>input_sequence_86582
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----------------ATGGGCATGGGCGGAGCGGTGAAGATGATCGTCGGAGCGAAGGAGGAGCGGGTGCTGGGCACGT
CCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACCGACGTGGAGAGCGAGCGGCGCATCCTCTGT
CTCCCGCTGTGCGTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAGCTAG--
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>chr2A_1_TraesCS2A01G432300
TGTATCTAGGAAGGACAGTGGAAACTTTACATGATTAAACCGTGGAGGCTATTTCGAGGAAAAAAAGAGGAAGTTTAATG
GAGACTGCTGGGTTTTCTCTATAATGGATCTAGAGTTACAATGAAGCGGGCTATACTAAACTAAAAAAGAATTCTTATCG
CCAAAAAGAACTAAAAGAGAATTCGGCATGAAGTACTTGGCACCACATGGAGAGGAGTAGTTTATAGATGGTGAGTTGTT
TCTGGGAAGAGTCAGCTGGCCGATTCTTTTGGCAAAACGGTCAATGTTAATATGTCTCTCGCAAAGAAAAAAAAACGGAT
ATAGACATGAAATAATTTTCAAACTATATAAATTTGGCACACGCATATTTTCTCCATTTCCAATTATTGTTTGTTGGCAA
CATATACAAATAACTTGCTGGGGCATGGTGTATCGAGACACGCGAGAGAGCAACTATATCTAAACTATCACCCGCAAAAA
AAAAAC------TATATCCAAACTAAGATGTCTTCAACCATAGGCCTTATCCCGTTCAGTGTCAATCCAAAAGACGAAAA
CTTATCTTATCATGGATGCATACGAATGCAAGATGGGCACACGCATGCATAAACTTCAATGTTTATTAGTCT--TTTTTT
TCTTTTGAGGGGGTTCCTCTCAAAACGAATGTTTTTTTTTG---------------GTAGTAGTATGCTTTTTT-AAAGG
GTGTACACTAGCGCCACTAACTGAAAAAAAAAT-------------ACTGTAGCGTGTACTCCTCCAGCGTAGGATAGAG
GAGGGCTGGAGAGCCGCACATGGGCCTCCCGTGGGTCGTATATCCATCGAGACGTAGGTGA-------------------
------------GCCGCGCGCGCAGGCGCA-----GCGGTCCTGCCCCTGCTTCCCGCCTGCGCCCTCGCCCCCTCCGCT
ATATAT--------GCCT-C----------CCCCGCACCGGCCACA-AAATCCCCCAGGCTTTTC-AAACCCAAA-----
-CCACCAACTCC-------CCCCTCT-----TCTTCCTCCTCTCGTTTCGTTTCTTGCGGC----------------C--
--G----AGGACAGCAATGGGCATGGGCGGAGCGGTGAAGATGATCGTCGGAGCGAAGGAGGAGCGGGTGCTGGGCACGT
CCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGCCCCGTGGTGGCCACCGACGTGGAGAGCGAGCGGCGCATCCTCTGT
CTCCCGCTGTGCGTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAGCTAGCT
CAACCTCAAGCCTCTGCTCCT--------GCCGATCCATCCATCGATCCACTAGCGTGCGGAGTTGAACAATCC-CGAGT
TCTTTGGTTCTTGTT----------------GGCCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTCATC
TAATTTCCAG---------TGGCCATATCTAGCTAATCTGGTG---------------AAGCGCTGCAAAACTGGCACTC
TGCTGTGTCTTGCAGCAACCTCTCTGTCAATGGTGGCGGGGT--------------------------------------
-------------TCCTCCTTCTTGATTAAGTTTTTT--------------------------TGAGTAATCCTTCTTGA
TTAAGTTTTTTTTGAGATATTCCTTCTTGGTTAAGTAGATAGTG-----TAATTAACGCACGGCTGGGACCGACCATCAT
GGTGTGCGA----TAAAATGCAGTCCGGGCCCACT-CCCAGTGACTAGCGT----------TTCTCAAAAGAAAAAAGAA
GTACATTGACTCGCCTCGATCGATCCCGCAAGGCTGTTCAACCTGAGTTGTTTTCTTTCC-TTTTTTGCGAAGGTTACAG
TAACCTGTACTACTGATAA--------ACAGTATAGCAGTAGCAGCTACAGAATCTCCGTCGCTGCGTGTACTACAGCGG
TAGCTGCCACAGATCGATGGTGCCGCCCACAGCCACAGGTTTTGGCTGGCATGCCACCAGCTCATGCAATGCTCCCACAA
