>input_sequence_86620
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATGAACGGGAGTAGCAGGA
GCAAGG---------AGGGAGGCGAGAAGCATTTCCTT---GAAGATTCTAGGGTACTGGTGAAGCAAGTGAGGGAGCTG
AGGAGGCTGGTGCCCTGCTGCCGCGAGCCGTGCGGGCTCGGCGAGCTGTTCCAGGATGCGGCGACCCACATCGAGGATTT
GCAGGTGCAGGTGAAGGTCATGAGGATGCTGCTCGACAAGCTCTCCGACGAGTGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>chr4D_1_TraesCS4D01G182400
TGGGTTACATACGGAGCAAAATGAATGAATCTAAATTTAAAATGTATCTATATACATCCGTATCCGTATGTGATTCATAG
TGGAATCTCTACAAAGACTTACATTTAGGAACGGAGGGAGTATATCCTACTTAACGTCGGTGATTGGGAGTCTATGAAAA
GTTTTCCTA----ACGTGCCCAAAAAATATAGATTGCTCGATCGGCGCAAGCAAGGAACAGAGTTGGAGTCGTGTCGAGG
GAATAATCCAGGGTGTTGTAGTGATAAACGGGCATGGAAGCTGCGCGATTAGTTGACACTACGCACGCATTCATTCGCAG
GCATAGCTGGTGTTCAGTTTGTTGGGCGGCATCATGTGGGTGCATGTGCTCGGTGCAACCACAAACAAAATAAGCTAGCG
AGCTACCTATAGCCACAAGCCTACACCCATGCACGCATGCTCTATCTACTCACTGATCTCTCTTCTCTCTGAAAAAGAAA
A----CCATGTGTGCA-ACAATAGATGGCGCCTACCATATGCATA------TGCATACGATACGAACATCTGCCGACCAC
ACAGCGCATGCAAGCTAAGCTCCCCGTCAA-GCCAGCCGGCGAGCGCGCTCCGCGCCGCAAACCCGCAATAGAGAACCTG
GCGCGCTGCGGTGACGTAGCGGCCGTGTCTCGCCAACCGCAGGAACGGTGCCATTAGAATACGCCGCGCCCC----TATC
TTTCTGTAGGTGGTTCGTGGCGACGCTTCGGACATTCGCATATGGGGGAGTGCCGGCGCATGAACACACACATGATTGCT
TCGCGTATCGGCAGGCGCATGTTCTCCCCGATACATCCCTATCAAAGCATAGTGCAGAAACAACAAAGATTGCGGCTATA
TATGCGTGCACTCATTGCCCTGCGCGAATGATGCATGCGAGCTTCCTTCGAAGACTAATCTTCTCTTCTTCGGCCTCTTT
TTCCTCCTTGCTGTGGTCGACGGACGACCGGAGGAGGGATT-GAGCTGGGCCGAGAAGAGGATGAACGGGAGTAGCAGGA
GCAAGG---------AGGGAGGCGAGAAGCATTTCCTT---GAAGATTCTAGGGTACTGGTGAAGCAAGTGAGGGAGCTG
AGGAGGCTGGTGCCCTGCTGCCGCGAGCCGTGCGGGCTCGGCGAGCTGTTCCAGGATGCGGCGACCCACATCGAGGATTT
GCAGGTGCAGGTGAAGGTCATGAGGATGCTGCTCGACAAGCTCTCCGACGAGTGATCCAGTGATCCATGCGCGTGCAAAC
AATGGCAAATTTGTGGACGCTGTGTCGATGCATGAATGGATCCACAGCGACAAACATACTATTTATTTATAATCCCATTC
ATTTTTTTGAATTATTATTAT---TACTTATTTAGTTCTCCTTTACGTTCGATAGGGCAAATTTTATTATTATGCTCTTC
GATTCATC--TATGCTATCAGGGTGTGTGTACCTGCGTTGCGATTTCCAGTGAGTTGAAATGAATAAATTTGCACTTTGC
TTCAATCTAGGCTGGCTACTTGTACGGTTGTACCGCACAGAGCTTGTTTTGTTGTCTATGTCAGTTATGCAATGACGGCC
CAATTATTTTGGTGACTTCAATTACAGGGGTTCAAACGACGCGAGTGTTGTATCATCGTTGCATCGCGGCACTGTTAGCC
ACTGCGCTGACTTCGAGTTCCGGTAAAATTCATCGGGCGAGGTCTACTAGAAGGAACAGAGCCGGCTTTTACACAATTTT
TTTATTTTTTTTTCTTCGGTTTTTGTATCTTTCCTGGTTTTCAATACTTTTTTTTTCT-TTCCTTTCTCCATTTCTTCTG
