>input_sequence_86612
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-------------------------------------------ATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGA
AGGTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCC
GAGAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTTGGCGACTACGAGATCCACGACGGCAT
GGGCCTCGAGCTCTACTACAACTAG-------------------------------------------------------
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>chr4B_1_TraesCS4B01G133400
GGGACGAAGAGCTGGGCAGGTCGCTCCGCACGGCGGCGGCCGACGAGCAGGTGCTGAAGCGGGTGGCGGTGCTGAATGGA
TGGGAGCAGGTGGCGTATTGGAGGACGGGGTCACTGTTTTTTCTTTTCTTTTTGGACCGACCTGCCTAAACTGGAGCTCG
GACTGGCCGCACCCATGGCAGTTTGCCATGGCTGCCGGCACCGCTCGCCGGACCACCGAGGTAGGAGACGCGCGAGTGGA
CAACTAGGTGAGACGTGGCCGCGCGTGAGCAGTGCATCGGGAGGAGCAGGTGGTCTGCGGCGCGGCGAGGGGAGCTCGGG
GCAATGGAGGACGATGAGGGGAGGGGGATGAAGAGGGGCGGGCCTGAGCAGGCAACGGAGACATTGACGGTGCTCGGGGC
GGAGTAGCACCCGGCGGCGAGCGGCCATGCGGCCTGAAATTGGGGATCGTGGGTGGCCGGTTGGGATAGGCGATGGCATC
TGAAGAACAGGAAAACGAAGCGGCACGCTAATTTACGGATAACGGTGACCAGGATTGCGGGTTTATTTCCATAAAACTCA
AAGGGGTTTCTGTAAATTTGTTAACGGTGAATCCGGAGACCCAATCCATGCTTTATTATTAGGATAAGATTAGGATTAGG
AAGAGATATGTCACCATTGTACATTGCCCTAATGTGCCATGTGAAGGAAGGAAACAAATTGTTCTGAACGCTTTTCGCCG
GTCGATAGTAGTAATATAATCGGACGGTTTTATCAAAGAAGGCTGCAGGGCGTCAGCGGTGACGTGTGCTGATCAGGACG
CCGAGACCAGGTGGCGTACGGCTGCGTGGAATCTACGCCGTCTATTTCCCTCTGGACGAACAGAAAAGACAAGGACGGCT
CCCTCCTGCGACCAA---ACCACCGCCCCCGATTCTCAATTGAAAAGCACAAGGGCGCTGCAGCTCTCGCCGGGGCTAGG
GTTTGGTCGGTCGATCGATCAATCGACGCGAGCGGGAGGGAAGATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGA
AGGTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCC
GAGAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTTGGCGACTACGAGATCCACGACGGCAT
GGGCCTCGAGCTCTACTACAACTAGCCTCATCACCCCGGCCATGTATATTATTATTCCCGTCGCCTTTGACACATGATTC
CTTTTTATT---------------------TCTATGTGAACATGGTTCTCCTTCTGTTGTCGGGATGAGAATCTCAAATT
AAGCGTCTATTAG---CGCTATGCCAAACATGAAGACGCCTGTTTTCTGTTCAATTTTCAGTTTGTATGCAAAGTCAGAA
TTCTTGAACCATGGTCATATGTTGACCTGAAGTGCAATGAACTAGAAATTGTGGGTTTCTGTTTTGCCGTGAG-------
--------------------------------------------TTATAGTTTTCAGATGGTGGTGCTAGATTGGTCGAT
TTAGTTGATGAGGTTTATCCCCTTGTTGATTCTTGTAGTGTTAGCAAAAACACCAGGGATTGCTTAGGAGAACTTTTCTT
AATGGCTTTTCTTTGCTACTTGTTCGTTGGTAGGTTCTAGCTCCTCAACAATTGGAGAACTCGATTGATTTATTAATGGA
TGGGAATATTTTACCA----------------------------------------------------------------
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-----------------------TAGCAAGATAACTTTGATTTGATTGATTA----------TGTAATCTACAGCTGTAA
CATTGGTATGATTC------------------------------------AACTAGTACTCCTTCTGTTCCTAAATATAA
GACGTTCTGGC----------------------------TATATTTGGGAACAGAGGTAGTAGAAAGTAACTAAACAGAC
GGTTTGTTTGGTCATGAAAACTGAATTTATTTGCCTATTTACCGAGTGATGCATCTGAAGGAGAATAATTAAAAAAGTTG
ACC----ATCAAATGCTTCATGCTCGAACTTGATAATTCATTTACAGCAGCACCTCCCTTGATTTTGCTGATATGGCACT
GCTCTGCTCTGTGTTTGCAAAGAACAGAATTAAAATCTTCCATGCAAGTACATGTTGAAATTATGCTCTGTTTTGCCTTT
TGTGTTTAGTCTGACGAAGACAAAGCTGATTTTGCAAATTGAATTTACATGCCTATTTCAC-----TGCCACTAATCATT
