>input_sequence_86608
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-----------------------------------------ATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGAAG
GTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCCGA
GAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGG
GCCTCGAGCTCTACTACAACTAG---------------------------------------------------------
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>chr4A_1_TraesCS4A01G185200
AAGTGCAAGGACCGAAAACGTCGGTTGGCTCGGGTGAGGTGGGCATGAGCCAAAGGTCATTCCTTAGCCAGTGGTGGGCG
CAACAATCTGGCAAGGTTTGACTGTTGTCATACATAAAACTTGCATTGTATAGCAGATGTATATAATACTTGTGTCAAGA
TTTTTTTTTGAGAGTACGTCAATAGCGTACCATATTTTTATAGAAGGCAGAGAGTTTAATTATAAGAAGCCAACCACCAA
TGCGAACATTATAGGTCGGCACACACGCAACATCGCTAACCACTAGTCTACCCTCTCACGAAAGGATCTAACCCTCTTGC
TCCTATGCCTGCAAGCTTTCATTCTTTGATTTCGGCCATCATCATTTCAACTAACTCTGGTGGGGTTCTTTGTTGGTGGA
TTCTGTTGAAAACCCTCGCGTTTCTTTGCTTCCACAGCACCCAGGCGTTTCTTTGTTTCAAAAATGAGTTGAGTCGCATA
TGAGGGTAACCTTCGTCACACCTAAAAATTACTTCGAACAAACACCGCCCTTGGCGAGGCTCAAAGGGGGCTGTAACTCG
ATGCAAGCGCCGTCATGGCTAATGGTGGTAAGTGTCGTCTTGCAAAAGTCCATTAGAGTTACGTCATCCACACCAATGAT
AGATTTTGAGTATGAATTACGACACTACAATGTGCCATGTGAAGGAAGGAAACAGATTGTTCTCAACGATTTTCGCCGGT
CGATA-TAGTAATATAATCGGACGGTTTTATCAAAGAAGGGTGCAGGGCGTCAGCGCTGACGTGTCCTGATCAGGACGCC
GAGACCAGGTGGCGTACGGCTGCGTGGAATCTACGCCGTCTATTTCCCTCTGGACGAACAGAAAAGACAAGGACGGCTCC
CTCCTGCGACCTGACCACCACCACCCCCAATTCTCAATCGAAAAGCACAAGGCCGCTGCAGCTCTCGCCGGGGCTAGGGT
TTCGTCGATCGATCGATCAGTCGACGCGAGCGGGAGCGAAGATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGAAG
GTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCCGA
GAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGG
GCCTCGAGCTCTACTACAACTAGCCTCATCACCCCCGCCATGTATATTGTTATTCCCCTCGCCTTTG-CATATGATTCCT
TTTTATTACTACTTATAAGGGTTTGTTGTCTATGTGAACATGGTTCTCCTTCTGTTGTCGAGATGAGAATCTCAAATTAA
GCATCTATTATTATCGCTATGCCGAACATGAAGACGCCTGTTTTCTGTTTAATTTTCAGTTTGTATGCAAAGTCAGAATT
CTTGAACCATGGCCATATGTTGTCCTGAAGTGCAATGAACTAGAAATTGTGGGTTTCCGTTTTACTGTGAGTTTCTTATT
GAAACGCTGCTTTGCTAATTGATAATGATATGCTTGCGTGTGTTATAGTTATCAGATGGCGGTGGTAGATTAGTTGATTT
AGTTGATGAGGTTTATCCCCTTGTTGATTCTTGTAGTGTTAGCAAAAATACCAGGGATTGCTTAGGATAACTTTTCTTAC
TGGCTTTTGTTTGCTACTTGTTCGTTGGTAGGTTCTAGCCCCTCGACAACTGGAGAACTCGATTGATTTATTAATGGATG
GGAATATTTTAACATAGCAAGATAACTTTGGTGTGATTGATTCTGTTAACTACTGTATTCTACAGCTGTAACATTGGTAT
GATTAGTAATCTACAGCTGTAACATTGTTATGATTTAACTAGTACTCCCTCTGTTCCTAAATATTTCGATTGATTTATTA
ATGGATGGGAATATTTTAACATAGCAAGATAACTTTGGTGTGATTGATTCTGTTAACTACTGTAATCTACAGCTGTAACA
TTGGTATGATTTAACTAGTAATCTACAGCTGTAACATTGTTATGATTTAACTAGTACTCCCTCTGTTCCTAAATATTAAG
ACGTTTGGGCAGTTTAAATTGAACTGCCAAAACGTCTTATATTTAGGAACAGAGGTAGTAGAAAGTAACTAAACAGACGG
TTTGTGTGGTCATGAAAGCTGAATTTATTTGCATATAT---GAGTGATGCATCTGAAGGAGAGTAAA
>chr4D_600
TTGCGAATGACCATCG----------------------------------------------------------------
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-------------------------------------------------------GAGTTACATCATCGACACCAATGGT
AGATTTTGAGTATGAAATACGGCAGTATAATGTGCCATGTGAAGGAAGGAAACAAATTGTTCTCAACGTTTTTCGCCGGT
CGATA---GTAATATAATCGGACGGTTTTATCAAAGAAGGGTGCAGGGCGTCAGCGCTGACGTGGCCTGATCAGGACGCC
GAGACCAGGTGCCGTACGGCTGCGTGGAATCTACGCCGTCTATTTCCCTCTGGACGAACAGAAAAGACAAGGACGGCTCC
CTCCTGCGACCAG---ACCACCACCCCCAATTCTCAATCGAAAAGCACAAGGCCGCTGCAGCTCTCGCCGGGGCTAGGGT
TTGGTCGATCGATCGATCAATCGACGCGAGCGGGAGCGAAGATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGAAG
GTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCCGA
GAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTCGGCGACTACGAGATCCACGACGGCATGG
GCCTCGAGCTCTACTACAACTAGCCTC-------CGGCCATGTATGTTGTTATTCCCCTCGCCTTTG-CACATGATTCCT
TTTTATTACTACTCATAAGGGTTTGTTGTCTATGTGAATATGGTTCTCCTTCTGTTGTCCGGATGAGAATCTCAAATTAA
GCATCTATTAG---CGCTATGCCAAACATGAAGACGCCTGTTTTCTGTTCGATTTTCAGTTTGTATGCAAAGTCAGAATT
CTTGAACCATGGTCATATGTTGACCTCAAGTGCAATGAACTAGAAATTGTGGGTTTCCGTTTTACCGTGAGTTCCTAATT
GAAACGCTGCTTTGCTAATTGAGAATGATATGCTTGCGTGTGTTATAGTTATCAGATGGTGGTGGTAGATTGGTTGATTT
