>input_sequence_86624
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--------------------------------------------------------------------------ATGGCG
TTC---CCGGCGTGCGTGCAGTGCGGGACGAGGGAGAACCCGTGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGT
GGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCGCGGTGGTGTACCTGTTTCGCCACCGCAAGGGCCGCCGC
ATCATGGGACATCCCTCCAGGGTCGTCTACCCGCGCGTCTCCAGGGCCATCCCCATCTAA--------------------
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>chr5A_1_TraesCS5A01G033900
ATTTTTTATATTTCAAATGGCGGTATTGTTCATGTCCGG----GCTCATCTGAGCCCGGGCACCAAATCGCCGCTCTCGG
AAGAACAAGGTTCCTTGATAAGGGGGAAGAGGGTACATGTCGTAGCGCGAGTTCTGTACCAAGGTGCGCGCATTAGGAAA
GGAAAAAAGATACCCGACACGTTATGAGGGGTGGATAATTTGCAAAACCTTAGCGTTAAATTATACTATGAGCTTATCCC
CGTAA-AAAAACTATACGCGCTTAAAACTTGTTAAACTCATGGCCACATCGTATTGTGCCTTAAAGAGAAATATCAGGTA
TTGTTGAGTGTGATTTTTGTTCGAGGGCATTGCAAATTGCGTGCCTTGGCTTCATAAAAGATAGAGATGTAAATTTGAAA
CTTTTATTATATCCTCTGACCCGCCTTATTTCAACCAAATGAACTAAAATTTCAGAACTTC-------------CAGGTT
TCAAATCTGCATCTAGTGTAAAGGCAGACCACATGCATTGTTAGGTGTGATTTAAAGTTGTCTTTCTGGCTTATTTTTCT
GTAATATATAACTCGGCCGACGTCCGAACGTTTGGGACCAGCGGAAGATGCCGACTGCACGAAATAAGTAGTATTGTGAT
TGAAAGTTATCTCTGTAAAGTGATTTGGACAGAATAATACCTTGCCAACTTCATCAAATAGTATTTCTTTCGCCGTCGAC
CGGGAGGAATCCCATACGTGAGGGC-AGCACCAGAAGGCTCCAAGGGCCAAACAGAGACACGTCTGAGCTGGGGATATGT
GCTGCGCTCACCAGTGCAAATGTGCAACGCGGCAGTAAACCACTTGGATAACCACT---------------GCTACGCGT
CCCCGGCGCAAAGCCTCTATATATTGGCCTGCCGGGGGCGACGCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACC
ATAACCGGAAAACCGAGAGCTCGGCCGACAAGCACAGATTCATCAAGCAGCAGAGCAGGAGCTAGGTAGCCGCCATGGCG
TTC---CCGGCGTGCGTGCAGTGCGGGACGAGGGAGAACCCGTGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGT
GGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCGCGGTGGTGTACCTGTTTCGCCACCGCAAGGGCCGCCGC
ATCATGGGACATCCCTCCAGGGTCGTCTACCCGCGCGTCTCCAGGGCCATCCCCATCTAATCCTAAGCTTATCCTAGTCT
AATCCCTTCC--------TGTATGT----TGTAACCTGGTCATTCCGTCTGAGTTGTGTGCATGATTGATGAAGAAGATT
-CAATAAAATGGGTG--TTGT-TTGTGTTTGTCTTGTAATCTAAGGCGTTTGCAGTGTCTATATGCTTTGTGAGGAGTTT
GCTATAAATTTGGTTAGTG------GATCGCTGGGTTAACT-GACTGAT--------ATAGGAGTTCGAGATACATGTTA
--ATATAGCAGAGGCCAACGCACGAGAGTCGTTCTCATCAATATTATTCTCGTCTCCCATCTTTCTTTTTT---ATGTGA
ATAGCAGAGGCTCTGCCTTTGCATCATAGGGCAAAGGAAGTATTACAGAATACATTGCCTTTGCATCATAGGGCAAAGGA
AGTATTACAGAATACATTCATGGCCAAAACACCCACGTATAATAGCACTACTGTTGAGTATATTTGTGTTGCTTGTATCA
TGTATACTGTGGCTCACTTTCTAGTCATGTATAGTTGAGGTTAAGGTCCTGCGTGTACTTATATATACGTGCACCGACAC
CC-ATCAATACAACGAATATTGTATTACTAAACCGTCTCTCTACATGGTATCATCATTTAGGAATATTGTATTACTAAAC
CGTCTCTCTACATGATATCATCATTTAGGTCTCTGCACTAGGGTT---------------CGCCGCCGCGCCCTCTCGCG
CGAGCCGCCGTTGTCGCT----------------GCCTCACCCCGCCGCCGCCGCGCCCTTCCCCCGTCACGCTGCCGCC
GCCCTGTGCCGC--------------------------------------------------------------------
----------------------------------------------------CCGCTTCCGCCTCCTGCAGCGCCGACCC
GCCACCGCCGCGCGCCTCCTGATCGTGCCACTGCCGCCCCGTCGC-----------------------------------
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-------------------------------------------------------GCCCTGCCTCTCCTCCCTACCGGCC
GCTGCCTCCTCTTCTTCCCGCAGCCGCCGCACCTCACCGCCGCCGCTG-TCCCAACCACCACCGAAACCCTAACCCGTCG
