>input_sequence_86746
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----------------------------------------ATGGCTCCTTCGTGCAAGAGCTCCTTCGGCTACAATGGAA
GGCAACGGTGCCCGTCCGACAGCTACGGCGCGGTGTTCCAGCACACCGGCAACCAGTATTGGCTCGACACTTTCACGTTG
GCCAACATTGTCGCCCGTGCGTACGACGTCGCAGTGTGGAGTCTTGCCC---CCTGCTCGAAGCTCAG---CCTGGAGAG
TGGGACTTGGGCGGATGTGTAG----------------------------------------------------------
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>chr5A_1_TraesCS5A01G371300
AGGGTTTATATATCTTAAAAATAATAATTTTCGTACCAATTCTGTCATGAAATAAAAATGTGTGTTCTTGATATTTTTTC
TAAGTGTTAAAATCTTTTAAAAAGTGCCCACATATTTTCTTAGATTTTTTTGTGAATTTTATAAAATGATGGTGCAATTT
TCTAAGTATTCATTTATTTTCAAAAACTTCATACAATTAATAGAAGGTTTTCACTTATGTTTTTAAAGCTTTCTCACAAT
TTGAAAACATTCATACAATTTAATAAGTTAATGCATTTTAAAAAATAAATATTTATTTAAAATGAGATTCACGAGTTAGA
AAAATGTTAATAACTTTTTTCAATATGTTCTTTGTATTTTATCAAGTATTGATATATTTTTTAAATATTCACGTATTTTC
AGAAAGACATTTTTAAAAATAAATACCAAAAAAAGGTAAAAAAAAAGGAAACTTGAAGAAGAAAAGGAAAAAAATGACAT
TCCCCTCAATAAATATTAATACATAAATGACATGAAAACAATATCTTTTAAGGAAAACCACCGAAGAGCATCTCCAACAG
CAGCCCTATAAATTATAAGAAGGTATTTAGAGCACAAGATGGCAAAAAACACCCTCAAATAGTTGCCAATTCCTAACAGT
CTTGCAAAAAAATTAGGGCATCCCAAAAAAGGGGGGCACCTCGTGCATCAAATATGTGTCAGGCAACCGGCTGCCGCAAA
ACAAAAACGGCAGCCCACCCACCCGCAACCGCTCGCTCAACCACCCGCAACCACACTCCTCCCCTCCACCGGTGTCAGAT
CTGTGGCTACCGCACCCGCCTACGGCCCGATTTGCTTCCCCGCCGCGTCCCACAGCCGCCGGTCTAAGGAATCACACCAC
CGCGCCCGTATTGCTGCCCAATCCCCCTGCCGACCCCGACGCTTTTCCAGAGCCGCCGCGTCCTCTCCGGCCCGCCGCCG
CCATTTTTTATCGAGGCCGCTTCCTCTCCAGCCCGCCGCCATGGCTCCTTCGTGCAAGAGCTCCTTCGGCTACAATGGAA
GGCAACGGTGCCCGTCCGACAGCTACGGCGCGGTGTTCCAGCACACCGGCAACCAGTATTGGCTCGACACTTTCACGTTG
GCCAACATTGTCGCCCGTGCGTACGACGTCGCAGTGTGGAGTCTTGCCC---CCTGCTCGAAGCTCAG---CCTGGAGAG
TGGGACTTGGGCGGATGTGTAGCACATTGGTCCGCCAGTGACAATTGGGTTGAGCCCGATCTA---GGATC----CTCAA
ATTGTTATCGATGAGTGAGAAAACATCCATAAGAGTGATGAGGTCACCATGGCGGCGTTTGCTCGGGCACATCCAGAGTA
TGTGCAAGCTGAGAGGGAAGTCTACTG---GAAGAAGAAGGC---CGAGAAGTGCAAGAATGACGATGAGGCAGGGCCTT
CCTTGTCACAAAGCAAGAAAAGGAAGAATGGAGGAGGTGGCAATGTGGTCAACAT------------CATCGAGTGACGA
GTCCGACGGCATTGACCGGGACAATGTGTAGTTTAAAGTTG----------GTAGTCTAAGTTTTATGTAGTATTTGAAC
TATGATTATAGTTGGTATTTGAACTATG------TTTTTGTCGATCA-TTATTTGAAATGTGAAATATGGCTGAAGTAGT
TCAAATGTTTAGTTCAGAAATAAAATGATTTGGTTGATCTGGGTGCCCTATTTTAGGGCTGTTGTTGGAGACGACGCTTC
CTCGTGCCCAAAGAAACCAGTTTTCATGCCCATTTTTTTCAAAAT--AACTAAATGTATGTCGCTTGAATATAGAATTTG
GGTCAGTCGATTTTCATGTGAAGGAAGGACCAGCCAGAGTGAAGGAAGAAGCTCATCGGAGGGAGGGAAGGAGCTCGCCG
GCGACCCCACTATCTATCTTACTGTGGCAGGGGCCC-CCCATTATCTATCTTAGGGGTGTGGGGGTGGTGCAATATCGGC
AG-AAAAAACTGGGAATCCCCGGGGCTAGAGGGATGACCGGGG---GCGGCAACACGACGGTGGGAGGAGGTTGAGGGGA
GGACGGGTGTTGACACCAGATTTTGGCATGATCAAAAACATAATTAAGAAGGCCTCAAATGGAAAAGTACTCAAAGCGAG
AAAGTTTTGTATCGTCAAAAGGAGAAACTTTGATATTTGGGCCATAGCCATCCGATCTCATCTCTAAGGATGAAAATGTG
TTTGAAGTACTAAGATTTAATATCCAAAACA
>chr5B_863
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--------------------------------------------------------------TCTAAGGAATCACGCCAC
CGCCGCTGTATTGCCGCCCAATTCCTCTGCCCACCCCAACGCTTTTTCGGAGCTGCCGCGTCCTCTCCGGCCCGTCACCG
