>input_sequence_86701
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-----------------------------------------ATGGGCGGAGTCAGAGCAGAGAGTTGGGGTGTAGG-AGA
TGAGGAGAATGGGGTAGGCTTCATGATGGAAGGAGATACGACGGCAAAGAATGTGGAGGTCGGGTGTTACATGGAGGCGC
AT-----------------------------------G---------------GTGAGCACCACACGCAGATGTTCCTCT
TAGCTTCCTACCTCTTCCCTGCTGCCCTAATTTCCCCCTACGACTCAATCATGCCTCAAGCTACTCTCTAA---------
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-------------------------------------------------------------------------
>chr7A_1_TraesCS7A01G236000
TAAATTTTGGACACGATCTCTATCCGGATATTAGATTTCTTGCGGAGAAAGAAGGGCACCGACCGCCTTACGGGGTGGCC
ATGAGGGCCCAGGGCGCTCCTGACCCCCTGGGGCGCGCCTCCCTGCCTCGTGGCCCCCTCGGGCATCATCTCATGTTGAT
TCTTCTTCCCAAAAATCACATATATTTCAAAAAAATCTCTGTCAGTTTTTATCCCGTTTGGACTACGTTTGATATGGATT
TTCTGCGAAACAAAAAACATGCAACAAACAGGAACTGACACTAGGCACTGGATCAATATGTTAGTCTTAAAAATAGTATA
AAAAGTTGCCAAAAGTATATGAAAGTTGTATAATATTGGCATGGAACAATAAAAAATTATAGATACGATGAAGACGTATT
AGCTACAAACGATCCCCTATCTCTACTCTTAAGGGACGACTTGATAGTCTCCGTTCCACAGTTTATTTTCGTCCCACCTT
TTTCTAGTTTATTTTCGTCCCTGCTCCCACCTCCCAGGTAGTCCCCTCCATGCCAAAAAAAAAATCAAACCAACCCACGT
TACTAGGGAGCGATGCCTCCAGGTACTCCCCTCCACGCCAAAAAAATGGACGAAAATAAACCGACGAAAGAAAACCAGCG
AAAAAATCATCTTGGTCTGGCAACATGTGAATGAGAAAGCGAAGCCTCCAGGTGCCCCCGAGCGACGCCACACCAGATAC
CTTCACTGTCGCCCTCGCACATCAAGCCCGCACCCTCGCCGTCTCAGTCACCGCCGCCCTCACCCTCGCAGTCGCTGCCG
ATCCCCTTCCCTCATCATCCTCCCTCAAGCGCTCGCCGCAACGACCGTGAGTGTGGCTGCTCCTCGCCCATTCTCTGGCA
ACCGTCCCCTCCCCGCTG-CCTCCGCCGACGCTGGATAGAACGAGGTGGGTTCAACCAGTAGAGCCCTGGGCGAGATCGC
GTGCGAGTGGACGGAGTAGGCGCTGGTGGTCCTGGTGAACCATGGGCGGAGTCAGAGCAGAGAGTTGGGGTGTAGG-AGA
TGAGGAGAATGGGGTAGGCTTCATGATGGAAGGAGATACGACGGCAAAGAATGTGGAGGTCGGGTGTTACATGGAGGCGC
AT-----------------------------------G---------------GTGAGCACCACACGCAGATGTTCCTCT
TAGCTTCCTACCTCTTCCCTGCTGCCCTAATTTCCCCCTACGACTCAATCATGCCTCAAGCTACTCTCTAATTTTTGGAA
TTTGCATTGTGGTATATTCTGAATTCTTGTTTGATTACAATGAAAGAAGTGGAAGAGGATCTGCAGTTGTGTCGGGGTAA
ACTTTAGTGATGTTGTTGTTTCTTTTAAAGATCTTCTTTCTTTCAGCACTACAAACTTCTCAAGCAAATTCGTGTGATTT
ATTTATTTGATTCATAGGTTGTA---ATCTATTTGAGGTCTGATTGTGCTTTCCTGATCTAACTTACAGTGCAAGTAGTC
CATTTAACACCAGTTTAGAAGAAA---AAACTATATTCATCCAGGTGATGCCATTCATTTGCTAAGTGCTTCTGA--ATT
TTTGTTGTTCTAATGCATTTGCTTCTGAATTATGACATG--------------TGGA---TTTGTTTTTTAATCTGTTTA
TGTGCAAGGTCATGTAAGGAGAGCAAGGATCCTTGGGAGATGCTACTCTAATTTTTTGCCATTCAGATGACACTATT-AT
CACAATCTTGTTATGGCTGAAACAATTGCCTT-----GCATCATAATTTTTTTGA-GTTAATTAACAGGGATATAATGCC
GAATACTTGGAGCACACTTTGTTATTAGTACAATGCAGATTGATTGTGCAATTTGTGA-GTAAGAGCACATTTAGATGGA
AGTGGTGGTAACAGAATAGGAGTACTAAATATGTTATGTGTGTTTTGTACAAAACTATTTCCCTTCTGTTCCATGTTTTG
GTCATATGCAATCATCCACCACATCAGTATCGCTAG-CTGCACGATTTGATCTATTTTCATGATGCTCAATTGGAATCTC
TCTGCATTTTGTAGAAAAATGGCTGTGTAAGCTTTTGATTAACCTGTAATAGTTAGCTTGTCTTGTATCTATTTGATCAG
TTTTTCCAAAAAGTACGAACACA--------CACATTGTATAAATTTTACATGGATTTACATGATGGGCAAGTAGCCTTG
GTCTCCTGCCTCTTCCATTTTCATATGGTATATATAGTTCTAAATTCAGTTTAACATGAATCTTGATAATACT