GCCACGGCAAGCAGAAGCAGCCGGCCGGCGCGCGGCCCGT--CTA----TTGGTTACCTGTTCCTTTCGCGGGCAATCAC
GTACGTGCCGCCTTGGT--------------------------------ACACTAGCCAGACGGCCGGCCGTCCAATCTG
AACGCGCAAACGAGCCAGACCCTTCTGTTCAATGT----------------------------------CCATTAGTTGC
CAAAAAGGAAGATTG---------GTACTGATCTCTAGATTGTTTCGAGTCCCCGCCCGGCAGCAAGATGCGTTCAGGAA
TGAACTGTAGGATTATACTTCAAAAGAGGAAGGTTAATTACTTAATTTGTGCGTGCAAGCCATGCGCGCCGCATTTATTC
GGTGCCTAATCAGGGATCACAGCACATGGAAAACACGA
>chr2D_413
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------------ACTTGCTGGGGCATGGTGTATCGAGAGATACGGGAGAACAACTATATCTACACTATCACCCACAAAAG
AAAAATAAACTATATATCTAAACTAAGATGTCTTCAACCGTAGGCCTTATCCCGTTCAGTGTCAATCCAAAAGACCAAAA
CTTATCTTATCATGGATGCGTACAAAAGCAAGATGGGCACAAGCATGCATAAACTTCAATGTTTATTAGTAGTCTTTTTT
TCTTTTGAGTGGTTCCCCGCAATAAATGGTTTATTAGTCAACAAATAAATACACATGTAGTAGTATGATTTTTTTAAAGG
ATGTACACTAGTGCCCCTAGGGAAGAAAAAAAATCAAAGGCCTGCCACTGTAGCGTGTATTCTTCCACTAGAGAGCG---
---------------GCACATGGGCCTCCCGTGGGTCGTATATCCATCGAGACGTACGCGAGCCCGTAAAAGTAAAACGC
AAACGGGTAGCTGCCGCGCGCGCAGGCGCA-----GCGGTCCTACCCCTGCCTCCCGCCTGCGCCCTCGTCCCCTCCGCT
ATATAT--------GCCTTC----------CCCGGCACCGGCCACA-AAAATCCCCAGACTTTTC-AAAGCCAAA-----
-CCACCAACTCA-------CCCCTCT-----TCTTCCTCCTCTCGT----------GCGACCGAGGGGATCGTCGATC--
--G----ATGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCGTCGGAGCGAAGGAGGAGCGGGTGGTGGCCACGG
GCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCAGCCCCGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATCCTCTGC
CTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGCCTACAGCTAGCC
GATTC-CAAGCGTCTACTCCT--------ACCCATCAATCCATCGATCAACTAGCGTGCGGAGTCGAACAATCCCCGAGT
TATTTGGTTCTTT---GTTGGCCGTGGTTACGGTCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTGATC
TAATTTCCAG---------TAGCCATATCTAGCTAATCTGGTGGGCGTGCATCACGTCGATCGCTGCAAAACTGGCACTC
TGCTGTGTCTTGCAGCAACCTCCCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTAA-TGGAAATTT
CGTACGCGCCAGCTCCTCCTTCTTGATTAAGTTTTTT--------------------------TGAGTAATCCTTCTTGA
TTAAGTA------------------------------AGATGGTGT-----ATTAACGCACGGCTGGGACCGACCATCAT
GGTGAGCGA----TAAAATGCAGTCCCGGCCCACTGCCCAGTGACTAGCGTACCCCTCTGG-TCTCAGA--AAAAAGAGA
GTACATTGACTCGTCTCGATCGATCCCACAAGGCTGTCCAACCTGCGCTATTTTCTTTCC-TTTTTTGCGAAGGTTACAG
TAGCCTGTACT---GA--------TAAACAGCA------TAGCAGCCACAGAATCTCCGTCGCTGCATGTATTACAG---
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>chr2D_777
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-------------CCGCACATGGGCCTCCCGTGGGTCGTATATCCATCGAGACGTAAGCCAGTCGGTGAAAGTAAAACCC
AAACGCGCGCAGGTCGTATA-------------------TCCTGCCCCTGCTTCCCGCCTGTGCCCTCGCCCCCTCCGCT
