>input_sequence_86745
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------------------------ATGGCATCGTCGGTCCGGCGCCTTGCTCTCGCCGTGCTCGTGATCGTCGTCGTTCT
GATCAGCGGCACGAGCCTTGTCGGCGCGGCGCGGCCGGACCCGGCGGAGAGGAGCGGGGACGGTGGGGCTTACTTGGCGG
TGTACCCGGCGGC------------GGAGAGACGGGAGATGCTCATGGCGAGGCTGCTGGCCGGGCCCAGCCGAAGGGGC
GCCGGCCACTAG--------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G300600
CATATGTGCTCATTGACTTATGTATCTTTTTAATGCTCCATTTTAAGCCAATAAGAAACACCTTTTGTCAAAAAAGAAAA
CTAGCTACTGGCGTTGCAGCATTCCACGATGGGAACGTGTGAAAAGTAAAGGTGTTTCTCAACGAGACGAGACACCGAAG
GCACGCGGGCTCCCGGAACTTTCGTTGTCTGACTTGAGGTA-CCCCGGCTGCATGGTAGTAAGTGGTAACAAACGACCCA
GCCCGGTCGTGAGATTCGTACGTGCGGCCACT-TTACGG----------TCAGGACCGATGCCGTCTTCACGAAAAGAAT
CCCAAAATCGCAAAAGCCCAGGCCCTTTCCCCTTCTTCGCAAGCAACGGACCGAACATAAGTAGCGCGACGTCATGTTTG
CTCGCCCCCACCTGCGAGACTAGCTGACTTGATAAGAATCTCCTTACCACTTCCCTTTGAATTTTGACACATGAAATATA
GCGCCGTGTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACAC
ACACACACACACACACACACACACACACAAAAGAGCTGCGAGACTAGCCGGAAACAGCGTCTGCTAGGTAGGTC------
-------------------------TTGGGTCTTGATTTTGCCGGCTAACAAGGAAAAGACTCGGTTCGAGCAAGCAGCA
GCACGTTCGGTCAC------TACACATCTACACGTCTTTTTCCATGGG----------CTCTCCGCTCGGCTCTGCTGAC
GCGCCATTGGAACCTCCCTTTCCACCTTACACATC----CTCCGAGC----TCAGCAAACACGTCACCCTCTCACCGTCT
CACCGACCCGTCAAGCCATCACCGCACCACACCACATCACCTCTATAAATACTCACGCTCGCACTC---------CA---
--CTACCAACCAAACCACCGTCGCAAACTCAGGCGCGACCTAACACCCATCATAGTTGACT-------------------
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----------------------------------------TCTGCAGAGTTCAG----TCGCAAAACTACACCAACGCCA
CCTTCAGTTCTCCGGAGCTCTGTGATGGCATCGTCGGTCCGGCGCCTTGCTCTCGCCGTGCTCGTGATCGTCGTCGTTCT
GATCAGCGGCACGAGCCTTGTCGGCGCGGCGCGGCCGGACCCGGCGGAGAGGAGCGGGGACGGTGGGGCTTACTTGGCGG
TGTACCCGGCGGC------------GGAGAGACGGGAGATGCTCATGGCGAGGCTGCTGGCCGGGCCCAGCCGAAGGGGC
GCCGGCCACTAGGTA----CAACGTACACGCAGAAGGGCAGCTTGGATCGGTTGATCGGGTT-CAAGGTTTCGTAGACAT
GTGCATGAAGATGATTAGCGAATCCATTGGCCCTTCGCGTCATGCGAATTGCAGCTAGAG--TGATTCTTTGATATATTT
CTTTCTTCTATTCCCTTTTC------------------------------------------------------------
-----------------------------------------------------------------------TCGTTGGAA
GTTGTTACTAGTGAGTACGGGAGATTGTATAAACTAGATGTATCATACCCGTTGTCATGGGAACCGGCTGCAATATACTT
CAATGAGATTTAATTGTGTGAGATATAAATATTTAGGTTAATAACACGTAAATAAAAAATACATCTTACTATATTTGAGT
ATGTATAGTTGTAAAATATTTGTTCAATATGAGTAGAATAATATAATGAAAAATATTTCTAAATGAATGATTGCATGTTG
ACGTGTCTTATACAATACATAATGGATATACGATGATGTGGCATGTTTGCATTTTTGACCTACCGAAGCCAGCCAGAGCC
CTGCACCCGAACGTGGAGAGAGAACAAGGAGAAGACGGGGTAGATCACCTCCAGATGAAGCAAAGGGCGTGGCTAGAGGT
CAGGTGACTGACCTAAAATTTGTAAAAAAAAATCTGACCACCCAGCTCTCGCTCGCTGCTGGATGTATTCCGTTCCGCCG