TTTTATTCGGTTTCCTTCGGTTTCT--------------TTTTCTTTTTTCTTCTCCTTTTTTCACTAC-TTTTGCATTT
GTTTCTTCTGTCTTATTTTTCATTTTCATTTTTCTTTGGTTTATTTAGTTTAA--TTTTATTTTATTGTTTTGCTTTTCT
TTCTTTCTTTCTTTTAGTTTTTATTCTACATTTTTGTATATGTCAACAACATTTTT----------------------AT
GATACAAGTATAACATTTTTTTTGTTACATATAGTCAACATTTC--CTATACAAATTTTTAAAATGCTTGATTAATATT-
TTTAAGTGCAAGATTAATATATTTTTCAATAAATGGTCAATATTTTTCCTACACACACTTTTAAACTTTTTCAAATGCTT
CATTAATATTTTT----CAAATACAAGATCAACATTTTTCATATACATGGTCAACATATTTTCTATT
>chr4B_121
--------------------------------------------------------------------------------
----------------------------------------TATATCCTACTTAACGTCGGTGATTGGGAGTCTATGAAAA
GTTTTCCTAACGTACGTGCCCCAAAAATATAGATTGCTCGATCGGTGCAAGCAAGGAACAGAGGTGGAGTCGTGTCGAGG
GAATGATCCAGGGTGTTGTAGTGATAAAAGGGCATGGAAGCTGCGCGATTAGTTGACACTACGCACGCATTCATTCGCAG
GCATAGCTGGTGTTCAGTTTGTTGGGCGGCATCATGTGGGTGCATGTGCTCGGTGCAACCACAAACAAAA-AAGCTAGCG
AGCTACCTATAGCCACAAGCCTACACCCATGCACGCATGCTCTATCTACTCACTGATCTCTCTTCTCTCTGAAAAAGAAA
AGAGGCCATGTGTGCA-ACAATAGATGGCGCCTACCATATGCATACACATATGCATACGATACGAACATCTGCCGACCAC
ACAGCGCATGCAAGCTAAGCTCCCCGTCAAAGCCAGCCGGCGAGCGCACGCCGCGCCGCAAACCCGCAATAGAGAACCTG
GCGCGCTGCGGTGACATAGCGGCAGTGTCTCGCCAACCGCAGGAACGGTGCCATTAGAATACGCCGCGCCCCTATATATC
TTTCTGTAGGTGGTTCGTGGCGACGCTTCGGACATTCGCATATGGGGGAGTGCCGGCGCATGAACACACACATGATTGCT
GCGCGTATCGGCAGGCGCATGTTCTCCCCGATACATCCCTATCAAAGCATAGCGCAGAAACAACAAAGATTGCGGCTATA
TATGCGTGCACTCATTGCCCTGCACGAACGATGCATGCGAGCTTCCGTCCAAGACTAGTCTTCTCTTCTTCGGCCTCTTT
TCCCTCCTTGCTGTGGTCGACGGACGACCGGAGGAGGGATT-GAGCTGGGCCGAGAAGAGGATGAACGGGAGTAGCAGGA
GCAAGG---------AGGCGGGCGAGAAGCGTTTCCTT---GAAGATTCTAGGGTACTGGTGAAGCAAGTGAGGGAGCTG
AGGAGGCTGGTGCCCTGCTGCCACGAGCCGTGCGGGCTCGGCGAGCTGTTCCAGGATGCGGCGAGCCACATCGAGGATTT
GCAGGTGCAGGTCAAGGTCATGAGGATGCTGCTCGACAAGCTCTCAGACGACTGATCCAGTGATCCATGCGCGTGCAAAC
AATGGCAAATTTGTGGACGCTCTGTCGATGTATGAATGGATCCACAGCGACAAACATACTATTTATTTATAATCCCATTC
ATTTGTTTGAATTATTATTATTATTACTTATTTAGTTCTCCTTTACGTTCGATAGGGCAAATTTCATTGCTATGCTCTTT
GATTCATC--TATGCTATCAGGGTGTGTGTATCTGCGTTGCGATTTCCAGTGAGTTGAAATGAATAAATTTGCACTTTGC
TTCAATCTAGGCTGGCTACTTGTACGGTTGTACCGCACAGAGCTTGTTTTGTTGTCTATATCAGTTATGCAATGAAGGCC
CAATTATTTTGTTGACTTC-ATTACAGGGGTTCAAACGACGCGAGTGCTGTATCATCGTTGCATCGCGGCACTGTTAGCC
ACTGCGCTGACTTCGAGTTCCGGTACAATTCATCAGGCGCGGTCTACTAGAAGGAATAGAGCCGGCTTTTACACAAAATT
TTTATTTC--TTTCTTCGGTTTTTGTATCTTTCCTGGTTTTCAATGCTTT---TTTCT-TTTCTTTCTCCATTTCTTCTG