TTGTTTTTTCTCGGGGCCGCTTCCTCTCCGGCCCGTCACCATGGCTCCTTCACGCAAGAGCTCCTCCGGCTACAACGGGG
GGTGACGGTGGCCGTCCGGCAGCTACAGCGTGGAGTTCCAGCATGCCGGCAGCTGGTATTGGCTCGGCAGCTTCATGTGG
ACCGACATCGCCGCGAGAGTGCATGACATCACAGTGTGGAGGCTTGGCCTGCCCCGCTGTAAGCTCAATTTCCTGGAGAT
TGAGACTTCGGCGAATGTGGAGCACGTCGGCCCGTGAGTGACAATTGGGTCGGGTCTGATCTA---GGCTC----CTCAC
ATTGTTATCGACGAGTGCAACAACATCCGTGAGAGCGATGAGGACACCTTGGCGGCGTTTGCTCGGGCACATCCAAAGTA
TGTGCAAGCCCAGAGGGAATTCTACTGGAAGA---AGGAGGC---CAAGAAGCGCAAGAATGATGACGAGGCAGGGTCTT
CGTCGTTATAAAGCAACAAGAAGAAGAATGGAGGAGGCGGAAATGTGGTCGACAT------------CAA-GAGTGATGA
GTCCTACGATATCAACTAGCACAATCTATAGTTTAAAGTTG----------GTAGTTTAAGTTTTATGTCGTATTTGAAC
TATGATTGTAGTTGATATTTGAACTATGATTAAATTTTGGTCGAACG-TTGTTCGAAATATGAAATATGGTTGAAGTAGT
TCAAAA-------------AGAAAATGGGCTGGTTGATCCGACTGCCCTATTTTAGGGCTGTTCTTGGAGACGACGCTTC
CTCGTGCCCAAAGAAACCAGTTTTCATGCCCAATTTTTTTTCACAACAGCTAAATGTAAGTCGCTTGAATATAGAATTTG
GGCCAGTCAATTTTCACGTGAAGAAAGGATAGGCTAGAGTGAAGGAAG--------------------------------
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>chr5D_888
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-------GTATTGCCGCCCAATTCCTCTGTCCACCCTGACGCTTTGTAGGAGCTACCGCGTCC-----GGCCCGCCACCG
CCATTTTTTCTAGGGGTCGCTTCCTCTCTGGCCTGCCGCCATGGCTCCTTCGCGCAAGAGCTCTTCCGACTACAACTGGG
GGCGACGGCGCCTGTCCGGCAGCTACGGCGTGGAGTTCCAGCACGCTAGCAGCTGGTATTGGCTCGACACCTTCATGTCG
ACCGACATGGCTGCCCGCGTGTATGACGTCGCAGTGTGGAGGCTTGGCCTTCCCTGCTCTAAGCTCAATTTCCTGGAGAT
TGAGACTTGGGCGGATGCGGAGCACGTCGGCCCGCGACTGACAATTGGGTCGAGCCCGATCTA---GGCTC----CTCGC
ATTGTTATTGACGGGCGCGACAATATCCGTGAGAGCGACGAGGACACCTTGGCGGCATTTGCTCGGGCACATCCAAAGTA
TGTGCAAGCCGAGAGGGAATTCTACTG---GACGAAGGAGGT---TGAGAAGCGCAAGAATGACGACGAGGCAGGGCCTT
TGTCGTCACAGAGCAAGAAGAAGAAGAATGGAGGAGGCGGCAATGTGGTCGACGT------------CGA-GAGTGATGA
CTTCGACGATATCGACTAGCACAATCTGTAGT-----------------------TTAAAGTTTTATGTCGCATTTGAAC
TATGTTT-------------------------AATTTTGGTCAAACG-CTGTTCGAAATATGAAATAGGGTCGAAGTAGT
TCAAATGTTTAGTTCAAAAAGAAAATGGGCTGGTTGATCCGAGTGCCCTATTTTAGGGCTATTGTTGGAGACGACGCTTC
CTCGTGCCCAAAGAAACCAGTTTTCATGCCTATTTTTTTTACAAT--AGCTAAATGTAAGTCACTTGAATATAGAATCTG
GGCCAGTCAATTTTCACGTGAAGGAAGGATTAGCCGGAGTGAAGGAAGAAGCTCGCCGGAGGGAAGGAAGGAGCTCGCCG
GCGACCCCACTATCTATCTTACTGTGGCAGGGGGACGCCCATTATCTATCTTAGGGTGT--GGGGTGGTGCAGTATCGCC
GAAAAAAAACTGGGCATCGCCGGGGCTAGAGAGATGGCTGGGGGTGGCGACAGCACAATGGTGGGAGGAGGTTGAGGGGA
GGGCGGG-------------------------------------------------------------------------
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>chr4D_999
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--------------------------------------CCATGACACCTAAGTGCAAGAGCTCCGTGGGATAGAACGGGG
TGCGTCGGCGGCCGTTCGGCAACTACGGCGTGGAGTTTCAACACGCCGGCCACCTGTATTGGTTCGGCATGTACACGACG
GCTGACCTTGCCGCCCGCGCGTACGACATCGCCGTGTGGAGGCTCGGCCTCACCCGCTCGAAGCTCAATTTGTCGGAGAT
CGATTCTAGGGAAGAT-----GCACGTAGGCCCACTAGTGACAATTGAGTTGAGCCCGATCCGAGGGGCAC----CTCGC
ATTATTATCGAGGAGCGGGGCAACATCTAAGAGAGCGAGGAGGAGGCCATGGCAGCGTTTGCTCGGACACATCCGGAGTA
TGTGCAAGCCGAGAGGGAGTTCTGCTG---GA---AGGAGGC---CGAGAAGCGCAAGGACGACGACGAGGCAGGGCCTT
