>input_sequence_86632
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--------------------ATGGGGAACAGTGCATCTGCAACAACCGTTACCCCAACTGCAGAAGAAAAAACCGGGCAA
GCTCCAGCGCCTGACACGAAGCCGAAGAAGAAGATATGCTGCGCCTGCCCCGACACAAAGAGGCTGAGGGACGAGTGCAT
CGTGGAGCATGGCGAGGACGCGTGCGGGAAGTGGATCGAAGCCCATCGCCTATGCTTGAGAGCCGAAGGGTTCAACGTCT
GA------------------------------------------------------------------------------
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>chr5B_1_TraesCS5B01G222900
TGATGCACAATACCAAAAGCAAAGCTGTGCTATAACTTACTGCCTGAGCTAGGCTGCCTAGACATTTGCTGTAGATCCTG
---------AACATTTGAAGATGTTTAAAGTTATATGGTCTTAATATAGCAGTCTGCCCTC-TTTACAAAAAGGTTGTCT
ATGCA--------AATCATGGAACCCAAGGATCTGTTGTTTCCCTTGATTTTACTTGCCATTAACTGTAGCTCTGTAAGC
TCCATTTGGGTTGATCATAAGTAGTTTGTTACCTCAACATCTCGAACGGTGTTGACAACACTGTTAAGGTACATACTACG
TAGCCAATTTTGATTGGATATAAGATGCCTATTTCGCCATTGGCCCTT--------------------------------
---TTTTCTCCTGCAACTATTGTAGCTGTGTTGTTCTTCTGAGACTCCTGATATTGCCACAAGGAGCTA-----------
-------------------------------------------------------------------------GTATGTT
GCGATTCTGTTCCATTGTCTGGATACTGTATACGCTGCAAGTGATCGT--AAAATTTTGCTGGCATACACTACTTAGCTT
TCGAATTGGATGAATTCTGAACTTATTGAAATTGGTGGTCCCACTATGCACTACATAATCTGATACTGATACTTTGTTGC
CTTCTAAGAACCGGTTAATCAAAATTGTGTTGTCTTCTAAAAAGTACACTACTAGGTTCAGGGTTCAAAAACATCCATGG
TTCAGATTCCGTGATGCTGTTGATTTCCATTATCTGAATATACTGTTTACACTGAACATGATCATACCAAAGTTCACTAG
CAGGTGGTACTACTTAGCTTTCAAATTGGGTATGTTCTGAACATGTTGAAACAAGTAAATCCCAGCACGTAAATGAATTA
TGTGTAGGCTTTTCAAAGTCCAGGCAACGAAAACTGTGTACCCTCTAAAA-TACTAGCAGGTTCAGTGTTCTAAAGCCCC
TGTGGTTCATCCCTGAACAATCGAGCTGTTGGTCTTCTTGCCTCGTTTTGTTTTGACAGTTGACACTGATGTGGTACCAT
TACGATTTATTTCAGAGGGGATGGGGAACAGTGCATCTGCAACAACCGTTACCCCAACTGCAGAAGAAAAAACCGGGCAA
GCTCCAGCGCCTGACACGAAGCCGAAGAAGAAGATATGCTGCGCCTGCCCCGACACAAAGAGGCTGAGGGACGAGTGCAT
CGTGGAGCATGGCGAGGACGCGTGCGGGAAGTGGATCGAAGCCCATCGCCTATGCTTGAGAGCCGAAGGGTTCAACGTCT
GATACGTTCATAGC-GGCTCTAGACTTGCTCCTG---TGGTTCTGGACGACGAACAATGTCAGTTAACAGTTTCATCTCT
GGGCATTCCAGTTTGCGGGAAGGGATGTTTT-CCCCCTAATAGGCATTCAT-GCCACAGATAATGTATGAAATTTTGTTA
TAG-TGGTACTGTGTTTGGCTT-CTCCAAATGGTGTTATTTTTTGGAGACATTCTTGTTTCTTCCTGTCCACTGGTTGCA
CTGGCCACTGA---------------------------------------------------------------------
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-----------------------------------------------------------------------------ATT
ATCGTGATAGCATAGTA---CTGCTTACGGTCCCCCGTTCGTAATTCTGTTGCCGGCGCC-------TGTTGCCTCCTTT
GGCTGAACCGAGCAGCACCACACGGTTTGCTGGTCACGGTGTTGTGGAATATGTGCTCGTATCGTGTGGA----------
TGGACGCAGCTGGGTTGTGCGCGCCGTCAGCTTTTTATTTCTGGCGGCGGGGGCTGCGTGGTATGTAAGCA-------GA
TGCTGAACTTTGAGTAGACGAGTTTACGTGCGACGCAGA---------CCGTTGGTTCGCGAACGCTACCACGCGAACTG
ATTCGTTT----GTGCGCCCCTGGGTTTTGTGTGCACGGGTATGCCAGTAGGTGATGTCAGAAAAAAAATAACTTCTTTC