ATATAT--------GGGGCTGCCATGCCATCCCGGTACCGGCCACA-AAAATCCCCAGACTTTTG-AAGGCCAAA-----
-CCACCAACTCC-------CCCCTTT-----TCTTCCTCCTCTCGT----------GCGACCGAGGGGATCGTCGATCGA
TCG----ATGGCGACAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGGGCACGG
GCAAGGCGCCCGGCGCGTGCCCGTCCTGCGGCGGCCCGGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATCCTCTGC
CTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGACTCGTCACCGTCTACGGCTAGAA
GAATC-CAAGCCTCCGCTCCT--------ATCAATCGATCCATCCATCAACTAGCGTGCGCAGTAGAACAATCCCCGAGT
TCTTTGGTTCTTGTTAGTTGGCCGTGGTTACGGTCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTCGTC
TAATTTCCAG---------TAGCCATATCTAGCTAATCTGGTGGGCGTGCATCATGTGAAGGGCTGCAAAACTCC-----
------------CAGCAACCTCTCTGTCAATGATGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTAAATGGAAATCT
TGAACGCGCCAGCTCCTCCTTCCTGATTAAGTTTTTT--------------------------TGAGTAATCCTTCTTGA
TTAAGTATTTTTTGAGATAATCCTTCTAGATTAAGTAAGATGGTGTAATTAATTAACGCACGGCTGGGACCGACCATCAT
GGCGATCGAGTGATAAAATGCAGTCCCGGCCCACTGCCCAGTGACTAGCGTACCCATCTGTTTCTCA-A--AAAAAAAGA
GTACATTGACTCGTCTCGATCGATCCCGCAAGGCTGTTCAACCTGAGCTGTTTTCTTTCCTTTTCTGGCGAAGGTTACAG
TAACCTGTACT---GA--------TAAGCAGTA------TAGCAGCCACAGAATCTCCGTCGCTGCGTGTACTACAGCGG
TAGCTGCCACAAATCGATGGTGACGCCCACAG------GTTTTGGCCGGCACT---------------------------
----------GCAGAAGCAGCCGGCCGGCGCGCGGCCCGT--CCGTCCGTTGGTTAACTGTTCCTTTCGCGGGCAATCAC
GTACTACGTGGTACGAGTAAAATCCCCGCGATTCGATCTGCACGGTTGCACACTAGCCGGCCGGCCGGCCGTCCAATCTG
AACGCGCAAGCGATCCAGACCCTTCTGTTCAGTGTTCACTTTGTAACCGGAGTCTGTCATGACAATTCATCATCAGTTGC
CAAAG---------------------------------------------------------------------------
-------------------------GGGGAAGG--------TTAATTTGTGCATGCAAGCCATGCGCGCCGCATTTATTT
GGTGCCTAATCAGGGATCACAGCACATGGAAAACACGA
>chr2B_778
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--------------CGCACATGGGCCTCCCGTGGGTCGTATATCCATCGAGACGTACGCGAGTCGGTAAAAGCAAAACCC
AAACGGGTCGCTGCCGCGCGCGGTCCTGC---------------CCCCTGCTTCCCGCCTGGGCCCTCGTCCCCTCCGCT
ATATAT--------GCCTTC----------CCCGTCACCGGCCACA-AAAATCCCCAGACTTTTCGAAAGCCAAG-----
-ATCCCACCTCC-------CTCCAATCTCTATCTTCTTGCTCTCGC----------GCGGCCGAGGGTATCGTCCATC--
--G----ATGGCAGCAATGGACGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGGGCACGG
GCAAGGCTCCCGGCGTTTGCCCGTCTTGCGGCGGCCCCGTGGTGGCCACCGACGTGGAGAGCGAGCGGCGCATCCTGTGC
CTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACACCTAGCC
GAATC-CAAGCCTCTACTCCTACCGA----TCCATCCAACCATCGATCAACTAGCGTGCGGCGTCGAACAATCCCCGAGT
TCTTTGGTTC---TTAGTTGGCCGTGGTTACGGTCCTAAAGTAGCTTGCTAGCTAGCCTGGCTAATGTAATTCATTCATC
TAATTTCCAG---------TAGCCATACCTAGCTAATCTGGTGGGCGTG---------AAGGGCTGCAAAACTGGCACTC