TTTTATTCGGTTTAT------------------------TTTTATTTTTTCTTCTCCTTTTTTCACTCC-TTTTGCATTT
GTTTCTTCGGTTTTATTTTTCATTTTCATTTTTCTTTGGTTTATTTAATGT--------------TTTTTTTGCTTTTCT
TTCTTT-----TTTTAGTTTTTATTCTACATTTTTGTATATGTCAACAACATTTTT----------------------CT
GATACAAGTATAACATTA-TTTTGTTACAAATAGTCAACATTTTTCCTATACACATCTTTCAAATACTTGATTAATATT-
TTTAAGCGCAAGATTAATT--TTTTTTAATAAATGGTCAATATTGTTCCTACACACAC-TTTAAACTTTTTCAAATGCTT
CATTAATATTTTTTT----AAAACAAGATCAACAATTTTGAAATACATGGTCAACATTTTCTCTATT
>chr4A_128
--------------------------------------------------------------------------------
-----------------------------------------------TACTTAACGTCGGTGATTAGGAGTCTATGAAAA
GTTTTCCTA----ACGTGCCCAAAAAATATAGGTTGCTCGATCGGTGCAAGCAAGGAACAGAGGTGGAGTCGTGTCGAGG
GAATAATCCAGGGTGTTGTAGTGATAAAAGGGCATGGAAGCTGCGCGATTAGTTGACACTACGCACGCATTCATTCGCAG
GCATAGCTGGTGTTCAGTTTGTTGGGCGGCATCATGTGGGTGCATGTGCTCGGTGCAACCACAAACAAAATAAGCTAGCG
AGCTACCTATAGCCACAAGCCTACACCCATGCACGCATGCTCTATCTACTCACTGATCTCTCTTCTCTCTGAAAAAGATG
GCGCCTACCATATGCATACAATAGATGGCGCCTACCATATGCAG------ATGCATACGATACGAACATCTGCCGACCAC
ACAGCGCATGCAAGCTAAGCTCCCCGTCAA-GCCAGCCGGCGAGCGCGCGCCGCGCCGCAAACCCGCAATAGAGAACCTG
GCGCGCTGCGGTGACGTAGCGGCCGTGTCTCGCCAACCGCAGGAACGGTGCCATTAGAATACGCCGCGCCCC----TATC
TCTGTGTAGGTGGTTCGTGGCGACGCTTCGGACATTCGCATATGGGGGAGTGCT-GCGCATGAACACACACATGATTGCT
GCGCGTATCGGCAGGCGCATGTTCTCCCCGATACATCCCTATCAAAGCATAACGCAGAAACAACAAAGATTGCGGCTATA
TATGCGTGCACGCATTGCCCTGCGCGAACGATGCATGCGAGCTTTCGTTGAAGACTAGTCATCTCTTCTTCGGCCTCTTT
TCTCTCCTTGCTGTGGCC----GACGACCGGAGGAGGGGGTCGAGCTGGGCCGAGAAGAGGATGAACGGGAGTAGCAGGA
GCAAGGCGGTGTCGGAGGCGGGCGAGAAGCATTTGCTTGAAGAAGATTCTAGGGTACTGGTGAAGCAAGTGAGGGAGCTG
AGGAGGCTGGTGCCCTGCTGCCGCGAGCCGCGCGGGCTAGGCGAGCTGTTCCAGGATGCGGCGAGCCACATCGAGGATTT
GCAGGTGCAGGTGAAGGTCATGAGGATGCTGCTCGACAAGCTCTCCGACGAGTGATCCAGTGATCCATGCGCGTGCAAAC
AATGGCAAATTTGTGGACGCTCTGCCGATGCATGAATGGACCCACAGCAACAAACATACTATTTATTTATAATCCCATTC
ATTGGTTTGA---ATTATTATTATTACTTATTTAGTTATCCTTCACGTTCGATAGGGCAGATTTTCTTGTTATGCTCTTT
GATTCATCTATATGCTATCAGGGTGTGTGTATCTTCGTTGCGATTTCCAGTGAGTTGAAATGAATAAATTTGCACTTTGC
TTCAATCTAGGCTGGCTACTTGTACGGTTGTACCGCACAGAGCTTGTTTTGTTGTCTATATCAGTTATGCAATGAAGGCC
CGATTATTTTGGTGACTTCAATTATAGGGGTTCAAACGACACGAGTGATGTATCATCGTTGCATCGCGTCACTGTTAGCC
ACTACGCTGACTTCGAGTTCCGGTACAATTCATCGGGCGCGGCCTACTAGAAGGAAGAGAGCCGGCTTTTACACATTTCT