CCAAAAGAGTTGCAGGAAAGAAAAAAAAATTGCGAACCAACTTGGGGCCTCTTTGATTCACAGAATTTTTTTTTATTTTT
GGTGAAATTTTTTATCAGTTCATAATCAAATCATGACAGTATAAGTATAGAGATCACGAGAGATAAC---AAAAAATACA
ACCAAATATATGGACCATCTAACGACGATTACAAGCACTGGAGAGAGCCGAAGAAGCGCCACAATCATCGTCCTCCCTCA
CTAGAGCTAGGCAAACTTTATGGTAGT-AACGGTCGGGAAGTCATCGTGCGAAAATCTCATAGGACCAGCGCTCCCGAAT
AGCAATCGTCGAGGATCAAACTTGGAAGACATTACTCCTATTGAGGGACATTGCCGCAACCACACATCCTTAACCAAGAC
>chr5A_1
TGATGCACAATACCGCAAGCAAAGCTGTGCAATAACTTACTGCCTGAGCTAGGCTGCCTAGACATTTGCTGTAGATCCTT
CAA---------ATTTGAGGATGGTTAAAGTTATACGGTCTTAATATAGCAGGCCGCCCTCTTTTACAAAAGGGTTGTCT
ATGCAAAATTGCCAATCATGGAACACAAGGATCTGTTGTTTCCCTTGATTTTGATTGCAAATCATGGAATTACAAAAGGC
TCCATTTGGATTG----------GTTTGTTACCTCAACATCCCGAATGGTGTTGACAACACTGTTAGGG-------TACA
TAGCCAATTTTGATTGGATAGGATAT--CTATTTCGCCATTGGCCCTT--------------------------------
---TTCTCTCCTGCAACTATTGTAGCTGTGTTCTTCTTCTGAGACTCCTGTTATTGCCACAAGGAGCTA-----------
-------------------------------------------------------------------------GTATGTT
GCTATTATGTTCCATTGTCTGGATACTGTATACGCTGCAAGTGATCATACAAAATTGTGCTGGCATACACTACTTGGCTT
TCGAATTGGCTGAATTCTGAACTTGTTGAAATTGGTGGTCCCACTATGCACCACATAATCTGATACTGGTACTTTGTTGC
CTTCTAAGAGCCGGGTAATGAAAATTGTGTTGTCTTCTAAAAATTACACTACTAGGTTCAGGGTTCAAAAACATCCATGG
TTCAGATTCCGTGATGCTGTTGACTTCCATTATCTGA--ATACTGTTTACACTGAACATGATCATACAAAAGTTCACTAG
CAGGTGGTACTACTTAGCTTTCAAATTGGGTATGTTCTGAACATGTTGAAACAAGTAA-TCCCAGCACATAAATGAATTA
TGTGTAGGCTTTTCAAAATCCAGGTAACGAAAACTGTGTATCTTCTAAAAATACTAGCAGGTGCAGTGTTCTAAAGCCTC
TGTGATTCATCCCTGAACAATCAAGCTGTTGGTCTTGCTGCCCCGTTTTGTTTTGACATTTGACACTGATGTGGTACCAT
TACGATTAATTTCAGAGGAGATGGGGAACAGTGCATCTGCGACAACCGTCGCCCCAACTGCAGAAGGAAAAACCGGGCAA
GCTCCAGCGCCTGACACGAAGCCGAAGAAGAAGATATGCTGCGCCTGCCCCGACACAAAGAGGCTGAGGGACGAGTGCAT
CGTGGAGCATGGCGAGGATGCGTGCGGGAAGTGGATCGAAGCCCATCGCCTATGCTTGAGAGCCGAAGGGTTCAACGTCT
GATACGTTTAAGAGCGTCGCAC------------------TTCTGAACGACGAACAATGTCGGTTAACAGTTTGATCGCT
GGGCATTCCAGTTTGCGGGGAGGGGTGTTCTCCCCCCTAATAGGCATTCAGCGCCACAGATGATATATGGAATTTTGTTA
TAAATGGTACCGTGTTGGGCTTTCTCCAAACGGTGTCATTGTTTGGAGACATTCTTGTTTCTTCTTGTCTGCTGGTTGGG
CTGGATTTTTCACTGAACTAGATGATACCCCGCACGTTGTTGCGGAAACATTTGCAATACATTTCGATGATATGTGATTT
CTATGGAACGTGAATAGTGATACTATGAAAACTAAAATTGCAAATCCATATGCTTTATTGTGTTTGATTAATGTATTGTA
AAATATCTAATATATGTTTGCATGTTGAGGTGGATATTTCCATGTGCATGAATGCATGTTGTGGTAGGCCTTTTGCCATG
CATGTTGCTTGATGATGTGACATGCTTACATGTTGAGAGAAATATGTTAGTGGGGGCTAGCTATTTAGATATAGAAGATT
ATCGTGCTAGCATAGTAATGCTGCTTACGGTCCCCCGTTTGTAATTCTGTTGCCGGCGCCTGTTGCCTGTTGCCTCCTTT
GGCTGAACGGAGCAGCACCACACGGT--------------GTTGTGGAATATGTGCTCGTAACGTGTGGA----------
TGG----------GTTGGGCACGCCGTCAGCTTTTTATTTCTGGCGGCGGGGGCTGCGTGGGATGTAAGCA-------GA
TGCTGAACTTTGAGTAGACGAGTTTACCTGCGACGCTGCCGACGCAGCCCGTTGGTTCGCGAACGCTACCACGCGAACTG
