>input_sequence_86740
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATGAT
CCTCGTGGCGGTCATGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGG
CGCCGCTGCGCATCCTGCCGCGCCGCGTGCGGTTCGTCGTCCTCCGCACCCTCCCCTTCGCCTCCCCCTCGCCGCCCGTG
CCGCCGCCGCCGCCGCCCGCGCACGCCGTCCCCGTTCTGCTCGCGCGCTGA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3D_1_TraesCS3D01G444100
CCCGCCGCAGTCGGTCTCGTTCGTTAAATTTATGGTCAAAGTTCGACCTCGAGAAGCGCGGGCGCACTATATTTTGGAAT
GGAGGGTGTAGTATTCTATTAGTAAGCTCTTACACAGTTGAGTTAAACATAGATATTTTTCTTTTAATAAACTCCGTCAC
ACTTAAAAATTATTCCTACCTCCGCCACTGTTCGCGTGCCATCTTAGAGTAGAAGATACAGATCACTAAGAGGGTGCTTG
GATCCAAGGGACTTATTTTAGTCTGACTAAAAATAGTCTCTTTAAGAGGCTAAAGTTCCAAGCGCCCCTGACTAAAGAGG
GGCTAAAACTAGTCTTGAGACTAAATTTTTTTAGTCAGGGGTACCCCTACTAAAATGTGGATTAGTCCTCTCTCCTCATT
TAACTTCTCTCCTTTAACACAGGCGAGTTCTGAATTGGAGGGTTTAGAGGATAATAAATGCTCATTAACTTGATTTTAGT
CTCTTTAGTATTTGGATCCAAGCATGGGTGAGGCTAGAAAGTTTTAGTCCCACTACTTTCAGTCATGAGACTAAAACGTA
TCAAACACCCTCTAACTACCATGCCTACAATTAAATTAGGAGAGAGAAAGTGGTTCTCAAGATTAATTACCATGTCTCAC
AACTAAACCAGGGGAGAGACATCAATTATCAGACCGGACAGTTAAAATCAAGGGATTAAATTTTGGTGCGTACCGAGCGC
GCTGGCCAAAAGAGTCCTTTGGC-----------CTCGGCGCCCCAGCA-------------GCCAAAAGATCAGCCCCA
CAGCGGTTGCAATGGATAAGACCGACACTAAACCTCTATCCGAAACGAAAAGGTCGAGCAAAACTATCCGCGGCGAAGCC
ACCCGCTTCCGGAAACTCCGACCCAACAACCAGCCTCTCCCTTC---CTCCAAGCAGCCGCAACGCTCAGCAGAACCCAA
ACAAACCATCACCGCTGTCACACCAAACAAAGCA-----GAGCAGAGGGCGAAG---GGTCGACATCGGATCGGCATGAT
CCTCGTGGCGGTCATGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGG
CGCCGCTGCGCATCCTGCCGCGCCGCGTGCGGTTCGTCGTCCTCCGCACCCTCCCCTTCGCCTCCCCCTCGCCGCCCGTG
CCGCCGCCGCCGCCGCCCGCGCACGCCGTCCCCGTTCTGCTCGCGCGCTGATCATGGGCGGATCGAGCTTAGCTCATGCT
TTGAGCTCTGAACTC-----AAGTGAGGCTGCTTCTTGTACATACTCCGGTCCGGTTACTGGCCCAATAACTTGGTTAGC
TAAAAGCAAGTACTCTGCTTCTGATGTTTGGCTGTCCTAGAGATGTTGGTGTACCTTGTAATTTCTTGCCTGTTCTTTGA
CCTTGCGGAGTAGTAGTCGGTCATGGCTCAACTGGTGATGAGATATGTAAATTTCTGTATATATATGCCAGCATGTCGCT
TTCGGATGC---ATTTCGATCCGCAGATTGTTGATTTGGAACAAAAATTCCGAAAGAGTCGATCAACTGCTAGTCTGCGT
ACA-----------GGCAACCCGCAAACCCGGTTGGTAAAAACCGTATTATGCCTTTGTACGATTGCATTGGGTTTGAGG
GGGATTAAAGGGGATTGTGAGGATTAAATCCCCTGC--------AAGTTAAATTCCTTCCCAATTCTTTTCAAGCCTCTC
CAATCCTCTTGGGAAGAGATTAAATTAGGGCAAGCGTTTGGGAAAAATAAAGGACGATGATAACTGCCACACGTGTGGGC
GTTAAGGGGTCTGCCCACACGTTTTGTGTGGTGCTTAACAGTATCAGTCCACACGCCTACGTGTGGGCAAAACAAGTAAT
GCACACACGTCTTTTTTTCTCGCGGTCCCTCTCATGCCTACGTGTGGGCGAAATAGATAATGCCCACACGCTCGTACGTC
AGGCCTCCTACCTCATGGTCCCGCACGCCTCGCGTGACAGTCACCACGTGCCCCGCAGTTGCCATGGTCCGGACCCTCTT
CCATGTTCGTTTAACTGTAGTTGCCATGTCGCTGAACCATAGTTGCCATGTCGGACAACTACAGTTGCCATGGTTGCTCA
ACTACAGTTGCCATCTCAGGTCAAGTGCCAGATGCCATTTTTGGACAGCTGCAGCTATTGCCATGTATGGTTTGATTTAC
TATAGTTGCCATGATTTGAAAACTTTAGGGGTTGCCAT
>chr3B_700
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATTTTGGTGCGTACCGAGCGC
GCTGGCCAAAAGAGTCTTTTGGCATTGCTAGTGACTCGGCGCCCCAGCTGCAGTGTAGGCTCGCCAAAAGATCAGCCCCA
CAGCGGTTGCACTGGATAAGATCGACACTAATCT--TATCGAAAACGAAAAGGCCGAACAAAACTATCCGCC--------
-CCCGCTTCTGGAAACTGCGACCCAAGAACCAACC---CCCTCC---CTCCAAGCAGCCGCAACGCTCAGCAGAACGCAA
ACACGCCATCACCGCCGTCACACCAAACGCAACAAAGCAGAGCAGACAGCAGAGGGTGGTCGACATCGGATCGGCATGAT
CCTCGTGGCGGTCATGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGG
CGCCGCTGCGCATCCTGCCGCGCCGCGTGCGGTTCGTCGTCCTCCGCACCCTCCCCTTCGCCTCCCCCTCGCCGCCCGTG
CCGCCGCCGCCCC------CGCACGCCGTCCCCGTTCTGCTCGCGCGCTGATCATGGGCGGATCGAGCTCAGCTCATGCT
CTGG-------ACTC-----AAGTGAGGCTGCTTCTTGTACATACTCCGGTCCGGTTACCGGCCCAATAACTCGGTC---
----AGCATGTACTCTGCTTGAGATGTTG-----------------------------------CTTGCCTGTTGTTTGA
CCTTGCGGACTAGTCA---GTCATGGCTCAACTGGTGATGAGATATGTAAATTTCTGTATATATATGCCAGCTTGTCACT
TTCAGATGTAGTATTTCGATTCGCAAATTGTTGACTTGGAACAAAAATTCTCAAAGAGTCGATCAACTGCTAGTCTGCGT
ACAAACACTGTACAGGCAACCCGCAAAACCGTCGGGTAAAAACCGTATTACGCC--------------------------
--GATTAAAGGGGATTGTGAGGATTAAATCCCCTGC--------AAGTTAAATTCCTCCCCAATCCTTTTCAAGC---TC
CAATCCCCTTGGGAAAAGATTGAATTAAGGCAAGTGTTTGGAAATAAATAAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>chr3A_867
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GGAAACTGCGACCCAACAACCAACC---TCCCTCCCTCTCCAAGCAGCCGCAACGCTCACCAGAACCCAA
ACACGCCATCACCGCCGTCACACCAAACGCAGCAAAGCAGAGCAGAGGGCGAAG---GGTCGACATCGGATCGGCATGAT
CCTGGTGGCGGTCATGGCGGAGCTGCTGGAGGAGTACACGGCGGCGGTGGCGCGCGCCCTGGAGCGGCTGCTGTCCGCGG
CGCCGCTGCGCATCCTGCCGCGCCGCGTGCGGTTCGTCGTCCTCCGCCCCCTCCCCTTCGCCTCCCCCTCGGCGCCCGTG
CCGCCGCCGCCCC------CGCACGCCGTCCCCGTTCTGCTCGCGCGCTGATCATGGGCGGATCCAGCTCAGCTCATGCT
CTGAGCTCTGAACTCAAGTGAAGTGAGGCTGCTTCTTGTACATACTCCGGTCCGGTTACTGGCCCAATAACATGGTTAGC
TAAAAGAAAGTACTCTGCTTCTGATGTTTGGCTGTCCTAGAGATGTTGGGGTACCTTGTAATTTCTTGCCTGTTCTTTGA
CCTTGCGGAGTAGTCA---GTCATGGCTCAACTGGTGATGAGATATGTAAATTTCTGTATATT----CCAGCTTGTCGCT
TTCAGATGTA---TTTCGATCTGTAGACTGTTGATTTGGAACAAAAATTCCGAAAGAGTCGATCAACTGCTAGTCTGCGT
ACAAACACTGTACATGCAACCCGCAAACCCGGGGGGTAAAAACCATATTATGCCTCGTTA-GATTGCAGTGGGTTTGAGG
GGTATTAAAGGGGATTGTGAGGATTATATCCCCTATTCCCCTGTAAGTTAAATTCCTCCCCAATCCTTTTCAAGCCTCTC
CAATCCCCTTGGGAAGAGATTAAATTAGGGCAAGTGTTTGGAAAAAAATAAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
----------------S-------------------------------S-------------------------------
-----------S---------S---------S-SSS----SS-----------S---S-------------SSSSSSSSS
S--------S-------S--------------S--SSS------------------------------------------
---SS----------S------------SS--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-SSSSSS--------------------------------------------------S----------
S-------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------SSSSS-----------------------------------------------------S-------
---S----S-----------------------------------------------------------------------
--------------------------------SS---------------------SSS--S-------S-----------
---------------------------------------------------------S------S---------------
------S---------------------------S------S-----SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_878
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CAAAACTATCCGCGGCGAAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>reverse_2193
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGCCATTTTTGGACAGCTGC----------------------------
--------------------------------------
