>input_sequence_86683
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----------------------------------------------------------------ATGGCAGGGCAGTTGA
AGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTGGTCGTCGCCTCGTCACTGGTCGGCACGGCCTCCGCGGCCGACGCG
CCCGCCGTGGCGCCCACCTCCGGCGCCACCGCCGCGCCGCCCACCTCCGGCGCCACCGGCGCCGCCCCGGCCTTCGCGGC
CGTGTCGGTCGCGGCCGCGGCGTTCAGCTACCTCTTCTGCTAG-------------------------------------
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----------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G347300
GTGCTTGATATTCCTTCTGCACATGCTTCGGTCCTCCCTGGACATGGTTGGCGACCGCCAGATGCGGGCTTTGTG-AAAA
TTAACACTGATGTCGCTCTCAACATGGATTCAGACAAGGTAGGAGCAGGTGGTGTGGCACGCTCTGACTCTGCCTTGTTG
GAAGCTTGGAGTAAACCACACGTTGGGGTAACGGATCCAT---------TCATCGGTGAGACCCTGGCAATTCGTGATGG
TGTTATCTTTGCTACTCTACGGGTTTTTTCACATGTGATAATGGAGACAGACTGCCTGGAGGTCGTCCACCTCTGGAACA
CTCGCCACGATA-TCTTTCTATAGTGGCACCTTTATTGTTAGAAATTGGAGAGCTAGCTTTCTCTTTTTCTTCTTTTGTT
ATTCAACATGTAAACAGATCAGCCAATGTGCCGGCCCATCTTTGCGCGAAGCATGCTTGCTCGTTGATGGTCATCGAAAG
TTGAACTGGTTCTAGACCTACCTTCCTACTCACCAGCCTATTGACTGATGATGCTAGGAGCTCTTTTGTTGAATAAAG-G
CTCTCAAAAAAAAGACTGCTGTACAAATTCATCCGTATGGAGCAGCTCGCGGTCGCCATAGCAATTGCCAA---------
---ACCTCCCACCGTTTGCACAGCCGCGCGCGGCGGAGGCCAGCAGAGCAGAACGGCAGAGTCGTTGCCACCCACCATGT
GCAATTGCCGGCTGCCGCCCGAATAATTCGCCGGTCCAGCGCAGCGACGGGCCCCGCACCAACTCCCCCCACCCCACGTA
CCGGCGCCGGAAATCACTCGCGCACGCGCCATGAACCCAAGCCAGCCACGCGACAGCCGGCCGTCCTCCCGTTCGCCAGC
TTATATTAGGCAGGCCGGCCTAATCGCAGCTGTATATAAGCCGCTCCCACGCTTCTCCGTCGAAGCACCAACACCGGCGT
CAATCAACAGCAACAAGGCGCCTTCCTCGCCCTCCTCAAGCAAGCGAGAAGCCAAGTCACGAAGATGGCAGGGCAGTTGA
AGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTGGTCGTCGCCTCGTCACTGGTCGGCACGGCCTCCGCGGCCGACGCG
CCCGCCGTGGCGCCCACCTCCGGCGCCACCGCCGCGCCGCCCACCTCCGGCGCCACCGGCGCCGCCCCGGCCTTCGCGGC
CGTGTCGGTCGCGGCCGCGGCGTTCAGCTACCTCTTCTGCTAGGCGTGCGTCCATATGGCGCCCGG-TTGGTGCCGCGGT
GCGCGCGCG--CATGCTATTCTTTTCTGGGATTTGTTGTTGTGGATTCATGAACGTTCCGGTGCAATTTCGTTTCTTGGT
TCGAGCCTTCGAGGTCTGTAGTTGATCGTGTGTGTACAGTGACGATATTGAATTGAATTCATACGTTTCATGTTCATTCG
TTTGCGACTTGCACGTGGTAAAAATCTGGCGGGTTACCTCTCCGTGACAGCCTACTTGAGTTTTTTTTTCTTGTGCATAC
A-------------------------------------------------------------------------------
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--------------------------------------------------------------GGATCTCAACTCTCACGA
ACTCTGTTGACTGTGGATACACCT---------CTGTTACGGACCATGTGGTAGCCGGAACAGCTAGAGTTATAAATCAG
CAGCGATTTATTAGTTGTTGATCTCCAGTGCTGTTTTCTTCAGGGAAAAAACCTAAATACTAGATAGTGTAGATGCACTA
TTTGGCGAAGCCGAGCGCACGCACTCGAGCCACTTGATGCGGCTCGATCTCCCGACAAGTGCAGCTGGTGTGACGCATGG
GACTATTAACACAGATGATGGTAGCATGTGGGGACCATGCCCTCGTGCATATGGATAGCGGGCGCCTATTCACATGCATG
TTTTGACGTTGCTCGTTTATTCCGTTTCAGTTTTTTCAAAAAGCTACAGCATTTGAACCGAGTGTCAGAACTAAGAACTA