>chrUn_802
TCCCC---------------------------------------------------------------------------
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-------TCCCCCATCTTCCTCCTTCAAATTTTGGCAGCAACGACCGTGAGTGTGGCTGCTCCTCGTCTGAGCTCCGGCA
GACGTCCCCTACCCACCCCCCTCCGCTGACAGTGGCCAGAACGAGGTGGGTTCAACCGGCAGAGCCCCGGGCGAGATCGC
GTGCGAGTGGACGGAGCAGGCGCTCGTGGTCATGGTGAACCATGGGCGCAGTCGGAGCAGAGAGTCGGGGCATAGG-AGA
TGAGGAGAACGGCGTAGGCTTCATGATGGAAGGAGATACGGCGGCGGACAAGGAGGAGGTCGGGGGTTACA----GGTAC
AGGTGGATGTGAGCAACCTGCCCCCTACGACGTCGATGGTGAGCACCCAATATGTGAGCACCACGCGCAGATGTTCCTCT
TAGCTTGCTACCT-TTCCCTGCTGCCCTAATTTCCCCCTACAACTCAGTCAGGCCTCAAGCTACTCCCTAATTTTTGTAA
TTTGCATTATGGTATATTCTGAATTCTTGTTTGATTATAATGAAAGAAGTGGCATAGGATCTGCAATTGTGTTGGGGTAA
AGTTTAGTGATATTTGTGTTTCTTTTCAAGATTTTCTTTTTTTTGGCAGTACAAACTTCTCAAGCAAAGACGTGTGATCC
ATTTATTTGAGTTGTAGGTTGTA---ATCTAT------------------------------------------------
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-------------------------------------------------------------------------
>chr1D_802
TCCCC---------------------------------------------------------------------------
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-------TCCCCCATCTTCCTCCATCAAATGCTGGCAGCAACGACCGTGAGTGTGGCTGCTCCTCGTCCGTGCTCCGGCA
AACGTCCCCTACCCACCCCC-TCCGCTGACGGCGGACAGAACAAGGTGGGTTCAACCGACAGAGCCCCGGGCGAGATCGC
GTGCGAGTGGACGGAGCAGGCGCTCGTTGTCGTGGTGAACCATGGGCGTAGTCAGAGCAGAGAGTCGGGGCGTAGAAAGA
TGAGGAGAACGGGGTAGGCTTCATGATGGAAGGAGATACGGCGGCGGACAAGGAGGAGGTCGGGAATTACACGGAGGTAC
AGGTGGATGTCAACAACCTGCCCCCTACGGCGTCGACG---------------GTGAGCACCACGGGCAGATGTTCCTCT
TAGCTTGCTACCTCTTCCCTGCTGCTCTAATCTCCCCCTACGACTCAATCAGGCCTCAAGCTACTCCCTAATTTTTGTAA
TTTGCATTATGGTATATTCTGAATTCTTGTTTGATTATAATGAAAGAAGTGGCAAAGGATCTGCAATTGTGTTGGGGTAA
AGTTTAGTGATATTGGTGTTTCTTTTCAAGATTTTCTTTCTTTTGGCGGTACAAACTTCTCAAGCAAATTCGTGTGATCT
ATTTGTTTGAGTTGTAGGTTGTA---ATCTAT------------------------------------------------
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-------------------------------------------------------------------------
>chr3B_802
TCCCC---------------------------------------------------------------------------
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-------TCCCCCATCTTCCTCCTTCAAATTTTGGCAGCAACGAAAGTGAGTGTGGCTGCTCCTCGTCCGTGCTCCGGCA
GACGTC-CCTACCCACCG-CCTCCGCTGACGGTGGCCAGAACAAGGTGGGTTCAACCGGCAGAGCCCCGGGCGAGATCGC
GTGCGAGTGGACGGAGCAGGCGCTCGTGGTCGTGGTGAACCATGGGCGCAGTCGGAGCAGAGAGTCGGGGTGTAGG-AGG
TGAGGAGAACGGCGTAGGCTTCATGATGGAAGGAGATACGGCGGCGGACAAGGAGGAGGTCGGGGGTTACACGGAGGTAC
AGGTGGATGCCAGCAACCTGCCCCCTACGACGTCGATGGTGAGCACCCAATATGTGATCACCACGCGCAGATGTTCCTCT
TAGCTTGCTACCT-TTCCCAGCTGCCCTAATTTCCCCCTACAACTCAGTCAGGCCTCAAGCTACTCCCTAATTTTTGTAA
TTTGCATTATGGTATATTCTGAATTCTTGTTTGATTATAATGAAAGAAGTGGCATAGGATCTGCAATTGTGTTGGGGTAA
AGTTTAGTGATATTGGTGTTTCTTTTCAAGATTTCC--TTTTTTGGCAGTACAATCTTCTCAAGCAAAGACGTGTGATCC
ATTTATTTGAGTTGTAGGTTGTA---ATCTAT------------------------------------------------
