>input_sequence_86788
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-------------------------ATGCAAGCTTATGCAGACACCAAGGTCGGCACTGTTGTTAATCCGGCGCTCGGAA
CTAGCTTTGACACAGTTGAAGGAGCATATGAGTTTTACAACTTATACTCCTGGGAGACTGGCTTCGGCGTCAGGTATGAC
AAAAGCAGGCTGAACATCCATCGGATAAAATGCATGCAGGAGTTTGTGTGCGCATGCGCGGTGAGGACAATTCATTAA--
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---------------------------------------------------------
>chr1D_1_TraesCS1D01G021500
CGTTGTACGTGGGCCTCCGGTGCGCGCGGGATACGCAAGCACGTCATGTGCTACTGGGCTGATTTGAAAATAGCACATGT
AGCTGGTGGGAGGGGGTGGGCCGGTGCGATATTAATTCTGGGCCCATCTGGCGCCGCAGTCAGCTTAACACCGGAAGCGG
CGGTTTTCTTTCCCTGGCCAGCCTACTCATCCCCTTCCGGTGGTAGATGTTCGGAGCGGCGATTCGCCATGGATTGCCTC
GAGTTCTTCTTCGAGGAAGCAGAATCAGGGTGAGAACGAACCTGCCATCCCTATTTCTCTTGCCCCTGATTAGTCCAGAA
--------GCAAAATCTTTTTTACTTGGTATTATGCTCCTTGGTTCCCCGGGTTCTTCTACTCCCTCTGTTGGTTGGATC
TGACTAGTTAAGAATCCTGTATATATGTGCCACAGATTGGTTCCTAGGGTGGGCT------------------GCGGAAT
CGATGTTGTGGAGTCTATGGTTGCTTCCATCAATGAAGCTCGCGGGGCGGTCCTCTGATCTAATCTCTTCTGAACCCGTG
GATGGCGGGAGCGTCAAGGAGCAGTTCGGATGGGTGGACGGGAGTGGTGCCTCTCAT-----------------------
--------------------------------------------------------------------------------
----CAACTCAAAGGGCCCCTGCTGGACTCGACGGTAACAAACACACTCTCGTTTGTCATTTCTTTTGCTGTTAGAGCAG
AGATTCTAGGCCCATGGACTCGTCTGTGACACAAAACACACACATTGAAGAGTTCACCTATGGCTGAACAAAACAAAACA
AAATCCCCTGTCATATCATTTGATGCTATCTTGAAAACCA-TAATTGTACAACTAGGCGTCATGCT-GTCGATCGTAGTT
TTATGATTATCGATCAACAGTTAATC-------TTTTGATAGTTACCCCTGTTCATCCCGGTCTGTACAAGTAG-AAAAT
ACAGTT-AACACCTTTGT-TGGAAAAAAACTGAAGTGTTAGGATTGGCAAGGCGTCAGAAGAGAGGGATACCAAACCAAG
CAGAGTCCCTGCCCTTGAGGCTTCAATGCAAGCTTATGCAGACACCAAGGTCGGCACTGTTGTTAATCCGGCGCTCGGAA
CTAGCTTTGACACAGTTGAAGGAGCATATGAGTTTTACAACTTATACTCCTGGGAGACTGGCTTCGGCGTCAGGTATGAC
AAAAGCAGGCTGAACATCCATCGGATAAAATGCATGCAGGAGTTTGTGTGCGCATGCGCGGTGAGGACAATTCATTAATT
CAAAAATAAA--AAAAT-GTTTCCCTTGAAAG-TACGTTTTC--ATAT--TATGGACTCATATCTT-----GTTATGGAA
AAAATCTGCAGGGTAAACCATTGCACTCAAACAGCCGCTCGACAAGGTGTGGATCTGGCGCGTTGATGCGAGTGCTTAGA
TCTGATGATAAGGGGTGGTACATATGTGAACACAAAACAGAGCATAACCATGCACTCTTAGTTAACTGTATGGAAAAGCT
GCACTAGAAATCGCACCGGCACATAGATAGATATACCAGAGACTTAGTGAAACAACCAAGAGAAAACAATATAAGCCTGA
GCAAGGTTTACAGTGTGGTGGGCAG-TTTTTTTGGATCTGTGAAGGAGGTGCCATTCACAAAGAGATCTCTCAAGACTCT
TTGTGGGAAACTTAACAGAGAG--CAATCAGAAAATGATGCCAC-AAAAAAATAGAGGTGTTCAAC-GCAATGCAGGGCT
GAAGATTCTGAGTTTAAATACAATGTGCAGGTTGATATTGATGGTCTAGTCAAGACTTTGATGTGGATAACAGGGAGAAG
CATAGAGCAGTTTA-AGTGTTTTGGCGATGCTGTCACGTTTGATACAACATACAAAACTAATCTATATGACATGCCATTC
GGTCTTTTTGTCGGTGTCAACAATCACTTCCAAAGCATTATTTTTGGTGGTGTGCTGATGAACGATGAGAAAATCGA---
-CACTTTCAA--CTGGATATTTACAGAGTTCTTCCAGATGGTAGGAGCTCCACGGCCACGGACAATCCTCACATGTAT-T
T----AAAAAATGTTCCCTTCTAGTTGTGACTATTGATCTT-TTATTAAAGCATGTTGTGAATATTTTTTTCCCCTGGTA
TGTGCGGACGAAAAACGGTTGG-TTCCAGACCAAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTAGTGCAATGGAGGTTGCTATAGAAGATGTCATGCCACATACAACACATCGGTGGTG
CAAATGGCATGTGCTGAAGAAAGCAGAGGAGTCCCTTGGGCCACTGCTAGGCAAGGG
>chr3D_159
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GG
CGCTTTTCTTTCCCTCGTCAGCCCACTCATCCCCTTCCCGTGGTAGCTGTGTAGAGCGGTGATTCGCCATGGATGGCCTC