TTAAAAAAAACC---TCGGTTTTTGTATCTTTCTTGGTTTTCAATGCTTT---TTTCCCTTTCTTTCTCCATTTCTTCTG
TTTTATTCGGTTTCCGTCGGTTTCTTTTTCTTTTGTTTCTTTTCTTTTTTCTTCTCCTTTTTCCCATTCTTTTTGCATTT
GTTTCTTCGGTTTTATTTTTCATTTTCATATTTCTTTGGTTTATTTAGTTTCTTTTTCTATTTTATTTTTTTGCTTTTCT
ATGTGTC----TTTTGGTTTTCATTCTACATTATTGTATATGTCAACAACATTTTTTGAATACACGTTTAACATTTTTCT
GATACAAATATAACATTTTTATTAC-----ATAGTCAACATTTTTTCTATACACATTTTTTAAATGCTTGACTAACATTG
TTTAAGCGCAAGATTAATA--TATTTTAATAAATGGTCAACATTTTTCCTATACACACTTTAAAAAA-TTTCAAATGCTT
CATTAATATATTTTTTTCAAATACAAGACCAACATTTTTCTAATACATGATCAACATTTTTTCTATT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
---------------------------------------------S-----------------S----------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S---------------------------------------------------S---------------------------
----------------------------S-----------------S----------S----------------------
-S------------------------------------------------------------------------------
------------------SS------------------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----S---------------------------------------------------------------S----------S
-------------------------------S------------------------------------------------
-----------------------------------------------------------S---------------S----
-----------------------------------------------S--------------------------------
-------------------------S-------------S----------------S-----------------------
-------SSS-----------------------------------S----SSS--------S------------------
---------------S---------------------------------------------------S------------
--------S--S---------------------------------------SS----S---------S------------
-------SSSS-------------------------------------------------------------------S-
-----------------------------S-------------S---------S------S-------------------
------S------------SS-----S-----------------------------------------------------
-----------------------------------------S---------------S---------
>forward_927
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATGATGCATGCGAGCTTCCT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>reverse_1908
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ACTTTTGCATTTG
TTTCTTCTGTCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