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>chr6A_804
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---CCCATCCCCCACCTTCCTCCTTCAAATTTTGGCAGCAACGACCGTGAGTGTGGCTGCTCCTCGTTCGTGCTCCAGCA
GACGTCCCCTACCCACCCCCCTCCGCTGACGGTGGCCAGAACGAGGTGGGTTCAACCAGCAGAGCCCCGGGTGAGATCGC
GTGTGAGTGGACGGAGCAGGCGCTCGTGGTCGTGGTGAACCATGGGCGCAGTCGGAGCAGAGAGTCGGGGCGTAGG-AGA
TGAGGAGAACGACGTAGGCTTCATGATGGAAGGAGATACGGCAGCGGACAAGGAGGAGGTCGGGGGTTACACGAAGGTAC
AGGTGGATGTCAGCAACCTGCCCCCTACGACGTCGATGGTGAGCACCCAATATGTGAGCACCACGCGCAGATGTTCCTCT
TAACTTGCGACCT-TTCCCTGCTGCCTTAATTTCTCCCTACAACTCAGTCAGGCCTCAAGCTACTCCCTAATTTTTGTAA
TTTGCATTATGGTATATTCTGAATTCTTGTTTGATTATAATGAAAGAAGTGGCATAGGATCTGCAATTGTGTTGGGGTAA
AGTTTAGTGATATTGGTGTTTCTTTTCAAGATTCTCTTTTTTTTGGCAGTACAAACTTCTCAAGCAAAGACGTGTGATCC
ATTTATTTGAGTTGTAGGTTGTA---ATCTAT------------------------------------------------
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>chr7A_1119
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AT-----------------------------------G---------------GTGAGCACCACGCGCAGATGTTCCTCT
TAGCTTGCTACCTCTTCCCTGCTAACCTAATTTCCCCCTACCACTCAATCAGGCCTCAAGCTACTCCCTAATTTTTGTAT
TTTGCATTATCGTATATTCTAAATTCTTGTTTGATTACAATGAAAGAAGTGGCAGAGGATCTACAATTCTGTCGGGGTAA
AGTTCAGTGATGTTGGTGTTTCTTTTCAAGATTTCCTTTCTTTTGGCACTACAAACTTCTCAAGCAAATTCATGTGATCT
ACTTATTTTAGTTGTAGGTGTAATCGATCTATTTGAGGTCTGATTATGCTTTCCTGGTCAAACTTACAGTGCAAGTAGTC
CATTTAACACCAAGTCAGA--AAA---AAACTATATTCATCCAGATGATGCCATTCATTTGCTAAGTGCTTCTGAGCATT
TTTTTTATTCTGATGCATTTGCTTCTGAATCATGACATG--------------TGGTTTTGTTTTTTA----TCTGGTTA
TGTGCAAGTTCATGTAAGGAGAGCAAGGATCCCTGTGAGATGCTACTCTAATTTTTTGCCATTAAGATGACACTATTGAT
CACAATCTTGTTATGGCCGAAACAATTGCCTT-----G------------------------------------------
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>chr5D_1417
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-------------------------------TTTGCGATCAGATCGTGCTCTCTAGATCTAACTTACAGTGCAAGTAGTC
CATTTAACACCAAGTCAGA--AGAAATAAACTATATTCATCCAGGTGATGCCACTCATTTGCTAAGTGCTTCTAA--ACA
TTTTTTGGTCTGATGCATTTGCCTCTGAATCATGACATG--------------TGGT---GTTGTTTA----CCTGGTTA
TGTGCATGTTCATGTAAGGAGAGCAAGGATCCCTGTGAGATGCTACTCTATTTTT--GCCATTAA-ATGACACTATTGAT
CACAATCTTGCTACGACTGAAACGATTGCCTT-----GCGTCATAATTTTTTATGGGTTAATTAATAGGGATATAATGCC
GAACAATTGAAGCACATTTTACTATTAGTGCAATGCAAATTGATTGTGCAATTTGGGATGTAAGAGCACATTTAGATGGA
AGTCGTGGTAATAGAATAGAAGTACTAAATATGTTATGTGTGTTCTGTAGAAAACGCTTTCCCTTCTATTA-ATGTCTTG
GCCATATGCAATCATCCACCACATCAGTATCACTAAACTGCATGCTTTCATCTGTTTTCATGCTGCCCAATTGGAATTTC
TCTTCATTTTGTCGAAACATGGTTGTGTAAGCTTTTGATTAACCTGTAAGAGTTAGCTTGTGTTGTATCTATTTGATTGG
TTTTGCCAAATAATATGAACACACACACTC--------TATAAATTTTACATGGATTTACATGATGGGCAATTAACCTTA
GTCTCCTGCCTCTTCCACTTTTCATATGG---TATAGTTCTAAATTAAGTTTAACATGAATCTTGATAATA--
>chr7A_1424
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--------------------------------------TCAGATGGTGCTCTCTAGATCTAACTTACAGTGCAAGTAGTC
