>input_sequence_86803
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-ATGGGTAGTGGGCATTTTGTCGCTGAAGGGTATGGAAAAGCAGCTTTTATGAGAAACATCCAGATTGTTGACATCCACA
ACAAGCTTGTCACTCCAAATAGACACAAAGACCTTCTTGGAACTAGTGATAAAACAAAATATAGTATTGATGGCTATGTA
GTTGATAATCATGGTATGCATATGTACTATGGTGGACCAGGTAATTTAGTCTGA--------------------------
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>chr3A_1_TraesCS3A01G513400
ATTGATAATGGACCAAAGGGTCACGAAGAAGGTGTAGGTGCTTGTTATTCGGTAGCTCCAAGCATCACTGGTGATAGCTT
TGCGTGGTTTCTTGTTGTTTGGGTAATTAATAATATTTACTATCATACACATTATATTATCAAGTACAA-----------
---------ATTAATATAAATTGATATACTTTCTTTCTATCTTTGGATGAACTTGGATAATAGCGCGATGGCAAACTACA
CAAGCCCTGCTACGATCACGTATGTCCTGGTTTTGTGCAAGTTAGTCACCGTGTTGGTCTTGGAGGAAGAGTACTTCCGG
TTTCAGTCTACAATGGACCACAATATGTGATAGACATTTACATTTTCAAGGTACTCTCTTTCTCAATGCAATTTATGGTT
TTCTACATTTAATTTACAGGGGGTGCATGTGGAAATTTGTACTTACATGAATTAGTTGAT-CACACAACAAATGTAGGTA
GCTCAATATGATATCAATTGTGTAATTTTGGAATGCC-AACATTTCTTTTATTTGTAGTGTTCCAATACGCACATACTAT
------------CATTTGACAAATTATCAAGAACATGGCCTAAAATAAAA-TTACCAGTCACCTTACCATTAAAATAACA
C--ATTCAATAAGCACTTCCAATGATGGAGACCATTTGATATTCAAGGAGATTCACATACGCATTGTCTTGATGTACATC
ACTTGGTATGGGAAAATGTTATGAGAAGAATG-CATCCTATATATCTTCAGAGGAACAGAAACAACTGCAAGCACACTAG
-ATATTTAGCATAATAGCATTGAGGATTTTATGTCCTTGTATGTGTTCAGTAATCTTCCATGCAT--TTTGATTTTCCTT
AGGACCCCAAAACGGCGAATTGGTGGCTGGTGTATGGTGAAGAAAAGACACCGATTGGATATTGGCCAAGTTCACTCTTC
TCTCACATTAAATATAAATGAATTTTCTCATACTGGGGTGGTTTTGTTCAGGGCCCAACAGCTTCATCAGACTCCCCACA
AATGGGTAGTGGGCATTTTGTCGCTGAAGGGTATGGAAAAGCAGCTTTTATGAGAAACATCCAGATTGTTGACATCCACA
ACAAGCTTGTCACTCCAAATAGACACAAAGACCTTCTTGGAACTAGTGATAAAACAAAATATAGTATTGATGGCTATGTA
GTTGATAATCATGGTATGCATATGTACTATGGTGGACCAGGTAATTTAGTCTGAGAATGTACTCTACAAACTACAATAAA
TTTTCAATATACTTCTCGAGTTGGACATTTACATAATTATTGGGACTTCACATACATTCAAGTTTTTAATGTGGTGAGTA
CTTCATCAATCCCATCAAGGCAATGAGCATATGAAAAAAATAACATGAATACAAATTTTGAGGGACACACTCTAATATTT
TAGTTGATCATGGATAATTGCTTGGGTTTGTCCCCAAAAATGAAATTTCCATACTTACGATGTATGGACGTGTTTCTAAT
GGGAGGGTTTGGGCAGGTACAAAGTCCTCATGTGAGAGGCAG-ATCTCCTATTAGACACATAAATTTGATATTTTCTATT
CGTACTGTAATAGAGCGTTGACCTTGTAAACTTTGTTCTTAGAGGATGACATATACTGACACTAAAGTTTCACTTTTTTA
TGTCTGCTATTTTTTGAATTAAAAAATGAAACACTTCAAATTTGAAATCTCCTTTGACAGCCATCAAACATTTCAACATG
TTCTTCCATTGGCTACGATTTGAGCCTAGCCCACAAAACATGCCATTGTGACAAATTTTTCTGTTTAATTTGTTAGAA-C
ATCACATGCATTTCCTGAATTAGGAGAATT-TTTTAATTTCAATTCAATTTGGAAGCCCAAACACCCTCCA--CCCAAAG
GTCAACAGTAGAACTTGCTGTCAAACTTCTTGAAATTCATAAAAAAGTTACCATCAATTGTTTACTTCATTGGAATAAAT
CTGACATCTAACTATAAAATTGAACTATTTGTCCACCCAACCACAAGCCGTAACATAGAAACCCAAAATCTAGATTGAAT
TTAAAAGTTTCCCCTAAAGATTTTCTTTAAATGTCACATACATTTTCTTTTGTAATGACAGGAATTTTTTATAAATGGCA