CGCCACCCCACCCCGCCGCGCCAATGGAAATAAATATAAGGAAATAAATAATAATTTTA
>chr5D_3
--TTTTTCTATTTCAAATGGCGGTATTGTTCATGTCCGGTATGGCTCATCTGAGCCCGGGCACCAAATCGCCGCTCTCGG
AAGAACAAGGTTCCTTGATAAGGGGGAAGAGGGTACATGTCGTAGCGCGAGTTTTGTACCAAGGCATGCGCATTAGGAAA
GGAAAAAAGATACCCGACACGTTATGAGGGGTGGATAATTTGCAGAACCTTAGCGTTAAATTATACTATGAGCTTATCCC
CGTAAAAAAAACTATACGCGCTTAAAACTTGTTGAACTAATGGCCACATCGTATTGTGCCTTAAAGAGAAATATCAGGTA
TTGTTGAGTGTGATTTTTGTTCAAGGGCATTGTAAATTGCGTGCCTTGGCTTCATAAAAGATAGAGATGTAAATTTGAAA
CTTTTATTATATCCTCTGACCCGCCTTATTTCAACCAAATGAACTAAAATTTCAGAACTTCGGAGGGCACCCTCCAGGTT
TCAAATCTGCATCTAGTGTAAAGGCAGACCACATGCATTGTTAGGTGTGATTTAAAGTTGTCTTTCTGGCTTATTTTTCT
GTAATATATAACTCGGCCGACGTCCGAACGTTTGGGACCAGAGGAAGATGCCGACTGCACAAAATAAGTA---TTGTGAT
TGAAAGTTGTCTCTGTAAAGTGATTTGGACAGAATAATACCTTGCCGACTTCATCAAATAGTATTTCTTTCGCCGTCGAC
CGGGAGGAATCCCATACGTGAGGGC-AGCACCAGAAGGCTTCGAGGACCAAACAGGGACACGTCTGAGCTGGGGATATGT
GCTGCGCTCACCAGTGCAAATGTGCAACGCGGCAGTAAACCACTTGGATAACCACT---------------GCTACGCGT
CCCCGGCGCAAAGCCTCTATATATTGGCCTGCCGGGGGCGACGCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACC
ATAACTGG-AAGCAGAGAGCTCGGTCGACTCAGCAAGG----------AGCAGAGCAGGAGCTAGGTAGCCGCCATGGCG
TTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCGTGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGT
GGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCGCGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGC
ATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCCAGGGCCATCCCCATCTAATCCTAAGCTCATCCTAATCT
AATCCCTTCC--------TGTATGT----TGTAACCTGGTCATTCCGCCTGAGTTGTGTGCATGATTGATGAAGAAGATT
-CAATAAAATGGGTG--TTGT-TTGTGTTTGTCTTGTAATCTAAGGCATTTGCAGTGTCTAT--GCTGTGTGAGGAGTTT
GCTAGAAATTTGGTTAGTG------GATCGCTGGGTTAACT-GACTGAT--------ATAGGAGTTCCAGATACATGTTA
--ATATAGCAGAGGCCAACGCACGAGAGTCGTTCTCATCAATATTATTCTCGTCTCCCATCTTTTTTTTTT-TGATGTGA
ATAGCAGAAGCTCTGCCTTTGCATCATAGA------------------------------------------GCAAAGGA
AGTATTACAGAATACATTCATGGCCAAAACACCCACGTATAATAGCAGTACTGTTAAGTATATTTGTGTTGCATGTATTA
TGTATATTATGGCCCACGTCTTAGTCATGTATAGTTGAGGTTAAGGTCCTGCCTATACTTATATATACGTGCACCGGCAC
CC-ATCAATACAATGAATATTGTATTGCCAAACCGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTGCCTCTCCTCCCTACCGGTC
GCTGCCTCCTCTTCTTCCCGCAGCCGCCGCACGTCACCGCCGCCGCTGCTCCCAACCACCACCGAAACCCTAACCCGCCG
CGCCACCCCACCCCGCCGCGCCAATGGA-------------------------------
>chr5B_709
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------GAATCCCATACGTGAGGGC-AGCACCAGAAACCTCCAAGGCCCCAACAGAGACACGTCTGAGCTGGGGACATGT
GC-----------------------AACGCGGCCGTCAACCACTTGGATAACCACCTGCTACGCGCACAGCGCCACGCGT
CCCCGGCGCAAGGCCTCTATATATTGGCCTGCCGGGCGCGACGCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACC
ATAACCCGAAAACAGAGAGCTCGGCCGACAAGCACAGATTCATCAAGCAGGAGA-----------------ACCATGGCG
TTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCGTGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGT
GGCCTTCCTGGTCAC-CGGCGTCATCGAGTGGCCGGTGGGCGCGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGC
ATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCCAGGGCCATCCCCATCTAATCCTAAGCTCATCCTAATCT
AATCCCTTCC--------TGTATGT----TGTAGCCTGGTCATTCCGCATGAGTTGTGTGCATGATTGATGAAGAAGATT
-CAATAAAATGGGTG--TTGT-TTGTGTTTGTCTTGTAATCTAAGGCATTTGCAGTGTCTAT--GCTGTGTGAGGAGTTT