AGTTCATGAGGTTTATCCCCTTGTTGATTCTTGTAGTGTTAGCAAAAACACCAGGGATTGCTTAGGAGAACTTTTCTTAC
TGGCTTTTGTGTGCTACTTGTTCGTTGTTAGGTTCTAGT---------------GAACTCGATTGATTTATTAATGGATG
GGAATATTTTAACATAGCAAGATAACTTTGCTGTGATTGATTA-------------------------------------
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--------------------------------------------------TGTTAACTACTGTAATCTACAGCTGTAACA
TT------------------------------------------------------------------------------
--------------------------------------ATATTTAGGAACAGAGGTAGTAGAAAGTAACTAAACAGACGC
TTTGTTTGGTCATGAAAGCTGAATTTATTTGCCTATTTACCGAGTGATGCATCTGAAGGAGAGTAA-
>chr4B_669
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----------------------------AATGTGCCATGTGAAGGAAGGAAACAAATTGTTCTGAACGCTTTTCGCCGGT
CGATAGTAGTAATATAATCGGACGGTTTTATCAAAGAAGGCTGCAGGGCGTCAGCGGTGACGTGTGCTGATCAGGACGCC
GAGACCAGGTGGCGTACGGCTGCGTGGAATCTACGCCGTCTATTTCCCTCTGGACGAACAGAAAAGACAAGGACGGCTCC
CTCCTGCGACCAA---ACCACCGCCCCCGATTCTCAATTGAAAAGCACAAGGGCGCTGCAGCTCTCGCCGGGGCTAGGGT
TTGGTCGGTCGATCGATCAATCGACGCGAGCGGGAGGGAAGATGATCGAGGTGGTGCTCAACGACCGCCTGGGGAAGAAG
GTGCGCGTCAAGTGCAACGAGGACGACACCATCGGCGACCTCAAGAAGCTCGTGGCGGCGCAGACCGGGACCAGGGCCGA
GAAGATCCGCATCCAGAAGTGGTACACCATCTACAAGGACCACATCACCCTTGGCGACTACGAGATCCACGACGGCATGG
GCCTCGAGCTCTACTACAACTAGCCTCATCACCCCGGCCATGTATATTATTATTCCCGTCGCCTTTGACACATGATTCCT
TTTTATT---------------------TCTATGTGAACATGGTTCTCCTTCTGTTGTCGGGATGAGAATCTCAAATTAA
GCGTCTATTAG---CGCTATGCCAAACATGAAGACGCCTGTTTTCTGTTCAATTTTCAGTTTGTATGCAAAGTCAGAATT
CTTGAACCATGGTCATATGTTGACCTGAAGTGCAATGAACTAGAAATTGTGGGTTTCTGTTTTGCCGTGAG---------
------------------------------------------TTATAGTTTTCAGATGGTGGTGCTAGATTGGTCGATTT
AGTTGATGAGGTTTATCCCCTTGTTGATTCTTGTAGTGTTAGCAAAAACACCAGGGATTGCTTAGGAGAACTTTTCTTAA
TGGCTTTTCTTTGCTACTTGTTCGTTGGTAGGTTCTAGCTCCTCAACAATTGGAGAACTCGATTGATTTATTAATGGATG
GGAATATTTTACCATAGCAAGATAACTTTGATTTGATTGATTA-------------------------------------
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------------------------------------------------------------TGTAATCTACAGCTGTAACA
TTGGTATGATTC------------------------------------AACTAGTACTCCTTCTGTTCCTAAATAT-AAG
ACGTTCTGGC---------------------------TATATTTGGGAACAGAGGTAGTAGAAAGTAACTAAACAGACGG
TTTGTTTGGTCATGAAAACTGAATTTATTTGCCTATTTACCGAGTGATGCATCTGAAGGAGAATAA-
>SNPs
SS-S-S-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----S---------S-
----------------S----S--S--S--------------------------S-------------S-----------
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-----------S-SSS----------------------------------------------------------------
--S----------------S------------------------------------------------------------
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-----------------------------------S----------------------------------S---------
-------------S----------------------------------------------S-------------------
----------SSSS---------S-------------------------S------------------------------
------------S---------S------------------------------------------S-------S--S---
----------------------S------------------------------------S-----------S--------
------------------------------------------------S------------------S------------
---------------------------------------S----S----S------------------------------
------------------------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S---------------S---
-----SS---SSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
-----S--------------------------S---S-----------------------------S
>forward_436
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----------------CGCGTTTCTTTGCTTCCACA--------------------------------------------
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>reverse_1720
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---------------------------------------CCCTCGACAACTGGAGAACT---------------------
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