TTTTCACCCTTGGATTTCTCATGACCAGCCCTTCAAGACTAGGGGGTTGTTTGGTGGATGTCCTGCACGCAGCGGCAGCT
GCACGCAGCTATCCGGCCGCACCCGAGTTGCACGGTGATGCGTGCAGTTTGATTTGCAAAAGCGCTAAAGCAGTGATACA
TAGTGTAATACAGAGAGATACACTGCGTCGGGACCGTGCAGTGGGCTCGGTCCGTGGTACTTGTCTGGCACGGACAAGAG
ACGTGCCCCGCGCGTGGTGCAAAGTGGGCCATCGGTTCTCTGCACGGCTGGCCCCGGTCGTCTGAAGCTATGTATG
>chr7A_1
GTGCTTGATATTCCTTCTACACATGCTTCGGTCCTCCCTGGACATGGTTGGCGGCCGCCAGATGTGGGCTTTGTG-AAAA
TTAACACTGATGCCGCTCTCAGCATGGATTCAGACAAGGTAGGAGCTGGTGGTGTGGCACGCTCTGACTCTGCCTTGTTG
GGAGCTTGGAGTAAACCCCACGTTGGGGTAACGGATCCAT---------TCATCGGTGAGACTTTGGCAATTCGTGATGG
TGTTATCTTTGCTACTCTACGGGGTTTTTCACATGTGATAATGGAGACAGACTGCCTGGAGGTCGTCCACCTCTGGAACA
CTCGCCACGATAGTCTTTCTATAGTGGCACCGTTATTGTTAGAAATTGAAGAGCTAGCTTCCTCTTTTTCTTCTTTTGTT
ATTCAACATGTAAACAGATCAGCCAATGTGCCGGCCCATCTTTGCGCGAAGCATGCTTGCTCGTTGATGGTCACCGAAAG
TTGGACTGGTTCTAGACCTACCTTCCTACTCACCAGCCTGTTGGCTGATGATGCTAGGAGCTCTTTTGTTGAATAAAG-G
CTCTCA--------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chrUn_1
GTGCTTGATATTCCTTCTACACATGCTTCGGTCCTCCCTGGACATGGTTGGCGGCCGCCAGATGTGGGCTTTGTG-AAAA
TTAACACTGATGCCGCTCTCAGCATGGATTCAGACAAGGTAGGAGCTGGTGGTGTGGCACGCTCTGACTCTGCCTTGTTG
GGAGCTTGGAGTAAACCCCACGTTGGGGTAACGGATCCATCTTTGAGACTCATCGGTGAGACTTTGGCAATTTGTGATGG
TGTTATCTTTGCTACTCTACGGGGTTTTTCACATGTGAAAATGGAGACAGACTGCCTGGAGGTCGTCCACCTCTGGAACA
CTCGCCACGATAGTCTTTCTATAGTGGCACCGCTATTGTTAGAAATTGAAGAGCTAGCTTCCTCTTTTTCTTCTTTTGTT
ATTCAACATGTAAACAGATCAGCCAATGTGCCGGCCCATCTTTGCGCGAAGCATGCTTGCTCGTTGATGGTCACCGAAAG
TTGGACTGGTTCTAGACCTACCTTCCTACTCACCAGCCTGTTGGCTGATGATGCTAGGAGCTCTTTTATTGAATAAAG-G
CTCTCA--------------------------------------------------------------------------
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>chr4A_1
GTGCTTGATATTCCTTCTGCACACACTTCGGTCCTCCCTGGACATGGTTGGCGGCCGCCAGATGTGGGCTTTGTG-AAAA
TTAATACTGATGCCACTCTCAGCATGGATTCAGACAAGGTAGGAGCAGGTGGTGTGGCACGTACTGACTCTGCCTTGTTG
GGAGCTTGGAGTAAACCCCACGTTGGGGTGACGAATCCAT---------TCATCGGTGAGACCCTGGCAATTCGTGATGG
TGTTATCTTTGCAAGTCTGCGGGGTTTCTCACATGTGATAATGGAGGCAGACTGCCTGGAGGTCATCAACCTCTGGAACA
CTCGCCACGATAGTCTTTCTATAGTGGCACCTATATTGTTAGAAATTGGAGAGCTAGCTTCCTCTTTTTCTTCTTTTGTT
ATTCAACATGTAAACAGACCAGCCAATGTACCGGCCCATCTCTGCGCGAAGCATGCTTGCTCGTTGATGGTCACCGAAAG
TTGGACTGATTCTAGACCTACCTTCCTACTCACCAGCCTCTTAGCTGATGATGTTAGGAGCTCTTTCGTTGAATAAAG-C
CTCTCAA-------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr1B_1
GTACTTGACATCCCTTCTTCACATGCCTCGATCCTTCCTGGACACGGGTGGAGGCCGCTAGAAGGTGAGATTGTC-AAAA
TCAATACAGATGCGGCTATAAACATGGACTCCAACAAGGCAGGAGCGGGAGGTGTCGCACGCACAGCCTCGGCTTTGTTG
GGAGCTTGGAGTAAACCCCATGATGGGGTGACGAATCCAT---------TCATCGGTGAGGCCCTGGCCCTCCGTGACGG
TGTCATCTTTGCAAGTTTGCAGGGTTTCTCACATGTGATAATGGAGACAGACTGCCTAGAGGTTGTCAACCTCTGGAACA
CTCGCCACAATAGTCTTTCTATAGTGGCACCTTTATTCTTAGAGATTGGAGAGCTAGCTACTCATTTTAGTTCCTTTGTT