ACGACATGAAAGAAGCTAGCTACCGATTGTATCCGCCGGAAGCATGAAACACACGAACGTCACGGTAACAGGTGTGTTAC
AAGCATATGTTAGTATGTTAGACGTATACTTATGCTAGTAGTCATTAGCTATACATGCGAACCAATTTGTGATTGGATGG
TTAGAGAGACTGTGCTATTCCTAGCCCACCAGGGTCTCAAATCCTAGTGCTTGCATTATTCCTGGATTTATTTCAGGATT
TCCGGCGATGCGCTTTCAGTGGGAGGAGACTTCCTGTCGACGATGAGGCGTCTATGGCGACTTCGTAAATCTCAAAATGA
TATGCCGGCTCAGTCTTTCAGAGGTGCTCA
>chr5D_3
--TATGTGTTCATCGTGTTATGTATCTTTTTGATGCTCCATTTTAAGTCGATAAATAACACCTTTTGTCGGAAAA-AAAG
CTAGCTACTCGCGTTGCAGCATTCGACGATGGGAACACGTGAAAAGTAAAGGTGTTTCTCAACGAGACACCGAAGGCAT-
GCATGCAGGCTCCCGGAACTTTCGTTGTCCTAGTTGAGCTACCCCCGGCTGCATGGTA---AGTGGTAACAAACGACCCA
GCCCGGTCGTGAGATTCGTACGTGCGGCCACTTTTACGG----------TCGGTACCGATGCCGTCTTTACGAAAAGAAT
CCCAAAATCGCAAAAGCCCAGGCCCTTTCCCCTTCTTCGCAAGCAACCGACCGAACATAACTAGTGCGATGTCATGCTTG
CTCGCCCCCAACTGCGAGACTAGCTGACTTGATAAGAATCTCCATACCACTTCCCTTTGAATTTTGACACATGAAATAAA
GCGCGGTGTTCTTCTC----------------------------------------------------------------
--------------------ACACATAAAGAAAAACTGCGGGACTAGCCGAAAACAGCGTTTGCTAGGTAGGTC------
-------------------------TTGGGTCTTGATTTTGCCGGCTAACAAGGAAAAGACTCGATTCGAGCGAGCAGCA
GCACGTTCGGTCCCTACACATACACATCTACACGTCTTTTTCCATGGG----------CTCTCAGCTCAGCTCAGCTGAC
GCGCCATTGGAATCTCCCTTTCCACCTTACACATT----CTCCGAAC----TCAGCAAGCACTTCACCCTCTCACCGTCT
CACCGACTCATCAAGCCAT----------CACCACACCACCTCTATAAATACTTACGCTCGCACACAATACCA-------
-----------AAACAGCCGTAGCAAACTCTGGCGCGACCTAACACCTATTGTAATCGACT-------------------
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----------------------------------------TCTGCAGAGTTCAG----TCGCAAAACTACACCAACACCA
CCTTCAGTTATGGGGAGCTCTATGATGGCATCGTCCGTCCGGCGCCTTGCTCTCGTCGTGCTCGTGGTCGTCGTCGTTCT
GATAAGTGGCATGAGCCTTGTCCGCGCAGCGCGGCCAGAGCCGGCGGAGAGGAGCGGGGACGGTGGGGCTTACTTGGCGG
TGTACCCGGAGGC------------GGAGAGACGGGAGATGCTCACGGCGAGGCTACTGGCCGGGCCCAGCCGAAGGGGC
GCCGGCCACTAGGTA----C-------ACACGGACGGACAGCTTGGATCGGTTGGTCGGGTT-CAA-----CGTAGACAT
GTGCATGGAGATGGTTAGTGAATCCA-AGGCCCTTCGCGTCATGCGAATCGCAGATAGAG--TGGTTCTTTGATATAG--
--TTCTTCTATTCCATTTTC------------------------------------------------------------
-----------------------------------------------------------------------TCGTTGGAA
GTTATTACTA----------------------------------------------------------------------
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>chr5B_223
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---------------------------------------------------------------TGGTAACAACGACCTGG
--CCGGTCGTCAGATTCGTATGTGCGGCCACTTTACTTACGGTCGGGACTCGGGACCGATGCCATCTTCACGAAAAGAAC
CCAAAA-TCGCAAAAGCCCAGGCCCTTTCCCCTTCTTCGCAAGCAACGGACAGAACATAATTAGTGCGATGTCATGTTTG
CTCGCCCCCG----------------------------------------------------------------------