GCTCCATTGCAGTGCAGGTTTGTCACCTATCTTTGCCTGCGATGATAGCTTTGGTTGCATTCCAGTCCCA
>chr3B_1
GGGACGAAGAGCTGGGCAGGTCGCTTTGCACGGCGGCGGCCGACGAGCAGGTGCTGAAGCGGGTGGCGGTGCTGAATGGA
TGGGAGCAGGTGGCGTATTGGAGGACGGGGTCACGGTTTTTTCTTTTCTTTTTGGACCGACCTGCCTAAACTGGAGCTCG
GACTGGCCGCACCCATGGCAGTTTGCCATGGCTGCCGGCGCCGCTCGCTGAACCACCGAGGTAGGAGACGCGCGAGTGGA
CAGCTAGGTGAGACGTGGCCGCGCGTGGGCAGTGCATCGGGAGGAGCAGGTGGTCTGCGGCGCGGCGACGGGAGCTCGGG
GCAATGGAGGACGATGAGGGGAGGGGGATGAAGA-GGGCGGACCTGAGCAGGCAACGGAGACATTGACGGTGCTCGGGGC
GGAGTAGCACCCGGCGGCGAGCGGCCATGCGGCCTGAAATTGGGGATCGTGGGTGGCCGGTTGGGATAGGCGATGGCATC
TGAAGAACAGGAAAACGAAGCGGCACGCTAACTTACGGATAATGGTGACCAGGATTGCGGGTTTATTTCCATAAAACTCA
AGGGGGTTTCTGTAAATTTGTTAACGGTGAACCCGGAGACCCAATCCGTGCTTTATTATTA-------------------
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>chr3B_1
GGGGCGAAGAGCTGGGCAGGTGGCTCCGCACGGCGGCGGCCGACGAGCAGGTGCTGAAGCGGGTGGCGGTGCTGAATGGA
TGGGAGCAGGTGGCGTATTGGAGGACGGGGTCACGGTTTTTTCTTTTCTTTTTGGACCGACCTGCCTAAACTGGAGCTCG
GACTGGCCGCACCCATGGCAATTTGCCATGGCTGCCGGCGCTGCTCGCCGGACCACCGAGGTAGGAGACGCGCGAGTGGA
CAGCTAGGTGAGACGTGGCCGCGCGTGGGCAGTGCATCGGGAGGAGCAGGTGGTCTGCGGCGCGGCGAGGGGAGCTCGGG
GCAATGGACGACGATGAGGGGAGGGGGATGAAGA-GGGCGGGCCTGAGCAGGCAACGGAGACATTGACGGTGCTCGGGGC
GGAGTAGCACCCGGCGGCGAGCGGCTATGCGGCCTGAAATTTGGGATCGTGGGTGGCCGGTTGGGACAGGCGATGGCATT
TGAAGAACAGGAAAACGAAGCGGTACGCTAACTTACGGATAACGGTGATCAGGATTGCGGGTTTATTTCCATAAAACTCA
AGGGGGTTTCTGTAAATTTGTTGACGGTGAACCCGGAGACCCAATCCGTGCTTTATTATTA-------------------
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>chr2A_1
GGGCG-AAGAGCTGGGCAGGTGGCTCCGCACGACGGCGGCCGACGAGCAGGTGCTGAAGCGGGCGGTGGTGCTGAATGGA
TGGGAGCAGGTGGTGTATTGGAGGACGGGGTCACGGGTTTTTCTTTTCTTTTTGGATCAACCTTCCTAAACTGGAGCTCG
GACTGGCCGCACCCATGGCAGTTTGCCATGGCTGCCGGCGCCGCTCGCCGGACCACCGAGGTAGGAGACGCGCGAGTGGA
CAGCTAGGTGGGACGTGGCCGCGCGTGGGCAGTGCATCGGGAGGAGCAGGTGGTCTGCGGCGCGGCGAGGGGAGCTCGGG
GCATTGGAGGACGATGAAGGGAGGGGGATGAAGA-GGGCGGGCCTGAGCAGGCAACAGAGACATTGACAGTGCTCGGGGC
GGAGTAGCACCCGGCGGCGGGCGGCCATGCGGCCTGAA-TTGGGGATCATGGGTGGCTGGTGGGGATAGGCGATGGCATG
T--------GGAAAACGAGTCGGTACGTTTAC---------------ACCAGGATTGCGGGTTTATTTTCATAAAACTCA
A-GGGGTTTCTGTAAATTTGTTGACGGTGAACCCGGAGACCCAATCCGTGCTTTATTATTAGGAAGAGATTA--------
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>chr4D_670
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-----------------------------TAATGTGCCATGTGAAGGAAGGAAACAAATTGTTCTCAACGTTTTTCGCCG
GTCGATA---GTAATATAATCGGACGGTTTTATCAAAGAAGGGTGCAGGGCGTCAGCGCTGACGTGGCCTGATCAGGACG
CCGAGACCAGGTGCCGTACGGCTGCGTGGAATCTACGCCGTCTATTTCCCTCTGGACGAACAGAAAAGACAAGGACGGCT
CCCTCCTGCGACCAG---ACCACCACCCCCAATTCTCAATCGAAAAGCACAAGGCCGCTGCAGCTCTCGCCGGGGCTAGG
GTTTGGTCGATCGATCGATCAATCGACGCGAGCGGGAGCGAAGATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGA
AGGTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCC
GAGAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCAT
GGGCCTCGAGCTCTACTACAACTAGCCTC-------CGGCCATGTATGTTGTTATTCCCCTCGCCTTTG-CACATGATTC
CTTTTTATTACTACTCATAAGGGTTTGTTGTCTATGTGAATATGGTTCTCCTTCTGTTGTCCGGATGAGAATCTCAAATT