ATTCAGCATGTAAGTAGATCTGCCAACGTACCGGCCCATCTTTGCGCGAAGCATGCTTGCTCGTTGATGGTCATCGAGAG
CTGGACAGTTTCTAGTCCTTCATTCCTACTCACCAGCCTCTTGGCTGATGACGCTAGGAGTTCTTTTGTTGAATAAAAAG
CTCTCAA-------------------------------------------------------------------------
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>chr1B_1
GTACTTGACATCCCTTCTTCACATGCCTCGATCCTTCCTGGACATGGGTGGAGGCCGCCAGAAGGTGAGTTTGTCAAAAA
TCAATACAGATGCGGCTATAAACATGGACTCCAACAAGGTAGGAGCGGGAGTTGTCGCACGTTCAGCCTCGGCTTTGTTG
GGAGCTTGGAGTAAACCCCATGAGGGGGTGACGAATCCAT---------TCATCGGTGAGGCCCTGGTGCTCCGTGACGG
TGTCATCTTTGCAAGCTTGCGAGGTTTCTCACATGTGATAATGGAGACAGACTGCCTAGAGGTTGTCAACCTCTGGAACA
CTCGCCACAATAGTCTTTCTATAGTGGCACCTTTATTTTTAGAGATTGGAGAGCTAGCTACTCATTTTACTTTCTTTGTT
ATTCAACATGTAGGTAGATCTGCCAACGTACCGGCCCATCTATGCGTGAAGCATGCTTGCTCGCTGATGGTCACCGAGAG
CTGGACAGGTTCTAGTCCTTCTTTCCTACTCACCAGCCTCTTGGCTGATGATGCTAGGAGTTCTTTTGTTAAATAAAAAG
CTCTCAA-------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr5D_1
GTGCTTGATATTCCATCTACACATGCTCCGGTCCTCCCTGGACATGGTTGGCGGCCGCCAGAGGTGGGCTTCATG-AAAA
TAAATACTGATGCTGCTCCCAGCATGGATTCAAACAAGGTAGGGGCAGGAGGTGTGGCACGCACTGACTCTGCCTTGTTG
GGAGCTTGGAGTAAACCCCACGTTGGGGTGACGGATCCCT---------TCATCGGTGAGACCCTAGCAATTCGTGATGG
TGTCATCTTTGCAAGTCTGCGGGGTTTCTCACATGTGATAATGGAGACAGACTGCCTGGAAGTTGTCAACCTCTGGAACA
CTCGTCACGATAGTCTTTCTATAGTGGCACCTTTACTGTTAGAAATTGGAGAGCTAGCTTCTTCTTTTTCTTTTTATGTT
ATTCAACATGTAAACAGATCAGCCAATGTACCGGCCCATCTCTGCGCGAAGCATGCTTGCTCGTTGATGGTCACCGAAAG
TTGGACTGATTCTAGACCTACCTTCCTACTCACCAGCCTGTTAGCTGATGATGTTAGGAGCTCTTTCGTTGAATAAAG-G
CTCTCAA-------------------------------------------------------------------------
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----------------------------------------------------------------------------
>chr7A_3
--GCTTGATATTCCTTCTGCACACGCTTCGGTCCTCCCTGGACATGGTTGGCGGCCGCCAGATGTGGGAGTTGTG-AAGA
TTAATACTGATGCCGCTCTCAGCATGGATTCAGACAAGGTAGGAGCATGTGGTGTGGCACGTACTCTCTCTGCCTTGTTG
GGAGCTTGGAGTAAACCCCACGTTGGGGTGATGGACCCAT---------TCATCGGTGAGACCCTGGAAATTCGTGATGG
TGTTATCTTTGCAAGCCTGCGGGGTTCCTCACAGGTGATAATGGAGACAGACTCCCTGGAGGTCGTCAGCCTCTGGAACA
CTCGCCACGATAGTCTTTCTATAGTGGCATCTATATTGTTAGAAATTGGAGAGCTAGCTTCCTCTTTTTCTTCTTTTGCT
ATTCAACATGTAAACAAATCAGCCAATGTACCGGCCCATCTCTGCGCGAAGCATGCTTGCTCGTTGATGGTCACCGAAAG
TTGGACTGATTCTAGACCTACCTTCCTACTCACCAGCCTCTTAGCTGATGATGTTAGGAGCTCTTTCGTTGAATAAAG-G
CTCTCAA-------------------------------------------------------------------------
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>chr3A_579
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------------------------------ATCCGTATGGAGCAGCTCGCGGTCGCCATAGCAATAGCCAAACCTCAGAA
CACACCTCCCACCATTTGCACAGCCGCGCGCGGCGGAGGCCAGCAGAGCAGGACGGCAGAGTCGTTGGCACCCACCATGT
GCCATTGCCGGCTGCCGCGCGAATAATTCGCCGGCCCAGCGCAGCGACGGGCCCCGCACCAACTCCT-CCACCCCACGTA