GAGTTCTTCTTTGAGGAAGCAGAATCAGGGTGAGAACGAACCTGCCGTCCCTGTTTCTCTTGCCCTTGATTAGTCCAGAA
CTCCAGAAGCAAAATCTTTTTTACTTGGTATTATGCTCCTTGGTTCCCGA-GTTCTTCTTCTCCCTCTGTTGGTTGGATC
TGACTAGTTAAGAATCTTG----TATGTGCCGCAGATTCGTTCCTAGGGTGGATGCGGGCGATGTTCTGGGTGGCGGAAT
CGACGTTGTGGAGTCTGTGGTTGCTTCCATCAATGAAGCTCGCGGGCAA-TCCTCTTATCTGATCTCTTCTGAACCCATG
GATGGCGGGAGCGGCAAGGAGCAGTTCCGAGGGGTTGACGGAA-TGGTGCCTCATACCACAACGGTGGCAATGGGGTCGT
TGGTGACTCAAACGATATGGCCGCTCAGAATACGACCACTGCATCTATGGGAGAGGAGGGGGATGCCGAGGGTGCCGTCG
TCGACAACTCAAAGGGGTCCTGTTGGACTCGACGGTAACAAACACACACTCATTTATCATTTCTTTTGCTGTTAGAGCAG
AGATTCTAGGCCCCTGGACTCG-------CACAAAACACACATATTGAAGAGTTCACCTATGGATGAACAAAC-AAA--A
AAATCACCTGTCATATCATTTGATGCTATCTTGAAAACCAA-AATTTTACAACTAGGTGTCATGCTGGTAGATCATAGTT
TTATGATTTTGTATCAATGATCAACATTAATCTTTTGATAT--TTACCCGGTTCATCCCGGTCTGTACAAGTAG-AAAAT
ACAGTT-AACACCGTTTT-TG--AAAAAACTGAAGTGTTAGGATTGGCAACGCGTCAGAAGAGAGGGATGCCAACCCAAG
CAGAGTTCCTGCCCTTGAGGCTTTAATGCGAACTTACGCAGACACCAAGGCCGGCACTGTTGTTAATCCGGCACTCGGAA
CTAGCTTTGACACAGTTGAAGCAGCATATGAGTTTTACAACCTAAACTCCTGGGAGACTGGCTTTGGCGTCAGGTATGTC
AAAAGCAGGCTAAACGTCCATCGGAAAAAATGCATGCAGGAGTTTGTGTGCGCATGTGCACTGAGGATGATTCATTAATT
AAAAAATAG---AAAAT-GTTTCTCTTGCAAG-TACTTTTTC--ATAT--TATGGTCTCATATCTT-----GTTCTGGAA
AAAATCTGGAGGAT--ACCATTCCAATCAAACAGCCGCTCGACAAGGTGTGGATGTGGCGCGTTGATGCGGGTGCTTAGA
TCTGATAATGAGGGGTGGTACATATGTGAACACAAAACAGAGCACAACCATGCACTCTCAGTTAACTATATGGAAAAGCT
GCACTGAAAATTGCTCCGACACATAGATAGATATA---------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr5D_670
ATTCTAGCT-----------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------CCCCTGGACTCGCCTGTAACAAACACACACA--AATTAAGAGTCTGCCCATGGATGAACAGAAGAAA--A
AATTCGTCTATCATCACGTTTCATACTATCTTGAAACCATATTTTTTTACATCTGGGTGTCATGCTGGTAGATTGTAGTT
TTATGATTATGTATCAATTATCAACATTAATTTTTTTGAGAAATTACCCTGTCCATCTCGGTCTGTGCCAGTAAAAAAAT
ACAGTT-AACACCATTTTGT------AAACTGAAGTGTTAGGATTGGCAACGCGTCTGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCCTGCCCTTGAGGCTTCAATGCGAGCTTGTGCAGACACCAAGACCAGCACTGTTGTTAATCCGGCGCTCGGAA
CTAGCTTTGACACAGTTGAAGAAGCATATGAGTTTTACAACCTATACTCCTGGGAGACTGGCTTTGGCGTCAGGTATGCC
AAAAGCAGGCTGAATGTCCAT---AAAAAATGCATCCAAGAGTTTGTGTGCGCATGTGCGGTGAGGATGATTCATTCAAT
AATAAA--------AAT-GTTTCCCTTGCAAG-TACTTTTTC--ATAT--TATGGTCTCATTTTCTTGTTCGT----GAA
AAATTTTGCAGGGCAGGCCATTGCAGTCAAACAG----TCGACAAGGTGTGGATGTGCTGCGTTGATGCGGGTGCTTAGA
TCTGATGATAAGGGTTGGTACATATGTGAACACAAAACCGAGCACAACCATGCACTCTTGGTTAACCGTATGGAAAAGCT
GGACTGGAAATCGCACCGACACATAGATA----TACTAGAGACTTGGTGAAGTAGCTAAGGGAAAACAATATAAGCTTGA
GCAAGGTTTACAGTGTGGTCGGCAG-TTTTTTTGGATCTGTGAAGGAGGTGCCATTCACGAAAAGATCTCTCAAAACTCT
TTGTGGAAAACTTGATATAGAGAGCAATTAGAAAATGATGCCACAAAAACAATAGAGGTATTCAAC-GCAATGC-GGGCT
GAA--TCCTGAGTTTAAATACAGTGTGCAAGTTGACACTGATGGTCGAGTCAAGACTTTGATGTAGACAACAGGGAGAAG
CATTGAGCAGTTTA-AGTGCTTTTGTGATGCTGTCACATTTGATACCACTTACAAGACTAATCTATATGACATGCCATTT
GGTATTTTTGTTGGTGTAAGCAATCACATCCAAAGCATTATTTTTGGTGGTGTGATGATGAGCGATGAGAAAATCGA---
-CACTTTCAA--GTGGATATTTACATAGTTCTTCCAGATGATAGGAGCCCCACCGCCATAGACGATCCTCATAGGTATGT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTCATGCGATGGAGGTTGCCATAGAAGATGTCATGCCACATAGAACGCATCGGTGGTG
CAAATGGCATGTGCTGAAGAAAGCAAAAGAGTACGTTGGGGCACTGCTAGGCAAG--
>chr6B_670
ATTCTAGCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------CCCCTGGACACGCCTGTAACAGACACACACA--AATTAAGAGTCTGCCCATGGATGAACAGACGAAA--A
AATTCGTCTATCATCGCGTTTCATACTATCTTGAAACCAT-TTTTTTTACAACTTGGTGGCATGCTGGTAGATTGTAGTT
TTATGATTATGTATCAATTATCAACATT---TTTTTTGAGAAATTACCCTGTCCATCTTGGTCTGTGCCAGTAGAAAAAT
ACAGTT-AACACCATTTTGT------AAACTGAAGTGTTAGGATTGGCAACGCGTCTGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCCTGCCCTTGAGGCTTCAATGCGAGCTTGTGCAGACACCAAGACCAGCACCGTTGTTAATCCGGCGCTCGGAA
CTAGCTTTGACACATTTGAAGAAGCATATGAGTTTTACAACCTATACTCCTGGGAGACTGGCTTTGGCGTCAGGTATGCC
AAAAGTAGGCCGAACTTCCAT---AAAAAATGCATCCAGGAGTTTGTGTGCGCATGTGTGGTGAGGATGATCCATTCAAT
AATAAA--------AAT-GTTTCCCTTGCAAG-TACTTTTTC--ATAT--TATGGTCTCATTTTCTTGTTCAT----GAA
AAAATTTGTAGGGCAAGCCATTGCAGTCAAACAG----TCGACAAGGTGTGGATGTGCCGCGTTGATGCGGGTGCTTAGA
TCTGATGATAAGGGTTGGTACATATGTGAACACAAAACCGAGCACAACCATGCATTCTTGGTTAACTGTATGGAAAAGCT
GGACTGGAAATCGCACCGACACATAGATA----TACTAGAGACTTGGTGAAGTAGCTAAGGGAAAACAATATAAGCTTGA
GCAAGGTTTACAGTGTGGTCGGCAA-TTTTTTTGGATCTGTGAAGGATGTGCCATTCACGAAAAGATCTCTCAAAACTCT
TTGTAGAAAACTTGATAGAGAG--CAATCAGAAAATGATGCCACAAAAACAATAGAGGTATTCAAC-GCAATGC-GGGCT
GAA--CCCTGAGTTTAAATACAGTGTGCAAGTTGACACTGATGGTCGAGTCAAGACTTTGATGTGGACAACAGGGAGAAG
CATTGAGCAGTTTA-AGTGCTTTTGTGATGCTGTCACATTTGATACCATTTACAAGACTAATCTATATGGCATGCCATTT
GGTCTTTTTGTTGATGTAAACAATCACTTCCAAAGCATTATTTTTGGTGGTGTGATGATGAGCGATGAGAAAATCGA---
-CACTTTCAAAAGTGGATATTTACATAGTTCTTCTAGATGATAGGAGCCCCACAGCCATAGACGGTCCTCACAGGAAT-T
----AAACAAATGTTCTCTTCTAGTTGTGAGTGTTGATCTT-CTGGTTAAGCATCATATGAAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATAGAAGATGTCATGCCACATACAACACATTGGTGGTG
CAAATGGCATGTGCTGAAGAAAGCAAAAGAGTACGTCGGGGCACTGCTAGGCAAG--
>chr1A_670
ATTCTAGCT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CCCCTGGACTCGCCTGTAACAAACACACACA--AATTAAGAGTCTGCCCATGGATGCACAGAAGAAA--A
AATCCGTCTATCATCGCGTTTCATACTATCTTGAAACCAT-TTCTTTTACAACTTGGTGGCATGCTGGTAGATTGTAGTT
TTATGATTATGTATCAATTATCAACATT---TTTTTTGAGAAATTACCCTGTCCATCTCGGTATGTGCCAGTAGAAAAAT
ACAGTT-AACACCATTTTGT------AAACTGAAGTGTTAGGATTGGCAACGCGTCTGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCCTGCCCTTGAGGCTTCAATGCGAGCTTGTGCATACACCAAGACCAGCACCGTTGTTAATCCGGCGCTCGGAA
CTAGCTTTGACACAGTTGAAGAAGCATATGAGTTTTACAGCCTATACTCCTGGGAGACTGGCTTTGGCGTCAGGTATGCC
AAAAGTAGGCCGAACTTCCAT---AAAAAATGCATCCAGGAGTTTGTGTGCGCATGTGCGGTGAGGATGATCCATTCAAT
AATAAA--------AAT-GTTTCCCTTGCAAG-TACTTTTTC--ATAT--TATGGTCTCATTTTCTTGTTCAT----GAA
AAAATTTGCAGGGCAAGCCATTGCAGTCAAACAG----TCGACAAGGTGTGGATGTGCCGTGTTGATGCGGGTGCTTAGA
TCTGATGATAAGGGTTGGTACATATGTGAACACAAAACCGAGCACAACCATGCATTCTTGGTTAACTGTATGAAACGGCT
GGACTGGAAATCGCACCGACACATAGATA----TACTAGAGACTTGGTGAAGTAGCTAAGGGAAAACAATATAAGCTTGA
GCAAGGTTTACAGTGTGGTCGGCAA-TTTTTTTGGATCTGTGAAGGATGTGCCATTCACGAAAAGATCTCTCAAAACTCT
TTGTAGAAAACTTGATAGGGAG--CAATCAGAAAATGATGCCAC-AAAAAAATAGAGGTATTCAAC-GCAATGC-GGGCT
GAA--TCCTAAGTTTAAATACAGTGTGCAAGTTGACACTGATGGTCGAGTCAAGACTTTGATGTGGACAACAGGGAGAAG
CATTGAGCAGTTTA-AGTGCTTTTGTGATGCTGTCACATTTGATACCACTTACAAGACTAATCTATATGGCATGCCATTT
GGTCTTTTTGTTGATGTAAACAATCACTTCCAAAGCATTATTTTTGGTGGTGTGATGATGAGCGTTGAGAAAATCGT---
-CACTTTCAA--GTGGATATTTACATAGTTCTTCTAGATGATAGGAGCCCCACAGCCATAGACGATCCTCACAGGCAT-T