GCTAGAAATTTGGTTGGTG------GATCACTGGGTTAACT-GGCTGAT--------ATAGGAGTTCCAGATACATGTTA
--ATATAGCAGAGGCCAACGCACGAGAGTCATTCTCATCAATATTATTCTCGTCTCCCATCTTTTTTTTTTTTGATGTGA
ATAGCAGAAGCTCTGCCTTTGCATCATAGG------------------------------------------GCAAAGGA
AGTATTACAGAATACATTCATGGCCAAAACACCCACGTATAATAGCAGTACTGTTGAGTATATTTGTGTTGCATGTATTA
TGTATATTGTGACCCATCTCCTAGTCATATATAGTTGAGGTTGAGGTCCTGCCTGTACTTATATATACGTGCACCGGCAC
CCCATCAATACAATAAATATTGTATTGCCAAACCGTCT------------------------------------------
-----CTCTACATGATATCATCCTTTCGGTCTCTGCCCTAGGGTTCGCTGCCGCCGCCAACGCCGCCGCGCCCTCTCGCG
CGAGCCGCCGCTGTCGCCGCCGCACCCCACCACCGCCGCACCCCGCCGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCTTCCGCCTCCTGCAGCGCCGACCC
GCCGCCGCTGCTCGCCTCCTGATCGCGCCACCGCCGCCCCGTCGC-----------------------------------
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-------------------------------------------------------GCCCTGCCTCTCCTCCCTACCGGCC
GCTGCCTCCTCTTCTTCCCGCAGCCGCCGCACCTCACCGCCGCCGCTGCTCCCAACCACCACCGAAATCCTAACCTGCCG
CGCCACCCCACCCCGCCACGCCAATGGA-------------------------------
>chr5D_711
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--------ATCCCATACGTGAGGCAAAGCACTAGAAAACTCCAA-GGCCAAACAGAGACACGTCCGAGCTGGGGATATGT
GCTGGTTCTGCGCTTCCCCC-GTGCAAGTGTGCCGTCAACCACTTCGATAACCACC-GCTACGCGTACAGCTCCACGCGT
CCCCGGCGCAAAGCCTCTATATACTGGCCTGCCGGC-GCGAGGCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACC
ATAACTTG-AAACAGAGAGCTCGGATTCGGCAAGGAGCTTGCT-----AGGTTA-----------------GCCATGGCG
TTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCGTGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGT
GGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCGCGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGC
ATCATGGGCCACCCCTCCAGGGTCGTCTACCCGCGCGTCTCCAGGGCCATCCCCATCTAATCCTATTCTCATCCTAATCT
AATCCCTTCC--------TGTGTGTATGTTGTAACCTGCTGC----------GTT-TGTGCATGATTGATGAAGAAGATT
TCAATAAAATGGGTG--TTGTTTTGTGTTTGTCTTGTAATCTAAGGCGTTTGCAGTGTCTATATGCTTTGTGAGGAGTTT
GCTACAAATTTGATTAGTAGTAGTAGATCGCTGGGTTAACTTGACTGATTGGGCCAAATACGAGTTCGAGATACAGAGGT
TCATATAGCAGAGGCCAGCGCACCAGAGGCTTTCTCGTCAATATTA----------------------------------
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>chr5B_711
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--------ATCCCATACGTGAGGCAAAGCACTAGAAAACTCCAA-GGCCAAACAGAGACACGTCCGAGCTGGGGATATGT
GCTGGTTCTGCGCTTCCCCC-GTGCAAGTGTGCCGTCAACCACTTGGATAACCACC-GCTACCCGTACAGCTCCACGCGT
CCCCGGCGCAAAGCCTCTATATACTGGCCTGCCGGC-GCGAGGCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACC
ATAACTTG-AAACAGAGAACTCGGATTCGGCAAGGAGCTTGCT-----AGGTTA-----------------GCCATGGCG
TTTGTGCCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCGTGCCGGTGCAAGTTCATTGGGCCCACGCTGGGGTTCCT
GGCGTTCGTGGTGACGCGGCGTCATAGAGTGGCCGGTGGGCGCGGCGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGC
ATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCCAGGGCCATCCCCATCTAATCCCAAGCTCATCCTAATCT
AATCCCTCCCTTCCTGTGTGTATGT----TGTAACCTGCTGC----------GTT-TGTGCATGATTGATGAAGAAGATT
TCAATAAAATGGGTG--TTGTTTTGTGTTTGTCTTGTAATCTAAGGCGTTTGCAGTGTCTAT--GCTTTGTGAGGA----
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>chr5A_998