CGTGGTAACAGGGCAAGAAGAAGAAGAATGCGTGAGGCTTCGGTGTGGTCGACGT------------CGA-GAGTGATGG
GTCCGATGATATCGTCTGGCACAATCTGTATTGTTCGTAGTAGTGCTTATCATAGTTCAAGTGACATGTAGTATTTGGAC
CATGTTTGTAGTTTGC---------TTGTTTAAACTTCGGTTGAACGTTTGTTTGAAATATGAAATATGGTCGAGGTAGT
TCAATTTTCTTCTT-------------ATTTGGTTGATCTGGGTGCCCTATTTTAGTGCTGCGGTTGGAGA---------
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>chrUn_1135
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--------------CCGCGTGTAAGACGTTGCTGTGTGGAGGCTCTGCCTTCCCCTCTCGAAGCTCAGTTTCCTGAGATT
TTGAGTCTCGATGGATGCGGAGCTTTTCGACTAGCCGGTGACGATTGAGTCGAGACCCTATTA---GGCCGACTTCTCTC
ATTGTTGTCAACGAGCAAGATAACATCCGATAGAGTGATGAGGTGGCCATGGTGGTGTTTGGTAGGGCACATCCGTAATA
TGTGCAAGCCGAGTTGGAGTTCTATTG---GA---AGAGGGACACTGAGAAGAGCAAGAATGACGACGAGGCAGTGCCTT
CATCGTCACAGAGAAAGAAGAAGAAGAATGATGGATCCTCCGGCGTGATCAACGTTGATTCCGGTAGCAA-GAGTGATGG
GTACAACGATATCGACTGGGACAATCTGTAGTGTTCGTAGTAGTGCTTATCGTAGTTTAAGTGGCATGTATTATTTAAAT
CATGTTTGTAGTTTGC---------ATGTTTATACTTTAGACGATTTAAAAA---AAATATGAAATATGGTCAAAGTAGT
TCAAAAGTT-AGTTAAAAAAGAT--TGATTTTGTTGATCTGGGTGCCCTATTTTAGGGCTGTTGTTGGAGACGACGCTTG
CTCGTGCCAAAAGAACAC-GTTTTCGTGCCCATTCTTTTT----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----
---SS-S-------S-------S--S-----S--------------S-S----S----------------------S---
---------S---S---------------S---------------------------------------------S--SS
---S--------------S-----------S--S----------S---------S---------------S-------S-
---S------S------S-----------------------S----S--------------------------------S
-------------------S-----S-S--S-------------------------------------S----------S
-----------S--------S---------S-------------------------------------------------
---------S---------S------------S-------------------S-------------S-------------
-S-S---------------S-S---------------S-------------------------------SS------S--
--------SS--S---S--------S------------------------------S-----------------------
-------S------------------------------S-------S------------S----------S---------
----------------S---S-----------------------------------------------------------
---------------------------------------S-S------S---------S---------------------
--S-----S-------S------------SS-----------------------SS--------S---------------
---------------------------------SS---------------------SSSSS-----------S-----S-
SS------------S---S------------S----S-S----------S--S---S-S---------------------
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_728
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--------------------------------------------------------------------GGCTGCCGCAAA
ACAAAAAC------------------------------------------------------------------------
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>reverse_1978
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---------------------------------------------------------TGTGGGGGTGGTGCAATATC---
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-------------------------------