AAGCATCTATTAG---CGCTATGCCAAACATGAAGACGCCTGTTTTCTGTTCGATTTTCAGTTTGTATGCAAAGTCAGAA
TTCTTGAACCATGGTCATATGTTGACCTCAAGTGCAATGAACTAGAAATTGTGGGTTTCCGTTTTACCGTGAGTTCCTAA
TTGAAACGCTGCTTTGCTAATTGAGAATGATATGCTTGCGTGTGTTATAGTTATCAGATGGTGGTGGTAGATTGGTTGAT
TTAGTTCATGAGGTTTATCCCCTTGTTGATTCTTGTAGTGTTAGCAAAAACACCAGGGATTGCTTAGGAGAACTTTTCTT
ACTGGCTTTTGTGTGCTACTTGTTCGTTGTTAGGTTCTAGT---------------GAACTCGATTGATTTATTAATGGA
TGGGAATATTTTAACA----------------------------------------------------------------
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-----------------------TAGCAAGATAACTTTGCTGTGATTGATTATGTTAACTACTGTAATCTACAGCTGTAA
CATT----------------------------------------------------------------------------
----------------------------------------ATATTTAGGAACAGAGGTAGTAGAAAGTAACTAAACAGAC
GCTTTGTTTGGTCATGAAAGCTGAATTTATTTGCCTATTTACCGAGTGATGCATCTGAAGGAGAGTAATTTAAAAAGTTG
ACC----ATCAAATGCTTCATGCTCGAACTTGATAATTCATTTACAGT---ACCTCCCTTGGTTTTGCTGACATGGCACT
GCTTTGCTCTGTGTTTGCAAAGAAAATAACCAAAATCTTCCATGCAAGTACATGTTGAAATTATGCTCTGTTTTGCTTTC
CGTGTTTAGTCCAACGAAAACAAAGCTGATTTTGCGTATTGAATTTATATGCCTATAATTCAC---TGCAGCTAATCATC
GCTCTGTTGCAGTGCAGGTTGGTCACCTATTGTTGCCTGCGATGATAGCTTTGGTTGCATTCCAGTCCCA
>chr4A_671
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------------------------------AATGTGCCATGTGAAGGAAGGAAACAGATTGTTCTCAACGATTTTCGCCG
GTCGATA-TAGTAATATAATCGGACGGTTTTATCAAAGAAGGGTGCAGGGCGTCAGCGCTGACGTGTCCTGATCAGGACG
CCGAGACCAGGTGGCGTACGGCTGCGTGGAATCTACGCCGTCTATTTCCCTCTGGACGAACAGAAAAGACAAGGACGGCT
CCCTCCTGCGACCTGACCACCACCACCCCCAATTCTCAATCGAAAAGCACAAGGCCGCTGCAGCTCTCGCCGGGGCTAGG
GTTTCGTCGATCGATCGATCAGTCGACGCGAGCGGGAGCGAAGATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGA
AGGTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCC
GAGAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCAT
GGGCCTCGAGCTCTACTACAACTAGCCTCATCACCCCCGCCATGTATATTGTTATTCCCCTCGCCTTTG-CATATGATTC
CTTTTTATTACTACTTATAAGGGTTTGTTGTCTATGTGAACATGGTTCTCCTTCTGTTGTCGAGATGAGAATCTCAAATT
AAGCATCTATTATTATCGCTATGCCGAACATGAAGACGCCTGTTTTCTGTTTAATTTTCAGTTTGTATGCAAAGTCAGAA
TTCTTGAACCATGGCCATATGTTGTCCTGAAGTGCAATGAACTAGAAATTGTGGGTTTCCGTTTTACTGTGAGTTTCTTA
TTGAAACGCTGCTTTGCTAATTGATAATGATATGCTTGCGTGTGTTATAGTTATCAGATGGCGGTGGTAGATTAGTTGAT
TTAGTTGATGAGGTTTATCCCCTTGTTGATTCTTGTAGTGTTAGCAAAAATACCAGGGATTGCTTAGGATAACTTTTCTT
ACTGGCTTTTGTTTGCTACTTGTTCGTTGGTAGGTTCTAGCCCCTCGACAACTGGAGAACTCGATTGATTTATTAATGGA
TGGGAATATTTTAACATAGCAAGATAACTTTGGTGTGATTGATTCTGTTAACTACTGTATTCTACAGCTGTAACATTGGT
ATGATTAGTAATCTACAGCTGTAACATTGTTATGATTTAACTAGTACTCCCTCTGTTCCTAAATATTTCGATTGATTTAT
TAATGGATGGGAATATTTTAACATAGCAAGATAACTTTGGTGTGATTGATTCTGTTAACTACTGTAATCTACAGCTGTAA
CATTGGTATGATTTAACTAGTAATCTACAGCTGTAACATTGTTATGATTTAACTAGTACTCCCTCTGTTCCTAAATATTA
AGACGTTTGGGCAGTTTAAATTGAACTGCCAAAACGTCTTATATTTAGGAACAGAGGTAGTAGAAAGTAACTAAACAGAC
GGTTTGTGTGGTCATGAAAGCTGAATTTATTTGCATATAT---GAGTGATGCATCTGAAGGAGAGTAAATTGAAAAGTTG
ACCATCAATCAAATGCTTCATGCTTGAACTTGATAATTCATTTACAGT---ACCTCCCTTGGTTTTGCTGATATGGCACT