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-----------------------------------------------------------------------GCCATGGCG
TTC---CCGGCGTGCGTGCAGTGAGGGACCAGGGAGAACCCGTGCCGGTGCAAGTTCATTGGGCCCACGCTGGGGATCCT
GGCGTTCGTGATGACACGGCGTCATAGAGTGGCCGGTGGGCGCGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGC
ATCATGGGCCACCCCTCCAGGGTCGTCTACCCGTGCGTCTCCACGGCCATCCCCATCTAATCCTATTCTCATCCTAATCT
AATCCCTTCC--------TGTATGC----TGTAACCTGGTCGGTCTGCCTGAGTT-TGTGCATGATTGATGAAGAAGATT
TCAATAAAATGGGTGTTTTTTTGTGTGTTTGTCTTGTAATCTAAGGTGTTTGCGGTGTCTATATGCTTTGTGAGGAGTTT
GCTATAAATTTGATTAGTAGGAGTAGATTACTGGGTTAACT-GACTGATCGGGCCAAATACGAGTTTGAGATACAGAGGT
TCATATAGCAGAGGCCCGCGCACCAGAGGCTTTCTCGTCAATATTA----------------------------------
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>SNPs
SS-----S------------------------------------------------------------------------
-----------------------------------------------------S----------SSS-------------
--------------------------------------------S-----------------------------------
---------------------------------S----S-----------------------------------------
----------------------S---------S-----------------------------------------------
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-----------------------------------------S------------------S---------SSS-------
--------S-------------------------------------S---------------------------------
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-------------S------------------------------------------------------------------
-----------------------------S--------------------------------------------------
----------------------------------------------------------S---------------------
-----------S---------------------------------------------------------S------S---
-----------------------------------------------S--------------------------------
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----------------------------------------------------------------S---------------
--------S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
-----------------------------------------------S------------------------S-----S-
------S------S---S-S--------------------------------S-----------------------S---
-------------S------------S-S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS-----------------S---S---------S-------------------------------------------
----------S------S-------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------------------------------------------------
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---S----S--S-------------S-----S------------------------------------------------
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-----------------------------------------------------------------------------S--
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_145
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---------------------------------------------CGCGAGTTCTGTACCAAGGT---------------
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>reverse_1657
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--------------------------------------------------------GCCTTTGCATCATAGGGCAA----
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