----AAACAAATGTTCTCTTCTAGTTGTGAGTGTTGATCTT-CTGGTTAAGCATCATATGAAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ATAGAAGATGTCATGCCACATACAACGCATCGGTGGTG
CAAATGGCATGTGCTGAAGAAAGCAAAAGAGTACGTCGGGGCACTGCTAGGCAAG--
>chr7D_837
--------------------------------------------------------------------------------
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-----------GATCAACAT------TA---TTTTCTCATAAAACCCCTTGTTTATATCAGTCTTGACAAGTAG-AGAGT
ATATTTTAACACCGTTTTGTGTGGG-GAAATGCAGTGTTAGGATTGGCAACGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCCTGCCCTAGAGGCATCGATGCGAGCTTATGCAGACAACAAGGTTGTCACTGTTGTTAACCCGGCGCTCGGAA
CTAGCTTTGACATAGTTGAAAAAGCATATGAGTTTTACAACCTATACTCCTGGGAGACTGGGTTTGGCGTTAGGTATGCC
AAAAGCAGGCTGAACGTCCATCGGGAAAAATGCATGCATGAGTTTGTGTGCGCGTGTGCGGCAAGGATGATTCATTAATT
CAAAAAAGA---TAAAT-GTTTCCCGTTCCTACTACTTTTTC--ATTTTGTATGCTCTCATATCTT-----AT----GAG
AAACTATGCAGGGCAAGCCATTGCAATCGAACAGCCGCTCGACGAGATGTGGATTCCCCGCATTGATGCAGGTTCTTAGA
TGGGATGATAAAGGATGGTACATATGTGAACACAAAGCAGAGGACAACCATGCAGTCTCAGTTAACTGTATGGAGAAGCT
GCACTGGAAATCGCACCGACACATAGATAGATACACCAGAGACTTGGTGAAACAGCTGAGAGAGAACAATATAAGCCTGA
GCAAGGTTTACAGTGTGGTTGGCAG-TTTTTTTGGATATGTGAAGGAGGTGCCATTCACAAAGAGATCTCTCAAAACTCT
TTGTGGAAAACTTAACAGAGAG--CAGTCGAAAAACGATGCTACAAAAACAATAGAGGTGTTCAAC-GCAATGC-GGGCT
GAAGATCCTGAGTTCAAATACAGTCTGCAGGTTGATAGTGATGGTTGAGTCAAGACTTTGACGTGGACAATAGGGAGAAG
CATCGAGCATTTTA-AGTGTTTTGGCAATGCTGTCACGTTTGATACGACATGCAAAACTAATCTATACGACATGCAGTTT
GGCCTCTTCGTTGGTGTCAACAATCACTTCCAAAGCATTATTTTTGGAGGTGTGCTAATGAGCGATGAGAAAATTGACAC
ACACTTTCAA--GTGGTTATTCACATAATTCTTTCAGATGATAGGAGCGCCACAACCACGCACAATCCTCATAGGTAT-T
TTGAAAAAAAATGTTCTCATCTATTTATGAGTGTTGATCTT-CCTTTTAAGCTTGCTGTGAAAATGTTTTCCTCCTAGAA
TGTACTGACAGAAAAATGTTGT-TTTCAGACCAAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTCGTGCAATGGAGGTTGCCATAGAAGATGCCATGCCACATACAACACATCGGTGGTG
CAAATGGCATGTGTTGAAGAAAGCAAAAGAGTGCCTTGGGCCACTGCTAGGCAA---
>chr6B_866
CCTGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TATATCGGTCTGTACAAGTAC-AGAGT
ACATTT-AACACCAATTTGTG-GGG-AAAATGCAGTGTTAGGATTGGCAAAGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCTTGCCCTCGAAGCTTCAATGCGAGCTTATGCAGACAACAAGGTTGGCACTGTTGTTAACCCGGCGCTCAGAA
CTAGATTCGACACAGTTGAAGAAGCGTGTGAGTTTTACAACCTATACTCCTGGGAGACTGGGTTTAGCGTCAGGTATGCC
AAAAACAGGC--------------------TGCATGCAGGAGTTTGTGTGCGCGTGTGCAGTGATGATGATTCATTAATT
CAAAAAAGA---GAAAT-GTTTCCCCACACCTACT-TTTTTCATTTTT--TATGCTCTCATAT--------CTTATGGAA
AAACTCAACAGGGCAAGCCATTGCAATCGAAAAGCCGCTCGACGAGGTGTGGATGCCCCGTGTTGATGCGGGTGCTTAGA
TCTGATGATAGAGGATGGTACATATGTGAACACAAAGCAGAACACAACCATGCAGTCTCAGTTAACTGTATGGAGAAGCT
GAACTGGAAATCGCACCGGCACATAGATAGATACATCAGAGGCTTGGTGAAACAGCTGAGAGAAAACAATGTAAGCCTGA
GCAAGGTTTACAGTGTGGCTGGCAGTTTTTTTTGGATCTGTGAAGGAGGTGCCATTCACAAAGAGATCTCTCAAAACTCT
TTGTGGAAAACTTAACAGAGAG--CAGTCAGAAAATGATGCCACAAAAACAATAGAGGTGTTCAAC-GCAATGC-GGGCT
GAAGATCCTGAGTTCAAATACAGTGTGCAGGTTGATTGTGATGGTTGAGTCAAAACTTTGATGTGGACAACAGGGAGAAG
CAACGAGCAGTTTAAAGTGTTTTAGCGATACTGTCACGTTTGATACGACATACAAAACCAATCTATATGACATGCCATTT
GGCCTCTTCATTGGTGTCAACAATCACTTCCAAAGCATTATTTTTGGAGGTGTGCCGATGAGCCATGAGAAAATCGA---
-CACTTTCAA--GCGGATATTCATACAGTTCTTCTAGATGATAGGAGCGCCACAACCACGCAAAATCCTCATAGATAT-T