TGAACTTTTCGAACAT----------------------------------------GTTACTCCCTCTATCCATCTATAA
TGGGCCTAATGCATTTTTCGAGACTAAATTTGACCCCATCTTAGATCAATAATATATGA
>chr3D_1
ATTGATAATGGACCAAAGGGTCACGAAGAAGGTGTAGGTGCTTGTTATTCGGTAGCTCCAAGCATCACTGGTGATAGCTT
TGCGAGGTTTCATGTTGTTTGGGTAATTAATAATATTTACTATCATACACATTATATTATAAAGTACAA-----------
---------ATTAATATAAATTGATATACTTTCTTTCTATCTTTGGACGAACTTGGATAATAGCGCGATGGCAAACTACA
CAAGCCCTGCTACGATCACGTATGTCCTGGTTTTGTGCAAGTTAGTCACCGTGTTGGTCTTGGAGGAAGAGTACTTCCGG
TTTCAGTCTACAATGGACCACAATATGTGATAGACATTTACATTTTCAAGGTACTCTTTTTCTCAATGCAATTTATGGTT
TTCTACATATAATTTACAGGGGGTGCATGTGGAAATTTGTACTTACATGAATTAGTTGAT-CACACAACAAATGTAGGTA
GCTCCATATGATATCAATTGTGTAATTTTGGAATGCC-A-CATTTCTTTTATTTGTAGTGTTCCAATACGCACATACTAT
CA-TTTGACAGAGATTTGACAAATTATCAAGAACATGGCCTAAAATAAAA-TTACCAGTCACCTTACCATTAAAATAACA
CATATTCAATAAGCACTTCCAATGATGGAGACCATTTGATCTTCAAGGAGATTCACATACGCATTGTCTTGATGTACATC
ACTTAGTATGGGAAAATGTCACGAGAAGAATG-CATCCTATATATCTTCAGAGGAACAGAAACAATTGCAAGCACACTAG
-ATATTTAGCATAATAGCATTGAGGATTTTATGTCCTTGTATGTGTTCAGTAATCTTCCATGCAT--TTTGATTTTCCTT
AGGACCCCAAAACGGCGAATTGGTGGCTGATGTATGGTGAAGAAAAGACACCGATTGGATATTGGCCAAGTTCACTCTTC
TCTCACATTAAAGATAAAGGAATTTTCTCATACTGGTGTGGTTTTGTTCAGGGCCCAACAGCTTCATCAGACTCCCCACA
AATAGGTAGTGGGCATTTTGCCGCTGAAGGGTATGGAAAAGCAGCTTTTATGAGAAACATCCAGATTGCTGACATCAACA
ACAAGCTTGTCACTCCAAATAGACACAAAGACCTTCTTGGAACTAGTGATAAAATGAAATATAGTATTGATGGTTATGTA
GTTGATAATCATGGTATGCATATGTACTATGGTGGACCAGGTAATTTAGTCTGAGAATGTACTCTACAAACTACAATAAA
TTTTCAATATACTTCTCGAGTTGGACATTTACATAATCATTGGGAGTTCACATACATTCAAGTTTTTAATGTGGTGAGTA
GTTCATCAATCCCATCAAGGCAATGAGCATATGAAAAAAGTTACATGAATACAAAATTTGAGGGACACACTCTAATATTT
TAGTTGATCATGGATAATTGCTTGGGTTTGTCCCCGTAAATGAAATTTCCATACTTACGATGTATGGACGTGTTTCTAAT
GGGAGGGTTTGGGCAGGTACAAAGTCCTCATGTGAGAAGCAG-ATCTCCTATTAGACACATAAATTTGATAGTTTCTATT
CGTACTGTAACAGAGCGTTGACCTTGTAAACTTTGTTCTTCGAGGATGACATATACTAACACTAAAGTTTCACTTTTTTA
TGTCTGCTATTTTTTGAATTTGAAAATGAAACGGTTCAAATTTGAAATCTCCTTTGACAGCCATCAAACGTTTCAACATG
TTCTTCCATTGGCTACGATTTGAGCCTAGCCCACAAAACAGGCCATTGTGACATATTTGTCTGTTTAATTTGTTAGAATC
ATCACATGCATTTCCCGAATTAGGAGCAAAATTTTAATTTCAATTCAATTTGGAAGCCCAAACACCCTCCCCCCCCAAAG
GTCAACAGTAAAACTTTCTGTCAAACTTCTTGAAATTCATAAAAAAGTTACCATCAAGTGTTTACTTCATTGGAATAAAT
CTGACATCTAACTATAAAATGGAACTATTTGTCCACCCAACCACAAGCCGTAACATAGAAACCCAAAATCTAGATTGAAT
TTAAGAGCTTCCTCTAAAGATTTTCTTTAAATGTCACATACATTTTCTTTTGTAATGATGGGAATTTTTTATAAATGGCA
TGAACTTTTTGAACATTAATTTTTTTATGAAGCTGTATTGAGTTTTTTCGTAACATGTTACTCCCTCTATCCATCTTTAA
TGGGCCTAATGCATTTTTCGAGACTAACTTTGACCACATCTTAGATCAATAATATATGA
>chr3D_1
ATTGATAATGGACCAAAGAGTCAAGAAGAAGCTGTAGGTGCGTGTTATTCGGTAGCTCCAAACTCCACTGGCGATACCTT