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----------------------------------GCTGCGAGACTAGCCGGAAACACCGTCTGCTAGGTAGGTCTTGCGT
CTTGTGTCTCAAAAAAAGGTAGGTCTTGCGTCTTGATTTTGCCGGCCAACAAGGAAAATTCTCGATTCCAACGAGCAGCA
GCACGTTCGGTCAC------TACACATCTACACGTCTTTTTTCATGGG----------CTCTCAGCTCAGCTCAGCTGAC
GCGCCATTGGAACCTCCCTTTCCACCTTACACATC----CTACGAGCTCGATCAGCAAACACGTCACCCTCTCACCGTCT
CACCGACTCATCA-------------CCACACCACGCCACCTCTATAAATACTCAAGCTCGCACACATTCACGCGCA---
--CTACCGACCAAACCACCGTCGCAACCTCAGGCGCGACCTAACACCCATCATAGTTGACT-------------------
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----------------------------------------TCTGCAGAGTTCAGTCAATCGCAAAACTACACCAACGCCA
CCTTCACTTCTCCGG------GTGATGGCATCGTCGGTCCGGCGCCTGGCTCTCGCCGTGCTCGTGGTCGTCGTCGTTCT
GATAAGTGGCATGAGCCTCGTCGGCGCAGCGCGGCCCGAGCCGGCGGAGAGGAGCGGGGACGGTGGGGCTTACTTGGCGG
TGTACCCGGCGGC------------GGAGAGACGGGAGATGCTCACGGCGAGGCTGCTGGCCGGGCCCAGCCGAAGGGGC
GCCGGCCACTAGGTA----C-------ACGCGGAAGGGCAGCTTGGATCGGTTGGTCGGGTT-CAAGGTTTCGTAGACAT
GTGCATGAAGATGATTAATTAATCCATAGGTCCTTCGCGTCATGCGAATTGTAGATAGAGTGTGGTTCTTTGATATAG--
--TTCTTCTATTCCCTTTTC------------------------------------------------------------
-----------------------------------------------------------------------TCGTTGGAA
GTTATTACTA----------------------------------------------------------------------
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>chr5D_583
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----------------------------------GCTGCGAGACTAGCCGGAAACAGCGTCTGCTAGGTAGGTC------
-------------------------TTGGGTCTTGATTTTCT-GGCCAACAAGGAAAATTCTTGATTCCAGCGAGCAGCA
GCACGTTCGGTCAC------TACACATCTACACGTCTTTTTCCATGGG----------CTCTCAGCTCAGCTCAGCTGAC
GCCCCATTAGAATCCCCATTTCTACCTTACACATC----CTCCAAGCTCGATGAGCAAACACGTCACACCCTCACCGTCT
CACCGACCCATCA-------------CCACACCACACCACCTCTATAAACACTCGCGCTCGCACACAAC-----------
----ACCAACTAAACAACTGTCGCAAACTCTGGCGCGACTTAACACCCATCATAGTTTTTTTTCGAAACAGAGGCATAAG
ATTTGCCTCATTTATTAAATAAGGAGAGAATAGAATTTAGAGTTTTACAGGACACCCCATACAAGCGGCATGACAATTAC
TCACACAAAATGATATTCTCTAGTTTCTTTGCGCCGGCAGTAACCCATAACTTTGCCTCTTCAATGATGGTTTGGAGGAG
AATAGGCGGTGGCGCAATTTTTTGCCGAAATACCCTAGCATCTGCAGAGTTCAG----TTGCAAAACTAGACCAACACCA
CCTTTAGTTGTGAGGAGCTCTGTGATGGCATCGTCAGTCCGGCCCCTAGCTCTCGTCGTGCTTGTGGTCCTCATCGTTCT
GATCAGTGGCAGAAGCCTTGTCGGCGCAGCGAGGCCGGAGCCGGTGGAGAGGAGCGGGGACGATGGGGCTTACTTGGCGG
TGTACCCGGCGGC------------GGAGAGACTGGAGATGCTCACGGCGAGGCTGCTGGCCAGGCCCAGCCGAAGGGGC
GCCGGCCACTAGCTAGGTAC-------ACGCAGAAGGGCAGCTTGGATCAGTTGATCAGATTCCAAGGTTTTGTAGACAT
GTGCATGAAGATGATTAGTGAATCCATAGACCCTTCGCGTCATGCTAATTGCACATAGAG--TGACTATTTGATCCCCGC
AAAAATAATTCGATAAGGGGCTATCGAAACTCCAAAACCATGTAGGCGATAAGAACAGACGAATCAAGAAGGATCCATCG