CCGGCGCCGGAAATCACTCGCGCACGCGCCATGAACCCAAGCCAGCCACGCGACAGCCGGCCGTCCTCCCGTTCGCCAGC
TTATATTAGGCAGGCCGGCCCAACCGCAGCTGTATATAAGCACCTCCCCGGCTTCTCCGTCGAAGCAGCGACACCGGCGT
CAATCAGCAGCAACAAGGCGCCTTCCTCGCCCTCCTCAAGCAAGCGAGAAGCCAAGTCACGAAGATGGCAGGGCAGTTGA
AGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTGGTCGTCGCCTCGTCCCTGGTCGGCATGGCCTCCGCGGCCGACGCG
CCCGCCGTGTCGCCCACCTCCGGCGCCACCGCCGCGCCGCCCACCTCCGGCGCCGCCGGCGCCGCCCCGGCCTTCGCCGC
CGTGTCCGTCGCCGCCACGGCGTTCGGCTACCTCTTCTGCTAGGCGTGCGCCCATATGGCGCCCGGTTTGGTGCCGCGG-
-CGCGCGCGTGCATGCTCTTCTTTTCTGGCATTTGTTGTTGTGGGTTCATGGGCGTTCCGGTGCAACTTCGTTTCTTGGT
T--------CGAGGTCTGTAGTTGATGGTGTGTGTACAGTGACGATATTAAATTGAATTCATACGTTTCATCTTCATTCG
TTTGCATTTGCA--------------------------------------------------------------------
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>chr3D_680
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---------------------------------------------------------------GTTGGCACCCACCATGT
GCCATTGCCGGCTGCCGCGCGAATAATTCGCCGGTCCAGCGCAGCGACGGGCCCCGCACCAACTCCCCCCACCCCACGTA
CCGGCGCCGGAAATCACTCGCTCACGCGCCATGAACCCAAGCCAGCCACGCGACAGCCGGCCGTCCTCCCGTTCGCCAGC
TTATATTAGGCAGGCCGGCCTAATCGCAGCTGTATATAAGCCGCTCCCACGCTTCTCCGTCGAAGCAGCGACACCGGCGT
CAATCAACAGCAACAAGGCGCCTTCCTCGCCCTCCTCAAGCAAGCGAGAAGCCAAGTCACGAAGATGGCAGGGCAGTTGA
AGGCCAAGATCCTCGCCGCGGCCGCCGTCGCCGTGGCCGTCGCCTCGTCCCTGGTCGCCACGGCCTCCGCGGCCGACGCG
CCCGCCGTGTCGCCCACCTCCGGCGCCACCGCCGCGCCGCCCACCTCCGGCGCGACCGGCGCCGCCCCGGCCTTCGCCGC
CGTGTCCGTCGCCGCCGCGGCGTTCGGCTACCTCTTCTGCTAGGCGTTCGTCCATATGGCGCCCGGTTTGGTGCCGCGG-
-CGCGCGCG--CATGCTCTTCTTTTCTGGGATTTGTTGTTGTGGGTTCATGAGCGTTCCGGTGCAATTTCGTTTCTTGGT
T--------CGAGGTCTGTAGTTGATCGTGTGTGTACAGTGACGATATTAAATCGAATTCATACATTTCATGTCCATTCG
TTTGCATTTGCATTCGT------------------------------------------GTTTTTTCTTTTTGTGCATAT
GCGATCGAGTATATAGCAAAAAAAAACTACCACATTATAGACTATCATTTTAAAAAACTATCTTTTTTTTAATCTTTCAA
AAAACTACCACAAAAGTGATAGGCTGTTCCGAAAAACCCAAATGACCAGGCAATTTAGAAATAATCCGGTTTATGATAGG
TCAGGCCCGCTCTTAAACAAATCGTTAGTTGACTGTTTGTTTGACCGTTAACTTACATCTGGGCCACATGGGCCACATGT
AAGTTCTCTCTCTCACCCTTATCTTCCTTCTCCCCCTCTTCTTCCCTATCACTCTCCCGAGCCATTGCCGGGCACCATCA
AGGGCTGCCGCAGCCAGCACCACACCCCGGCACAGCCACGGCCGCCGCCACCTAGGCCGGCCACCACCACGCTATGGACA
CGAAGATGGAAAGAGGGCGGTGGATGGGCAGCTCAGAGCGGCCCGCTGGTGGTCGGAGTCGAGCTCGTACTCCATGACAG
CACCCACGCCGCCGCAGAGAGGACGGGAAGGAGCTCCGCGCCGCCGGACGCCACCAGGACGCGCCTCGCTTAGCTTCGCG
CCGCCGGACAGCTCCACGCCGGCAGGACGCGGCTCTGCCTAGCTCCGCCCAGCAGAAAGGAGGAGGAGCTCCACACCGCC
GCCGCTTAGCTCCGCGCCGCCGGACAGCTCGAGCACGGGCGGAGAGCAGCCAAGGAGCACGGCCGGTTCCAGCCCGCCGC
CGCTGCTGATTCCCGCCGGCCACGGCTGTTGCAGCTAGTAGCCATCTACTCCGGGCGTATTGCTGGCCGGCCCTGGCGAC
GAGCTCGCCGGCGTGGTGCTGGCCGGCTCCGGCGAGGACCCGATTGCTTCTTTTTTATTTTTCAGGACCCGATTGCTTTT