TGCAAGGTTTCATGTTGTTTGGGTAATTAATAACATTTCCTCTTTTACGCATTATATTATCAAGTACAACAATTTTATAA
CATGAAATTATAAACATAAACTGATATACTTTGTTTTTACCTTTGAACGGACTTGGATAACAGCGAGATAGCAGACTACA
CAAGCCCTGCTATGATCATGTATGTCCTGGTTTTGTGCAAGTTAGTCACCGTGTTGGTCTTGGAGGAAGAGTACTTCCTA
TTTCAGTCTACAACGGACCACAATATGTGATAGACATTTACATTTTCAAGGTGCTGACTTGCTCAATGAAATTATTGATT
TTCTACATATAA---ACAGGTGGTGCATATGAAAATTAGTACTTACTTGAATTAGTTGATTCACACAACCAATTTAGGTA
GCTCGATATGATATCAATTGTGTAATTCTGGAACACCAA-CATTTGTTTTATTTCTAGTCATTCGACACCCACATACTAT
TTTTTTGACATGCATTTGACAAATTATCAAGAACATGGCCTAAAATGGAA-TTACGATTCACCTTACAATTAAAATAACA
TATATTCAGCAAACACTTCCAATCATGGAGAATATTTGATCTTCAAGGA--TTCACATATACATTGTCTTGATGTACATC
CCTTATTATGGGAAGATGTTATGAGAAGAATA-CATAATATATATCTTCAGCGGAACAGAAACAATTGCATGCACACTAG
-ATATT-AGCAAGATAACATTGAGTATTTTATGTCCTTGTATGTGCTCGGTAATCTTTCATGCAT--TTTGATTTACCTT
AGGACCCAAAAACAGCGAATTGGTGGGTGATGTATGGTGAAGAAAAGACACCGATTGGATATTGGCCAAGTTCACTCTTC
TCTCACTTTAAAGATAAAGGAATTTCCTCATTCTGGGGCGGTTTTGTTCAGGGCCCAACAGCTTCATCAGACTCTCCACA
AATTGGTAGTGGGCATGTGGCCTCTGAAGGGTATGGAAAAGCAGCTTTTATGAGGGACATTCAGATTGTTGACAACAACA
ACAAGCTTGTCACTCCAAATAGACACAAAGACCTTGTTGGATCTAGTGATAAAAAGAAATATAGTATTGATGGTTATAAA
GTTGATAACCATGGTATGCATATGTATTATGGTGGACCAGGTAATTTGGTCTAAGAATGTACTCTACAAACTACAATAAA
TTGTCAGCATACTTATTGAGTTGGACATTTACATAATTATTGGGAGCTGTCATACATCCGAGTGTTTATTCCAGTGAGTA
GTTTAGCAAACCCATCAAGGCAATGAGCATATGAAAAAAG-AACATGAATAGAAATTTTGAGGGACACAATGCAATATTT
G------TCATGGATAATTGCTTGGATTTGTTCACGCAAAACAAATTCTCATACTTCCAATGTATTGATATGTTCCTAGT
GGTACAGTTCGGGCGGGTACAAAGTCCTCACATGAGAAACAG-GTCTCCTATTAGACACATAAATTT-ATATTTTCAATT
CCTACTGCAACAAAGCATTGACCTTGTAAACTTTGTTCTTCAAAAGTTAAATATATTGACCCTAAAGTTTCACTTTTTTA
TGTATGCTATTTTTCGAATTCCAAAATGAAACGGTTCAAATTCAAAATATCCT---------------------------
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>chr3B_1
ATTGATAATGGACCAACGGGTCAGGAAGAAGGTGTAGGTGCTTGTTATTCGGTAGCTCCAAACTCCACTGGTGATAGCTT
TGCAAGGTTTCATGTTATTTGGGTAATTAATAACATTTCCTCTTTTGCACATTATATTATCAAGTACAACAATTTTATAA
CATGAAATTATAAACATAAACTGATATACTTTG-TTTTACCTTTGAACGAACTTGGATAACAGCGAGATGGCAAACTACA
CAAGCCCTGCTACGATCACGTATGTCCTGGTTTTGTGCAAGTTAGTCACCGTGTTGGTCTTGGAGGAAGAGTACTTCCTG
TTTCAGTCTATAACGGACCACAATATGTGATAGACATTTACATTTTCAAGGTACTCGCTTGCTCAATGAAATTGTCATTT
TTCTACATATAATTTACAGGTGGTGCATATGAAAATTTGTACTTACTTGAATTAGTTGATTCACATAACCAATTTAGGTA
GCTCGATATGGTACCAATTGCATAATTCTGGAACACCAT-CATTTTTTTAACTTCTGGTCATTCCACACCCACATACTAT
CT-TTTGACATGCATTTGAGAAATTATCAAGAACATCGCCTAAAATAAAA-TTACCACTCACCTTATAGTTAACATAACA
CATATTCAGCAAAAAGTATCAATCATGGATAACAATTGATCTTCAAGGA--TTCCCATATACATTATCTTGATGTACATC
CCTTATTACAAGAAAACGTTATGAGAAGAAATGCATAATATATATCTTCAGAGGAACAAAAACAATGGCATGCACACTAG
-ATATT-AGCAAAATAACATTGAGTGTTTTATGCCCTTTTGTGTGCTCAGTAATCTTTCATGCAT--TTTGATTTACCTT