GAAACCTAAACCGATAAAATCTCGAAAGTCCCGTTGGAGACACACCTCTACACGTTCCTCCGTCGACAAAATCCTTGTAC
GTTGCATGATATAGTATGAAAATAGGCTTGTGGTTGTAGCAATGAAACAAAATGAAGATGACCAGGCACTGTCCGTGAAC
GCGCCAGGGGGCCTTTGCGAACATATGAGGGGTCACTTTTGAGGAGCTCGGCTTTGGATGCTCTTACAACAAACCTACAG
CCGAACAGTTGGAATGACCAAAGCCCAAACAATGCAAAACATACACATGGCCCACATAGAAACCAGCCA-----------
-----------------------------------------------------------------AAGCCACCGCGAGCC
CTGCACCCGAACGTGGAGAGAGAGCAGGGAGAAGACAAGGTAGGCCACCTCCAGAGGAAGCAAA----------------
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>chr5A_648
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--------------------------------------------------AAGGAAAGGACTGGATTCGAGCGAGCAACA
GCATGCTCCATCGGTCA----GCACATCTACACGTCTTTTTCCATGGG----------CTC-----------------AC
GCGCCATTGGAGTCCCTCTTTCCACTTTACACATCAACTCTGCGAGT----TCAGCAAACGCGTCG--TGCTCACCGTCT
CACCGACCCCAA---CCCCGGCAC----------CACCGCCTCTATAAATACACGCTCGCACACACTCGGCGCGAACTGA
ACCAACCAACAAAGCCAAAATCACAACCAGCGCTGCAAAGTCGCAGGCCTCGCCTCTCTCCCCGCGTACGTTCTCATCTG
AG------------------------------------------------------------------------------
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------------------------------------------------GTTCAG----CGGCAAAGCTACACCAACACCA
GCTTCAGTTCTCCGGAGCTCTGTGATGGCATCGTCGGTCCGGCGCCTGGCTCTCCCCGTGCTCGTGGTCGTCGTCGTTCT
GATCGCCGGCACCAGCCTTGTCGGCGCGGCGCGGCCGGCACCGGCGGAGAGGAGCGGAGACGGCGCGGTGCACTTGATGG
TCTACCCGGCGGCGGTGGTGTCGG---------TGGAGATGCTCATGGCGAGGCTGCCGGCCGGGCCCAGCCGCAGGGGC
GCGGGGCACTAGCTA----CT-----CTCACGGACAGACATCTTGGATCAGTTGATGGGCTTGCAAGGTTTTGTAGACAC
ACCAAGATGAT---TTAGTGAATCCACAGGCCATTCGCGTCATACTAATTG-----------------------------
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>chr5B_648
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--------------------------------------------------AAGGAAAGGACTGGATTCGAGCGAGCAGCA
GCATGCTCCATCGGTCA----ACACATCTACACGTCTTTTTCCATGGGCTCAGCTCACCTC-----------------AC
GCGCCATTGGAGTCCCTCTTTCCACTTTACACCTTAGTTCTGCGAGC----TCAGCAAACGCGTTG--CCCTCACCGTCT
CACCGACCCATCCCTCCCCGGCAC----------CACCGCCTCTATAAATACACGCTCGCACACACTCGGCGCAAGCTGA
ACCAACCAACAAAACCAAAATCACAACCAGCGCTGCAAACTCGCAGGCCTCTTTCCT-----CGCGTACGTTCTCATCTG
AG------------------------------------------------------------------------------
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------------------------------------------------GTTCAG----CGGCAAAGCTACACCAACACCA
GCTTCAGTTCTCGGGAATTCTGTGATGGCATCGTCGATCCGGCGCCTGGCTCTCCCCGTGCTCGTGGTCAC---CGTTCT
GATAGCCGGCACCAGCCTTGTCGGTGCCGCGCGGCCAGCACCGGCGGAGAGGAGCGGAGACGGCGCGGTGCACTTGACGG
TGTACCCGGCGGCAGTGGTGTCGGCGGAGACGGTGGAGATGCTCACGGCGAGGCTGCCGGCTGGTCCCAGCCGCAGGGGC
GCGGGCCACTAGCTA----CT-----CTCACAGACAGACATCTTGGATCAGTTGATGGGCTTGCAAGGTTTTGTAGACAC