ATTCGTTTGTGCGTGCGCCCCTGGGTTTTGTGTGCACGGGTATGCCAGTA---------------------ACTTCTTTC
CCGGAAGAGTTGGCAGGA--AAGAAAAAAATGCGAACCAACTTGGG-CCTCTTTGATTCACATTTTTTTTTC--------
GGTGAAATTCTTGATCTGTTCGTAATCAAATCACGACATTT------TAGATATCACAAGAGATATAACAAAAAAATACA
ACCAAATATGTGGACCATCTAAGGAGGAATACAAGCACTGAAGTGAGTCGAAGGTGCGCCACCATCATCGTCCTCCCTCA
CTATAGTTGGGCAAACTTTATGGTACTAAACGGTTGGGAAGTCGTCGTGCGAAAATCTCACAGGACCAGTGCCCCAGAGC
AGCAATC-------------------------------------------------------------------------
>chr5D_1
TGATGCACAATACCACAAGCAAAGCTGTGCAGTAACTTACTGCCGGAGCTAGGCTGCCTAGATATTTGCTGTAGAATTTG
AGATCCTTAAACATTTGAAGATGTTTAAAGTTATACGGCTGTAATATAGCAGGCCACCCTCTTTTACAAAAGGGTTGTCT
ATGCA--------AATCATGGAACACAAGGATCTGTTGTTTCCCTTGATTTTACTTGCCC--------------------
----TTTGGGTTGATCATAACTATTTTGTTACCTCAACATCTCGAATGGTGCTGACAACA--------------------
----------------------------CTATTTCGCCATTGGCCCTTCTTTATTTTTATTTTTTTTAGAACCATTGGCC
GTTTTTTCTCCTGCAACTATTCTAGCTAGGTTGTTCTTCTGA-ACTCCTGTTGTTGCCACAAGGAGCTACTCCCTCCGTT
CCAAAATAGATGACTCAACATTATACTAAAGTTAGTATAAAATTGAGTCATCTATTTTGGAACGGAGGGAGTAGTATGCT
GCTATTCTGTTCAATTGTCTGAATACTGTATACGCTGCAAGTGATCATACAAAATTGTACTGGCATACACTACTTAACTT
TTGAATTGGCCGAATTCTCAACTTATTGAAATTGGTAGTCCAACTAAGCACTATAAC-TCTGATACTGATACTATATTGT
CTTCTAGAAGCC-GGTAATGAAAATTGTGTTGTCTTCTAAAAATTACACTACCAGGTTCAGTGTTCGAAAGCATCCATGG
TTCAGATCTCGTGATGCTGTTGACTTCCATTATCTGA--ATTCTGTGCACACTAAACATGATCATACAAAAGTTCACTGG
TAGGTGGTA--------------------GTAAGTTCTGAACATGTTGAAACAAGTGA-TCCCAGCACGTAAATGAATTA
TGTGTAGGCTTTTCAAAATCCAGGTAATTAAAACCGTGTATCCCCGAAAA-TACTAGCAGGTTCGTTGTTCTAAAGCCTT
TGTGATTCATCCCTGAACAATCAAGCTGTCTGTCTTCCTGCCCCGTTTTGTTTTGACA-------CTGATTTTGTACCTT
TATGATATTATTCCA--GATATGGGGAACAGTACATCTGCTACAACCGTCACCCCAGTTGCAGAAGAAAAAACAGGACAA
ACTCCAACGGCTGACACGAAGCCAAAGAAGAAGATATGCTGCGCCTGCCCTGACACAAAGAGGCTGAGGGACGAGTGCAT
CGTGGAGCATGGCGAGGACGCGTGCGGGAAATGGATCGAAGCCCATCGCCTATGCTTGAGAGCCGAAGGGTTCAACGTCT
GATACGTTCATAGCGGGCTCTAAACTTGCTCCCGTCTTGGTTCTAAACGACGAACAATGTCGGTTAACAGTTTGATCGCT
GGGCATTCCAGTTTGCGGGGAGGGATGTTCTCCCCCCTAATAGGCATTCAGCGCCACAGATGATATATGGTGTTAT----
--AATGGTACTGTGTTGGGCTTTCTCCAAACGGTGTCATTGTTTGGAGACATTCTTGTTTCTTCCTGTCCACTGGTTGCA
CTGGCCACTGA---------------------------------------------------------------------
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-----------------------------------------------------------------------------ATT
ATGGTGATAGCATAGTA---ATGCTTACGGTCCCCCATTCGTAATTCTGTTGCCGGCGCCTGTTGCC--TTGCCTCCTTT
GGCTGAACGGAGCAGCACCACACGGTTTGCTGGGCACGGTGTCGTGGAATATGTGCTCGTATCGTGTGGATGGACGCAGT
TGG----------GTTGTGCACGCCGTCAGCTTTTTATTTCTGGCGGCGGGGGCTGCGTGGTATGTAAGCAGATCGCCGA
TGCTGAACTTTGAGTCA----------------------------------------------------CACGCGAACTG