AGGACCCCAAAATAGCAAATTGGTGGGTGATGTATGGTGAAGAAAAGACACCGGTTGGATATTGGCCAAGTTCACTCTTC
TCTCACTTTAAAGATAAAGGGATTTATTCATTCTGGGGCGGTTTTGTTCAAGGCCCAACAGCTTCATCAGACTCTCCACA
AATTGGTAGTGGGCATTTTGCCTCTGAAGGGTATGGAAAAGCAGCTTTTATGAGAAGCATCCAGATTGTTGACAAAAATA
ACAAGCTTGTCACTCCAAATAGTCACAAAGACCTTGTTGGAACTACTGATATAACGAAATATAGTATTGATGGTTATAAA
GTTGATAACCATGGTATGCATATGTACTATGGTGGACCAGGTAATATGGTCTGAGAGTGTACTCTACAAACTACAATAAA
TTGTGAACAGACTTCTTGAGTTACACATTTACATAATTATCGGGAGTTGTCATACATCAAAGTGTCTATTCCGATGAGTA
GTTTATCAATCCCATCACGGCAATGAGCATATGAAAAAAG-AACATGAATAGAAATTTTGAGGGACGCACTGTAATATTT
TAGTTCATCATGGATAATTGCTTGGATTTGTTTGCGCAAAACAAATTCCCATACTTATGATATATTGATGTGTTTCTAGT
GGTACAATTTGGGCGGGTACAAAGTTCTCACATGAGAAAAAAAATCTGCTATTAGACACATACATTTGATATTTTCAATT
GCTACTACAATAGAGCATTGACCTTGTAAACCTTGTTCTTCAAGAGTGAAATATATTGACCCTAAAGTTTCACTTTTTTA
TGTATGCTATTTTTTGAATTAAAAAATAAAACAGTTCAAATTCAAAATCTCCT---------------------------
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>chr3D_161
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--------------------TTGATATAGTTTTTATTTACCTTTGAGTAAACTTGCATAACAGCATGATGCCACACTAAA
CAAGTCATGCATTGATCATGATTGCCCTGGTTTCGTGCAAGTTAGCCACAATGTTGACCTTGGAGGAAGAGCACGAGCTG
TTTCAGTCTACAATGGACCACAATATGTAATAAGCATTTATATTTTCAAGGTATTCTCTCG-TCATTTAATTTTGTGATT
TCAT--ATATGTTATGCAGGTGGTGCATATGTTAATTTGCACTTATC----TTATTTGATGTTCATAACCAATTTTGGTA
GTTCACTATGATGCTAGTTGAATAATTTAAGATAGTC-AAAAGTTGTTTTGTTTCCTATCATTTCACACTCACGTACTAT
CA-TTTGACACACATTTGACAGATTATCAAGAACATGGCCTTAAACTAAACTTACATGTTACCATACCATTAAAATAATA
GAGATTCAATAAGAACTTTGAATCATGGAAAATATTTATGCTGCAAAAA--TTTAAAAATACATTTTCTTGATTAACATC
CCTTGTTATGGGGAATTGTTATGAGAAGAAATGCCTACTATATATCTTCATAGGAATAGAGACATGTGCATGCATGTTAG
AACATTTTGCAGAATTTGTATTGCGATTTTACATCCCAA-ATGTGTTCTATAGACTTCAATTTTGCATTTCATTTATTGT
AGGATCGAAAGACAAATAATTGGTGGTTGACGTATGGTAAAGACAATACACTAGTTGGATATTGGCCAAGTTCACTGTTC
ACTCACCTTAAGGATGAAGGGAACTTTCCATTCTAGGGCGGGTATGTTTTGGGTCCGACAGCTTCATCAGACTGTCTACA
AATGGGTAGTGGGCACTTTGCCCACGAAGGGTATGGAAAAGCAGAATTTATAAGAGACATCCGAATTGTTGATAAGAACA
ACAAGCTTATTTCTCCAAGTGAAAACAAAGAGCTTGGTGGCAGTAGTGATACGAGGAAATATACCATCACTGATTATGGA
TTTGATGACCATGGTGTGCATATGTACTTTGGTGGACCGGGTAATTTTGTCTGAGAATGTACCCTACAAACTACAATAAA
GTTGCTATTATATTCTCGAGTTGGACGTTTGTATAATT------------------------------------------
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>SNPs
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----S------S--------------------------------------------------------------------
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--------S-----------------------------------------------------------------------