CATTTAACACCAAGTCAGA--AGAAATAAACTATATTCATCCAGGTGATGCCATTCATTTGCTAAGTGGTTATAA--ACA
TTTTTTGGTCTGATGCATTTGCTTCTGAATCATGACATG--------------TGTT---GTAGTTTA----CCTGGTTA
TGTGCATGTTCATGTAAGGAGAGCAAGGATCCCTATGAGATGCTACTCTATTTTT--GCCATTAA-ATGACACTATTGAT
CACAATCTTGCTACGGCAGAAACACTATTGATCCGTAGCGTCATAATTTTTTATGGGTTAAATAATAGGGATATTATGTC
AAACAATTGAAGCACATTTTATTATTAGTGCAATGCAAATTGATTGTGCAATTTGGGATGTAAGAGCACATTTAGATGGA
AGTCATGGTAATAGAATAGGAGTACTAAAAATGTTATGTGTGTTCTATACAGAACACGTCCCCTTCTATTGCATGTCTTG
GTCATATGCAATCATCCACCACATCGGTAT--------------------------------------------------
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-------------------------------------------------------------------------
>chr1A_1424
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--------------------------------------TCAGATGGTGCTCTCTAGATCTAACTTACAGTGCAAGTAGTC
CATTTAACACCAAGTCAGA--AGAAATAAACTATATTCATCCAGGTGATGCCATTCATTTGCTAAGTGGTTATAA--ACA
TTTTTTGGTCTGATGCATTTGCTTCTGAATCATGACATG--------------TGGT---GTAGTTTA----CCTGGTTA
TGTGCATGTTCATGTAAGGAGAGCAAGGATCCCTGTGAGATGCTAATCTATTTTT--GCCATTAA-ATGACACTATTGAT
CACAATCTTGCTACGGCAGAAACACTATTGATCCATAGCGTCATAATTTTTTATGGGTTAAATAATAGGGATATTATGTC
AAACAATTGAAGCACATTTTATTATTAGTGCAATGCAAATTGATTGTGCAATTTGGGATGTAAGAGCACATTTAGATGGA
AGTCGTGGTAATAGAATAGGAGTACTAAAAATGTTATGTGTGTTCTGTACAGAACGCTTCCCCTTCTATTACATGTCTTG
GCCATATGCAATCATCCACCACATCGGTATCACTA---------------------------------------------
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>chr4A_1424
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--------------------------------------TCAGATGGTGCTCTCTAGATCTAACTTACAGTGCAAGTAGTC
CATTTAACACCAAGTCAGA--AGAAATAAACCATATTCATCCAGGTGATGCCATTCATTTGCTAAGTGGTTATAA--ACA
TTTTTTGGTCTGATGCATTTGCTTCTGAATCATGACATG--------------TGG---------------------TTA
TGTGCATGTTCATGTAAGGAGAGCAAGGATCCCTGTGAGATGCTACTCTATTTTT--GCCATTAA-ATGACACTATTGAT
CACAATCTTGCTACGGCAGAAACACTATTGATCCGTAGCGTCATAATTTTTTATGGGTTAAATAATAGGGATATTATGTC
AAACAATTGAAGCACATTTTATTATTAGTGCAATGCAAATTGATTGTGCAATTTGGGATGTAAGAGCACATTTAGATGGA
AGTCATGGTAATAGAATAGGAGTACTAAAAATGTTATGTGTGTTCTATACAGAACGCTTCCCCTTCTATTACATGTCTTG
GCCATATGCAATCATCCACCACATCGGTAT--------------------------------------------------
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-------------------------------------------------------------------------
>chr1A_1432
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----------------------------------------------TGCTCTCTAGATCTAACTTACAGTGCAAGTAGTC
CATTTAACACCAAGTCAGA--AGAAATAAACTATATTCATCCAGGTGATGCCATTCATTTGCTAAGTGGTTATAA--ATA
TTTTTTGGTCTGATGCATTTGCTTCTGAATCATGACATGTGTTGTAGTTTACCTGG---------------------TTA
TGTGCATGTTCATGTAAGGAGAGCAAGGATCCCTGTGAGATGCTACTCTATTTTT--GCCATTAA-ATGACACTATTGAT
CACAATCTTGCTACGGCAGAAACACTATTGATCCGTAGCGTCATAATTTTTTATGGGTTAAATAATAGGGATATTATGTC
AAACAATTGAAGCACATTTTATTATTAGTGCAATGCAAATTGATTGTGCAATTTGGGATGTAAGAGCACATTTAGATGGA
AGTCATGGTAATAGAATAGGAGTACTAAAAATGTTATGTGTGTTCTATACAGAACGCTTCCCCTTCTATTACATGTCTTG