T---AATAAAATGTTCTCGTCTAGTTACGAGTGTTGATCTT-CTTTTTAAGCTTGCTGTGAAAATGTTTTCCTCCTGGAA
TGTGCTGACAGAAAACTGTTGG-TTTCAGACCAAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTCGTGCAATGGAGGTTGCCATAGAAGATGTCATGCCACATACAA-------GTCGTG
CAAATGGCATGTGTTGAAGAAAGCAAAAGAGTGCCTTGGGCCACTGCTAGGCAAGGG
>chr6B_866
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CCTGTTTATATCGGTCTGTACAAGTAC-AGAGT
ACATTT-AACACCAGTTTGTG-GGG-AAAATGCAGTGTTAGGATTGGCAAAGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCTTGCCCTCGAAGCTTCAATGCGAGGTTATGCAGACAACAAGGTTGGCACTGTTGTTAACCCGGCGCTCAGAA
CTAGATTCGACACAGTTGAAGAAGCGTGTGAGTTTTACAACCTATACTCCTGGGAGACTGGGTTTAGCGTCAGGTATGCC
AAAAACAGGC--------------------TGCATGCAGGAGTTTGTGTGCGCGTGTGCAGTGATGATGATTCATTAATT
AAAAAAAGA---GAAAT-GTTTCCCCACACCTACT-TTTTTCATTTTT--TATGCTCTCATAT--------CTTATGGAA
AAACTCAACAGGGCAAGCCATTGCAATCGAAAAGCCGCTCGACGAGGTGTGGATGCCCCGTGTTGATGCGGGTGCTTAGA
TCTGATGATAGAGGATGGTACATATGTGAACACAAAGCAGAACACAACCATGCAGTCTCAGTTAACTGTATGGAGAAGCT
GCACTGGAAATCGCACCGGCACATAGATAGATACATCAGAGGCTTGGTGAAACAGCTGAGAGAAAACAATGTAAGCCTGA
GCAAGGTTTACACTGTGGCTGGCAGTTTTTTTTGGATCTGTGAAGGAGGTGCCATTCACAAAGAGATCTCTCAAAACTCT
TTGTGGAAAACTTAACAGAGAG--CAGTCAGAAAATGATGCCACAAAAACAATAGAGGTGTTCAAC-GCAATGC-GGGCT
GAAGATCCTGAGTTCAAATACAGTGTGCAGGTTGATTGTGATGGTTGAGTCAAAACTTTGATGTGGACAACAGGGAGAAG
CATCGAGCAATTTAAAGTGTTTTAGCGATATTGTCACGTTTGATACGACATACAAAACTAATCTATACGACATGCCGTTT
GGCCTCT-CGTTGGTGTCAACAATCACTTCCAAAGCATTATTTTTGGAGGTGTGCCGATGAGCCATGAGAAAATCGA---
-CACTTTCAA--GTGGATATTCATAGAGTTCTTCTAGATGATAGGAGCGCCACAACCACGCAAAATCCTCATAGGTAT-T
T---AATAAAATGTTCTCGTCTAGTTACGAGTGTTGATCTT-CTTTTTAAGCTTGCTGTGAAAATGTTTTCCTCCTGGAA
TGTGCTGATAGAGAACTGTTGG-TTTCAAACCAAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTCGTGCAATGGAGGTTGCCATAGAAGATGTCATGCCACATACAA-------GTGGTG
CAAATGGCATGTGTTGAAAAAAGCAAAAGAGTGCCTTGGGCCACTGCTAGGCAAGGG
>chr2D_877
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CGGTCTGTACCAGTGG-GAATT
ACATTT-AACACCGATTT-TG-GGG-AAAATGCAGTGTTAGGATTGGCAACGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAG-GTCCCTGCCCTCGATGCTTCAATGCAAGCTTATGCAGACAACAAGGTTGGCACTGTTGTTAACCCGGCGCTCGGGA
CTAGCTTTGACACAGTTGTAGAAGCATATGAGTTTTACAACTTATACTCCTGGGAGACTGGTTTTGGCGTCAGGTATGCC
AAAAGCAGGCTGAACGTCCATCGGAAAAAATGTATGCAGGAGTTTGTGTGCGCGTGTGCGGTGAGGATGATTCATTAATT
CAAAAAAGA---GAAATTGTTTCCTCACACCTAAT-TTTTTC--CTAT--TATGTTCTCATAT--------GTTATAGAA
AAACACTGCAGGGCAAGCCATTGCAATCGAATAGCCGCTCGACGATGTGTGGATGCCCTGCGTTGATGCGGATTCTTAGG
TCTGATGATAAAGGATGGTACATATGTGAGCACAAAGCAGAGCACAACCATGCACTCTCAGTTAACTGTATGGAGAAGCT
GCACTGGAAATCACACTGGCACATAGATAGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr6D_877
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CGGTCTGTACCAGTGG-GAATT
ACATTT-AACACCGATTT-TG-GGG-AAAATGCAGTGTTAGGATTGGCAACGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAG-GTCCCTGCCCTCGATGCTTCAATGCAAGCTTATGCAGACAACAAGGTTGGCACTGTTGTTAACCCGGCGCTCGGGA
CTAGCTTTGACACAGTTGTAGAAGCATATGAGTTTTACAACTTATACTCCTGGGAGACTGGTTTTGGCGTCAGGTATGCC
AAAAGTAGGCTGAATGTT----GGAAAAAATGTATGCAGGAGTTTGTGTGCGCGTGTGCGGTGAGGATGATTCATTAATT
CAAAAAAGA---GAAATTGTTTCCTCACACCTAAT-TTTTTC--CTAT--TATGTTCTCATAT--------GTTATAGAA