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----------------------------------------S---------------------------------------
-----------------------------------------------------------------S--------------
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-----------------------------S--------------------------------------------------
------------S-----S-------------------------------------------------------------
--------------------S-------------------------------------------------------S---
-------------------------------------------------------S-----------------S------
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---------------------------------------------S----------------------------------
S--------------------------------------S----------------------------------------
-----------------------------------SS-------------------------------------------
-------------------------------------S------------------------------------------
----------------------------------------S---------------------------------------
---------------------------------S-----------------------------------S----------
----------------------------------------S------------S----S---------------------
---------------S----------S-SS----------------------------------------S---------
----------S-----S----------------------------------------S----------------------
--------------------S-----------------------------------------------------------
----S--S----S---------------------------------------------SS--------------------
---------S------------------------------------------------------------------S---
---------------------------S-------S-----------------------
>forward_85
----------------------------------------------------------------TCACTGGTGATAGCTT
TGCGT---------------------------------------------------------------------------
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>reverse_1117
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----------------------------------------------------------------------------CACA
ACAAGCTTGTCACTCCA---------------------------------------------------------------
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>forward_92
----------------------------------------------------------------------GTGATAGCTT
TGCGTGGTTTCT--------------------------------------------------------------------
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>reverse_2021
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--------------------TGAACTATTTGTCCACCCAACCA-------------------------------------
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