ATTCGTTT----GTGCGCCCCAGGGTTTTGTGTACACGGGTATGCTCGTAG-----------------------------
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>SNPs
---------------S--------------S-------------------------------------------------
-----------------------------------S----------------S-S----------------S--------
------------------------S-----------------------------------S-S-SS-S-SSS-SSS-S--
--------------------S-------------------------S-------------------S--SSSSSSS---S
--------------------SS-S--SS----------------------------------------------------
--------------------------------------------------S-----------------------------
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--S-------------------------------------------S---------S-----------------------
---------S----------------------------------------------------------------------
---------S----S----S-----------------------S------------------------------------
-----------------------S-------------SS----------------------------S------------
----------------------------------------------------------S---------------------
-----------------S------S---------------S-------------------------------------S-
----S-----------------S--------------S----S---------------S---------------------
------------------S---------------------S--------S------------------------------
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----------------------S---------S------------S---------------S-----------S---S--
-------------------S---------S--------------------S----------S--S----S----------
--S-------------S-------------S-----S---S---------------------------------------
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--------S------------------------S----------------------------------------------
---SSSSSSSSSS-------S-----------------------------------------------------------
---------------------------S--------S-S-----------------------------------------
---------------------------------------------------SSSSSSSSSSSSSSSSSSSS---------
--SS--------SSS-S-SS--S------S----------------S---------------SSS------SSSSSSSSS
---------S--S---S----S-----------S----S-SSSSSSS----S-----S-------SS-------------
---------S------------S--S--S-----------S--S---S-----SS-------S-----------------
---S--S-S----------------S--------S--------S----------------S--------S--S--S--SS
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1083
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-----------------------AGCTGTTGGTCTTCTTGCCT-------------------------------------
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>reverse_2679
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--------------------------------------TATTGAGGGACATTGCCGCA----------------------