AAACACTGCAGGGCAAGCCATTGCAATCGAATAGCCGCTCGACGAGGTGTGGATGCCCTGCGTTGATGCGGATTCTTAGG
TCTGATGATAAAGGATGATACATATGTGAGCACAAAGCAGAGCACAACCATGCACTCTCAGTTAACTGTATGGAGAAGCT
GCACTGGAAATCACACTGGCACATAGATAGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr7B_926
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGCAGTGTTAGGATTGGCAACGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCCTGCCCTCGAGGCTTCAATGAGAGCTTATGCAGACAACAAGGTTGGCACGGTTGTTAACCCGGCAATCGGAA
CTAGCTTTGACACGGTTGAAGAAGCGTATGAGTTTTACAACCTATATTCCTGGGAGACATGGTTTGGCGTTCGGTATGCC
AAAAGCAGGTTGAACGTCCATCGGAAAAAGTGCATGCAGGAGTTTGTATGCGCGTGTGCGGT-ATGATGATTCATTAATT
CAGACAAGCACTAAAAA-GTTTCCCCGCCACTGCT-CTTTCAAATTTT--TACGATCCCATAA--------TACATCAAA
AACATGTGCAGGGCAAGCCATTGCAATCGAACAGCCGCTCGACGAGGTGTGGATGCCCTGCGTTGATGCGGGTGCTTAGA
TCAGATGATAAAGGGTGGTACATATGCGAACACAAAGCAGAGCACAACCATTCTGTATCGGTTAACTGTATGGAGAAGCT
GCACTGGAAATCACACAGGCACATAGATAGATACACTAGAGACTTGGTGAAACAGCTAAGAGAAAACAATATAAGCCTGA
GCAAGGTTTATAGTGTGGTTGGCAG-TTTTTTTGGATCTGTGAAGGAGGTGCCATTCACAAAGAGATCTCTCAAAACTCT
TTGTGGAAAACTGAATAGAGAG--CAGTCAGAAAATGATGCTACAAAAACAATAGAGGTGTTCAAT-GCCATGC-GGGCT
GAAGATCCTGAGTTCAAGTACAGTGTGCAAGTTGATAGTGATGGCCGAGTCAAGACTTTGATGTGGACAACAGGAAGAAG
CATAGAGCAATTTA-AGTGTTTTGGAGATGTTGTAACGTTTGATACGACATACAAAACAAATCTATACGACATGCCATTT
GGCCTCTTTGTTGGTGTCAACAATCACTTCCAAAGCATTATATTTGGAGGGGTGCTGATGAGCGATGAGAAAATTGA---
-AACTTTCAA--GTGGATATTCACAGAGTTTTTTCAGATGATAGGAGCGCCACAACCACGCACAATGCTCACAGGTGAAT
A---AA-TAAATGATCTCATCTGTTTAGTGTTGTTGACCTTTCCTTTTAGGATTGGTCTGAAAACGTTTTCATCCTGTAA
TTTGCTGACAGAGAATTGTTGTTTTTCAGACCAAG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTCGTGCAATGGAGGTTTCCATAGAAGATGTCATGCCGCATACAACACATCGGTGGTG
CAAATGGCATGTGCTGAAGAAAGCAAAAGAGTGCCTTGGGCCACTCTTAGGCAAGGG
>chr6A_929
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---------------------------------AGTGTCAGGATTGGCAACGCGCCAGAAGAGAGGGATGCCAACCCAAG
CAGAGTCCCTGCCCTCGAGGCTTCAATGAGAGCTTATGCGGACAACAAGGTTGGCACAGTTGTTAACCCCGCGCTCGGAA
CTAGCTTCGACACGGTTGAAGAAGCGTATGAGTTTTACAACCTATATTCCTGGGAGACGGGGTTTGGCGTTTGGTATGCC
AAAAGCAGGTTGAATGTCCATCAGAAAAAGTGCATGCAGGAGTTTGTATGCGCGTGTGCG-TGAGGATGATTCATTAATT
CAGACAACA---CAAAA-GTTTCCCCGCCACTACT-CTTTCAAAATTT--TATGCTCTCATAA--------CACATCGAA
AACCTATGCAGGGCAAGCCATTGCAGACGAACAGCCGCTCAACGAGGCGTGGATGCCCTGCGTTGATGCGGGTGTTTAGA
TCGGATGATAAAGGGTGGTACATATGCGAACACAAAGCAGACCACAACCATGCAGTCTCAATTAACTATATGGAGAAGCT
GCATTGGAAATCCCACAGGCACATAGATAGATACACCAGAGACTTGGTGAAACAGCTAAGAGAAAACAATATAAGCGTGA
GCAAGGTTTAT-GTGTGGTTGGCAG-TTTTTTTGGATCTATGAAGGCGGTGCCATTCACAAAGAGATCTCTCAAAACTCT
TTGTGGAAAACTGAATAGAGAG--CAGTCAGAAAACGATGCTACAAAAACAATAGAGGTGTTCAAC-ACAATGC-GGGCT
GAATATCATGAGTTCAAGTACAGTGTGCAAGTTGATAGTGATGGCCGAGTCAAGACTTTGATGTGGTCAACAGGGAGAAG
CATTGAGCAATTTA-AGTGTTTTGGCGATGCTGTCACGTTTGATATGACATACAAAACTAATCTATACGACATGCCATTT
TGCCTCTTCGTTGGTGTCAACAATCACTTTCAGAGCATTATATTTGGAGGGGTGCTGATGAGCGATGAGAAAATCGA---
-CACTTTCAA--GCGGATATTCACAGAGTTCTTTCATATGATAGGAGCGCCACAACCATGCACAATGCTCACAGGTAAAT
A---AA--AAATGATCTCATGTGTTTAGTGCTGTTGATCTTTCCTTTTAGGATTGCTATGAAAATGTTTTCATCCTGGAA
TATGCTGACAGAGAATTGTTGTTTTTCAGACCAAG---------------------------------------------