TATATTCTTTTCAGGGGCTTGATTGCTTTTAGTTTTCATTGTAGGGACCTGATTGCATGCCAAAAATATTTGGGCCCCAC
CTGTCATAACATGTCAATGGTCAATCTAACGGTCATACTTAACGGTCAACCCGATCTGTCATAATAACGTTTAAAGTTAA
GTAATATAGTCATCAGTGCGACATAGTAGTTTTTTGAAACAGCCCACCACTTTTGTGGTAGTTTTTTGAAAAGTTAAAAA
AAGCGGTTGTTTTTTAAAACGATAGCTTGTAATGTGATAGTTTTTTACTATATACTCATACGGGATCCCAACTCTCACGA
ACTCTGTTGACTGTGGAAGTGTGGATACACCTCCTGTTACGAACCATGTGGTGGCCAGAACAGCTAGAGATACATATCAG
CAGCGATTTATTAGTTGCTGATGTCCTGTGCTGTTTTCTTCATGGAAAAAA-----------------------------
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>SNPs
-----------------------------------------------------S----------S---------------
------------S-------------------------------------------------------------------
-S---------------S--------------------------------------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------------------S-------------------
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---S-----------------------------------S---S------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSS-----------------------------------S--------------
-------------S-------------------------------------S---------------S------------
--S---------------S-------------------------------------------------------------
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-------------------------------------------------------------------S-S----------
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-------------------------------------------------S------------------------------
---------S-------------------------------------------------------------------S--
------S-----S------------S-----------------------------------------------------S
S----------------S--------------------------S-------S---------------------------
-SSSSSSSS----------------------------------------S------------------------------
-----SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--S---------S
S-------------------------------------------------------------------------------
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-------------------------------------------------------------------S------------
-----------------SSSSSSS-----------------S----------S---S------------S--S-S-----
-----------------S----S---S---------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_654
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--------------------------------------------------------------------------AATTGC
CAAACCTCCCACCG------------------------------------------------------------------
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>reverse_3337
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--------------------------------------------------------GTACTTGTCTGGCACGGACA----
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