA
TGTCGAGGTTAGCCGAGTATCTCAAATGCAGAGCAGCAAGGTTTATACATGGAAGTATCTAAATTTGGAACACTGTCTTC
TGCCTCTACTTACAGCAATTAA--------ATGTAGCTATGCAAAACGCACA--ACTAGTTATGGACAGTAGTTATGTTG
ATATGCTCA--------CTTCTCATAGATTCTATCGATCTTTTGATGTTTCAGGTTGGGCTGGCATCAGGGCTTGGGCAG
TACACCGAAGTCGTAAGGGAAGCTCAGAAGGGCTTAAAACTTCGGAACGTGAGGTTTGTCGATGCGATGGGGTTGCCGTT
CCAAGACGGCCATCTGCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTCAGTCCTATTTGACTTATG
GTACATTCAAACACTAGTTCTCCCGGTAGCTCTAAAGGGAAACATTATTTATTTGCTCTCTACTTTGGTTAATTTCCTCT
CTGAACTCTTCGCTG-GCACCACCATTCTTAAAATTCATGAATTTGATT-GGTATAAATATGCCAATGTAATTCAGTACA
AGTTCTTCATGATCAATGAGAATGGAGAACCACCGGA-------------------------------------------
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>chr4A_774
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----------------------------------------------TTTTGGTTGCAG-CTGCATCTCCCAAATTGGGTA
CC-CGAGGTTAGCCGAGTATCTCAAATGCAGAGCAGCAACGTTTATACATGGAACCATCTAAATTTGGAGCATCATCTAT
TGTCTCCACTC-CAGCAATTAG--------ATGTAGATGCATACAGAAAAT---ACTAGCTTTGGGCAGCAGTGGTGTCT
ATGCGCTCA--------TTTCTCATAGATTTTATCGATCTTTTGACGATTCAGGTTGGGCTGGCATCAGGGCTTGGGCAG
TACACCGAAGTCGTAAGGGAAGCTCAGAAGGGCTTAAAACTTCGGAACGTGAGGTTTGTCGACGCGATGGGGTTGCCGTT
CCAAGACGGCCATCTGCATCTGAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTCAGTCCTATTTAACTTATG
GTACATTCAAACACTAGTTCTCCCTGTACCTCCAAAGAGATCCATTATTTTTTTGTTCTCTACTTTAGTTAATTTCCTCT
CTGAACTCTTGGTTGAGCACATTG---------------------GATTGGGTATAAACATGCCAATGTAATTCAGTACA
AGTTCTCCATGATCAATGAGTACGGAGAACCTCCGGA-------------------------------------------
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>chr5D_774
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----------------------------------------------TTTTGGTTGCAGCCTGCATCTCCCAAATTGGGTA
CGCAGAGGTTAACCGAGTATCTCAAATGCAGAGCAGCAAGGTTTATACATGGAAACATCTAAATTTGGTGCATTGTCTTT
TGTCTCTACTC-CAGCAATTAG--------ATGCAGCTGCATCCAGAAAGT---ACTAGCTTTGGACAGCAGCGATGTCG
ATGTGCTCATAAGCTCATTTCTCATAGATTTTATCCATCTTTTGGCGTTTCAGGTTGGGCTGGCATCAGGGCTTGGGCAG
TACACCGAAGTCGTAAGGGAAGCTCAGAAGGGCTTAAAACTTCGGAACGTGAGGTTTGTCGACGCGATGGGGTTGCCGTT
CCAAGACGGCCATCTGCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATAGGCTGGCTCAGTCCTATTTGACTTATG
GTACATTCAAACACTAGTTCTCCCTGTACCTCCAAAGAGATCCATTATTTATTTGTTCTCTACTATGGTTAATTTCCTCT
CTGAACTAAAAGTTGAGCACATTG---------------------GATT-GGTATAAACATGCCAATGTAATTCAGTACA
AGTTCTCCATGATCAATGAGTACGGAGAACCTCCGGA-------------------------------------------
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>chr6B_937
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-------------------------------------------------ACAACACTAGTTCTAGACAGTAATGATGTAG
ATATGCTCA--------CTTCTCATGATC---ATCGATCTTTTGATGTTTCAGGTTGGGCTGGCATCCGGGCTTGGGCAG
TATACCAAAGTCGTAAGGGAAGCTCAGAAGGGATTAAAACTTCAGAATGTGAGGTTTGTCGACGCAATGGGGTTGCCATT
CCAAGATGGCCATTTGCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTCAATCCTATTTGACTTATG
GTACATTCAAACACTAGTTCTCCCGGTAGCTCTAAAGGGATCCATAATTTATTTGCTCTCTACTTTGGTTAATTTCCTCT
CTGAACTCTTCGCTGAGCACCACCATTCTTAAA-TTCTTGAATTTGATT-GGTATAAATATGCCAATGTAATTCAGTACA
AGTTCTTCATGATCAATGAGAATGGAGAACCACCAGACAAATCTGAAATATTTTTCCAAGCATACTAGTTCTTATGCTTT
TTTTGTTCTTATGCTTGGTAAACATTGTTCAGTTTGCATTGGAAAACTTGTACTATTCATGTTGCTCTCAAGCTATTTGT
TTATATGCCTAAAAGAACTTAAATAATCCTTTTTGATGTTTCTTTGTTGTCAAATAGAAGCTAAAATAGTTTGGGCATAT
GCAGTAATAACATTTCTTATGGAGCAGTACACATATTTAGAACTTTTAGTTAGTTACAAAACATGAATCCTCATTCCCAA
AAACCTGCAATTAACATCAATTTATATATTAACATCTGGCGTCACCCTCCGCCGCCTCAGCGCACAGGCTGTTCACCTCT
GCCACCCTAGGCCGTACACCACTGCGAAGAGAGTCCGTCCAACTACGTGATAGAGAATTTTTGTACCAGACATAGTATTA
GTTCGGTGTGTAATCTATCATCAGTCCATGAAAAATCACAGAATAGTTGGTGTGTGTG----------------------
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>SNPs
SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----------------------
--------------------------------------------S-----------------------------------
---------------------------------------------------S----------------------------
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----------------S---S-----------------------------------------------------------
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----------------------------------------------------------------S---------------
------------------------S-------------------------------------------------------
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----------------------------------------------------------------S---------------
-------------------------------------------------------------------------------S
-------------------------S--------------------------------S----------------S----
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-------------------------------------------------------------------S------------
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----------------------------------------------S---------------------------------
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------S-------------------------------------------------------------S-----------
-------------------------------------S------------------------------------------
---S-------------------S--------------------------------------------------------
-------------S---------------------S--------------------------------------------
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------------------------------S----------------------------------------S--------
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------------------S--------------------
>forward_20
TGTCCATAGCCAGGAAACCA------------------------------------------------------------
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>reverse_1196
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---------------------------------------------------------------------------TCGTT
CCAAGATGGCCATCT-----------------------------------------------------------------
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>forward_1146
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-----CGAAGTCGTAAGGGAAGCTCG------------------------------------------------------
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>reverse_2351
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------------------------------TCAGTTTGAAGTAAAAGCCATGAT--------------------------
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