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----------------------CTCATGCAATGGAGGTTGCCATAGAAGATGTCATGCCGCATACAACACATCGGTGGTG
CAAATGGCATGTGTTGAAGAAAGCAAAAGAGTGCCTTGGGCCACTGCTAGGCAAGGG
>chr3B_1280
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-----------------------------------------------------------------------------GAA
AACATGTGCAGGGCAAGCCATTGCAGTCGAACAGCCGCTCGACGAGGTGTGGATGCCCTGCGTTGATGCGGGTGCTTAGA
CCAGATGATAAAGGGTGGTACATATGCGAACACAAAGCAGAGCACAACCATGCTGTATCAGTTAACTGTATGGAGAAGCT
GCACTGGAAATCGCACATGCACATAGATAGATACACTAGAGACTTGGTGAAACAGCTAAGAGAAAACAATATAAGCCTGA
GCAAGGTTTATAGTGTGGTTGGCAG-TTTTTTTGGATCTATGAAGGAGGTGCCATTCACAAAGAGATCTCTCAAAACTCT
TTGTGGATAACTGAATAGAGAG--CAGTCAGAAAATGATGCTACAAAAACAATAGAGGTGTTCAATCGCAATGC-GGGCT
GAAGATCCTGAGTTCAAGTACAGTGTGCAAGTTGATAGTGATGGCCGAGTCAAGACTTTGATGTGGACAACAGGGAGAAG
CATAGAGCAATTTA-AGTGTTTTGGAGATGCTGTCACGTTTGATACGACATACAAAACTAATCAATACGACATGCCATTT
GGCCTCTTCGTTGGTGTCAACAATCACTTCCAAAGCATTATATTTGGAGGGGTGCTGATGAGCGATGAGAAAATCGA---
-CACTTCCAA--GTGGATATTCATAGAGTTCATTCAGATGATAGGAGCGCCACAACCACGCACAATGCTCACAGGTAAAT
A---AAAAAAATGATCTCATCTGTTTAGTGTTGTTGAACTTTCCTTTTAGGATTGGTCTGAAAATGTTTTCATCCTGTAA
TTTGCTGACAGAGAATTGTTGTTTTTCAGACCAAG---------------------------------------------
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----------------------CTCGTGCAATGGAGGTTGCCATAGAAGATGTCATGCCGCATACAACACATCGGTGGTG
CAAATGGCATGTGTTGAAGAAAGCAAAAGAGTGCCTTGGGCCACTCTTAGGCAAGGG
>chr4B_1341
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----------------------------------------------------------CGCGTTGATGAGGGTTCTTAGG
TCTGATGATAAAGGATAGTACATATGTGAGCACAAAGCAGAGCACAACCATGCACTCTCAGTTAACTATATGGAGAAGCT
GCACTGGAAACCGCACCAACACATAGATAGATACACCAGAGACTTGGTGAAACAGCTGAGAGGGAACAATATAAGCCTGA
G-AAGGTTTATAGCGTGGTTGGAAG-TTTTTTAAGATCTGTGAAGGAGGTGCCATTCATAAAGAGGTCTCTCAAAACTCT
TTGTGGAAAACTTAAGAGAGAG--TAATAGGAGAAAGATGCCATAAAAACAATAGAGGTTCTCAAT-GCAATGT-GGGTT
GAAGATCCTGAGTTTAAATACAATGGGCAGGTTGATCGTGATGGTCGAGTCCAGACTTTGATGTGGACAATTGGGGGAAG
CATCGAGCAGTTTA-GGTGTTTTGGCGATGTTGTCACGTTGGATACCACATACAAAACTAATCTATATGACATGCCATTT
GGTCTCTTCGTTGGTGTCAACAATCACTTCCAAAGCATTATTTTTGGAGGTGTGCTGATGTGCAATAAGAAAATCGA---
-CACCTTCAA--GTGGATAATTACAAAGTTCTTCCAGATGATAGGAGCTCCACAGCCGCGCACAATCCTCACAGGTAT-T
A---AG-AAAATGTTATCGTGTAGTTACAAGTGTTGATCTT-CTTTTTAAGCATGATGTAAAAAGGCTTTCCTCCTGGTA
TGTGCTAACAAAAAACTGTTGC-TTTTAGACCAAG---------------------------------------------
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----------------------CTCGTGCAATGGAGGTTGCCATAGAAGATGTCATGCCACATACAACACATCGGTGGTG
CAAATGGCATGTGTTGAAGAAAGCAAAAGAGTGTCTTGGGCCACTGCTAGGCAAGG-
>chr6B_1692
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--------------TAAATACAATGTGCAGGTTGATTGTGATGGTCGAGTCAAGACTTTGATGTGGACAATTGGGGGAAG
CATCGAGCAGTTTA-AGTGTTTTGGCGATGCTGTCACGTTGGATACCACATACAAAACTAATCTATATGACATGCCATTT
GGTCTCTTCGTTGGTGTCAACAATCTCTTCCAAAGCATTATTTTTGGAGGTGTGCTGATGTGCGATAAGAAAATCGA---
-CACCTTCAA--GTGGATATTTACAGAGTTCTTCCATATGATAGGAGCTCCACAGCCGCGCACAATCCTCACAGGTAT-T
A---AAAAATGTTAT------------CGAGTGTTGATCTT-CTTTTTAAGCATGATGTAGAAAGGCTTTCCTCCTGGTA
TGTGTTGACAAAAAGCTGTTGG-TTTTAGACCAAG---------------------------------------------