GCTCTGCTCTGTGTTTGCAAAGAAAAGAATTAAAATCTTCCATGCAAGTACATGTTGAAATTATGCTCTGTTTTGCTTTC
CGTGTTTAGTCTGACAAAGACAAAGCTGACTTTGCATATTGAATTTACATGCCTATTTCATTGCCATGCCACTAATCATC
GCGCCATTGCAGTGCAGGTTCGTCACCTATCGTTGCCTGTGATGAGCG--TTGGTTGCATTCCAGTCCCA
>SNPs
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----------------------------------S---------------------------------------------
---------------------------------------S----------------------------------------
--S------------------------S----------------------------------------------------
----------------------------------S---------------------------------------------
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-------------------------------S------------------------------------------------
-S-----------------------------S---------------S----------------SS------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S----S---------
-------S----------------------------------S---------------S--------S------------
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--------------S---------S-----S---------S-------------S-------------------------
---------S----------------------------S-----------------------------------------
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-----------------------------------------------------S--------------------------
--------------------------------------------------S--------S---------S----------
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----S---------------------------------------------------------------------------
-----------------------------------------------------------S-----S--------------
----------------------------------------------------S-------------S---------S---
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-S--------S------------------------------S----S----S----------------------------
-------------S------------------------------------------------------------------
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---------------------------------------S-S--------------------------------------
-------------S------------------------------------------------S---------------S-
SSSSS-S---S-----------------------------------S---------------------------------
-------------------S--------------------------------------------S-----S---------
-----------------------------------------------SSSS----------S------------------
------------------------S---------------------------------------------------S--S
S-----------------------------------S------------------------------------------S
--------------------S----------S--------------------------------------
>forward_115
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---------------TATTGGAGGACGGGGTCACT---------------------------------------------
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>reverse_2288
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-----------------------------------------------CAGCACCTCCCTTGATTTTGC------------
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