GCCATATGCAATCATCCACCACATCGGTAT--------------------------------------------------
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-------------------------------------------------------------------------
>chr7A_1712
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-----------------------------CTT-----GCATCATAATTTTTTATGGGTTAATTAACAGGGATATAATGTC
GAACATTTGGAGCACACTTTATTATTAATGCAATACAGATTGATTGTGCAATTTGGGATGTAAGAGCACGTTTAGATGGA
AGTGATGGTAACAGAATAGGAGTACTAAATATGTTATGTGTGTTCTGTACAAAACTCTTTCCTTTTTGTTCCATGTTTTG
GTCATATGCAATCATCCACCACATAGGTATCTCTAGACTGCATGCTTTGATCAGTTTTCATGCTATCCAATTGAAATTTC
TCTGCATTTTGTTGAAACATGGTTGTGTAAGCTTTTGGTTAACCTATAACAGTTAGCTTGTCTTGTATCTATTTGATCAG
TTTTGCTAAAAAATATGAACACACACACACACACATTGTATAAATTTTACATGGATTTACATGATGGGCAATTAGCCTTG
GTCTCCCGCCTCTTCCACTTTTCAGATGG---TATGATTCTAAATTCAG-TTAACATGAATCTTGATAATACT
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS---S----S----S------S----SS---S--S-----------------------------S--S-S---S----
-S--------S---S-S---------S----S----S----------------------S-------S------------
----------------S-------S------S----------------S----------------S--------------
---------S------------------------------S----SS-S--S-S----------S------S-----SS-
----------------------------------------------------------------S---------------
------S--------------------------------------------S--------------S----------S--
--------S-------------------------------------------S------------S--------------
-S-------------S----------S-----S----------SS---------------------------------S-
----------S-SS------------------------------------------------------------------
------------SS-S---SS-----------------------------------------------------------
---S-------S------------------S-------------------------S---S------SSSSS----S---
--------S-----------------------S--S---------------------------S----------------
----------------------------------------------------SSS-------------------------
---S-S--------------S--------S-------------------------S------------------------
--------------------------------------------S-----------S-----------------------
-------------------------------S----------S-S--------S--------S---S----------S--
------------S----S----S--------------------------S------------------------------
----S-------S--S-------------------------------------------------------S--------
-----------------S---SSSSSS-SSSS-----------------------------------------
>forward_640
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------------------------------------------------------------CCGACGAAAGAAAACCAGCG
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>reverse_2232
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-----------------------------------------------------------------------GTAGCCTTG
GTCTCCTGCC---------------------------------------------------------------