--------------------------------------------------------------------------------
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----------------------CTCGTGCAATGGAGGTTGCCATAGAAGATGTCATGCCACATACAACACATCGGTGGTG
CAAATGGCATGTGTTGAAGAAAGCAAAAGAGTGTCTTGGGACACTGCTAGGCAAGGG
>SNPs
-S-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--S------------S-S-----S--------------S-------S---SSS------S--------------S-----
-----------S----------------------------------S-----S------------S--------------
------------------------------------------------SSS--------S--------------------
----------------S--SSSS--------S------S-------------SSS-------------------------
---S------------S-----------------------------SSSS------S----S---------------S--
-------------S-------------S--S----S-----S-S---------SS-S-----------------------
--------------------------------------------------------------------------------
----------------SS----S------------------------S---S---S------------------------
-------------S--------S----S--------------S--------------------S---------S---SS-
-----S----------------------------------------S----------S-----------S----------
----------S--------S-S--SS---------------SS-S-----------------------------------
-------------S--S----SS---------------------------S------------------S----S-----
--------------------------------------------------------------------------------
---------------------S------------------------------------------S-------------S-
---------------S---------S------------------------------S----------SS-----------
------------------------------------S------------------S------------------------
-------------------------S----------------------------S---------------S---------
--------------------------------------------S-----------------------------------
-----S---------------------------------------S--------S-S-----------------------
-------------------S------------------------------------------------------S-----
------S-------------------------------------------------------------------S-----
------S------------------------------S--------S--------------------S------------
----------------------------------------------S--------------------------------S
-----------S-------------------------------------------------S------------------
------------S---------------------------S------------S-------------------S------
----------------S---------------S---------S-S--S-------S------S--S----S-S-------
-----S---S------S--------S------------------------------------------------------
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------------------------S----------------S--------------------------------------
-------------------------S-S----S------------------------
>forward_454
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----------------------------------GATTGGTTCCTAGGGTGGGC--------------------------
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>reverse_1606
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-----AGAAATCGCACCGGCACATA-------------------------------------------------------
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