AC-----AAGATGATTACTGAATCCATAGGCCATTCGCGTCATACTAATTGCAGATATAA--CGATTCTTTCATATCTTC
T----TTCTATTCCCTTTTC------------------------------------------------------------
-----------------------------------------------------------------------TCGTTGTAA
GTTGTTAC------------------------------------------------------------------------
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>SNPs
SS------S----S-SS--------------S---------------S-S----SS-------------SS----S---S
---------S--------------S-----------SS------------------------------SSSSS-SSS-SS
---S--S----------------------SS-S-----S-------------------SSS-------------------
---------------------------------------------------S----------------------------
------------------------------------------------------------S---S----S----------
----------S--------------------------------S----------------------------------S-
----S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----S-S-S--S-----------------------------------------------
----------------------------------------------------------------S-------S-------
---------------------------------------------------------------S----S----S------
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---------S---------SS-SSSS----------S---------------------------S---------------
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------------------------------------------------------------------S-------------
---------------------------------------S----------------------------------------
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--------------------SSSSSS------------------------------------------------------
------------------S--------S--------------------------S------------------------S
SS------------------------------------------------------------------------------
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----------S-SSSSSSSSS-S-SSS-SSSSSS-SS-SSS--S-S--SSSS--SSSSS-SSSSS-SSSSSSSSS-SSSS
SSSSS--SSSSSS--SSSSS-S----S-SSSS-S-SS--SSSSSSS-SSSSS-SSSS-SSSSS-SSS-SS-S-SS-SSSS
SS-S-S-----S--SSSSSSSSSS-S-S-SS-SSSS--SS---S-SSSSSSSSSSS-SSS--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-SS-----
-----------------------S--S---------SS-----SS----------S--------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_159
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-----------------------------------------------------------CAACGAGACGAGACACCGAA-
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>reverse_2608
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-----------------------------------------------GCGTCTATGGCGACTTCGTA-------------
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