TGCTGTTTCTTGCAGCAACCTCTCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTAA-TGGAAATTT
GGAACGCGCCAGCTCCTCCTTCTTGATTAAGTTTTTTGAGTAACCCTTCTTGATTAAGTTTTTTGAGTAATCCTTCTTAA
TTAAGT-TT-TTTGAGATAATCCTTCTTCATTAAGTAAGATGGTGTAATTGATTAATGCACGGCTGGGACAGAACATCAT
GGTGATCGA----TAAAATGCAGTTCCAGCCCACTCCCCAGTGACTAGCGTACCCGTCTGTCACT---------AAAAAA
GTACATTGACTCGTCTCGATCAATCTC-----GCTGTTCAACCTGAGCTGTTTTCTTTCCTTTTTTTGCGAAGGTTACAG
TAATCTGTACT---GATAAGCACTTAAGCAGTA------TAGCAGCCACAGAATCTCCGTCGCTGCATGTACTACAGTGG
TAGCTGCCACAGATCGATGGTGACGGC-------------------TGCCACC---------------------------
----------GCAGAAGCAGCCGGCCGGCGCGCGGCCCGT--CCGTCCGTTGGTTAACTGTTCCTTTCGCGGGCAAT---
-----ACGTCGTACGAGTAAAATCCCCGCGATTCGAACTGCACGGCTGCACACTA--------GCCGGCCGTCCAATCTG
AACGCGCAAACGAGCCAGACCCT---------------------------------------------------------
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>chr2A_825
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------------GCCGCGCGCGCAGGCGCA-----ACGGTCCTGCCACTGCTTGCCGCCTGCGCCCTCGTCCCGTCCGCT
ATATATACGGGCCTGCCATC----------CCCGTCACCGGCCACA-ACAATCCCCAGACTTTTC-AAATCCAAA-----
-CCACCAACTCC-------CCCCTCT-----TCTTCCTCCTCTCGT----------GCGATCGAGGGGATCGTCGATC--
--G----ATGGCGACAATGGGTGTGGGCGGAGCGGTGAAGATGATCGTCGGGGCGAAGGTGGAGCGGGTGGTGGGCACGG
GCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGTCCCGTGGTGGCGACGGACGTGGAGAGCGAGCGGCGCATCCTGTGC
CTCCCGCTGTGCCTCAAGAACAAGCGCAAGTACTCCTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAGCTAGCC
GAATC-CAAGCCTATACTCCTACCGG----TCCATCCATCCATCGATCAACTAGCGTGCGGAGGCGAACAATCCCCGAGT
TCTTTGGTTC---TTGTT-------------GGCCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATTCATTCATC
TAATTTCCAGACTTTCCAGTAGCCATATCTAGCTAATCTGGTG---------------AGGCGCTGCAAAACTGGCACTC
TGCTGTGTCTTGCAGCAACCTCTCTGTCAATGGTGGCGGGGCACCTCCGCGTTAATGCGCAGGCCAGTAA-TGGAAAATT
TCAAACGCCTCTCGTCCG---------------------------------------------------------CTCGA
TTAAGAATTTA-------------------------AGATGGTG-----CAATTAACGCACGGCTGGGACC----ATGAT
GCTGTGCGG----TAAAATGCAGTCCCGGCCCACTGCCCAGTGACTAGCGTAACCCTCTGATTCTCAAAA----AAGGAA
GTACATTGACTCCTCTCGATCGATCCCGCAAGGCAA--CAACGTGAGCTG-TTTCTTTCC-TTTTTTGCGAAGGTTACAG
TAACCTGTACTACTGATAA--------ACAGTGT---AGTAGCAGGCACAGAATCTCCGTCGCCGCATGTACTACAGTGG
TAGCTGCCACGGATCGATGGTGACGCCCACAGCCA----------------------CAGCTCATGCAATGCTCCCACAA
GCCACGGCAGGCAGAAGCAGCCGGCCGGCGCGCGGGCACGGCCCTTCCGTTGGTTACCTGTTGCTTTCGCGGGCAATCAC
GTA-----------------------------------------------------------------------------
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>chr2D_827
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-----CGCGCAGGCGCAGCGGACAGCGGTCCGCGCACGGTCCTGCC-----------CCTGCGCCCTCGTCCCCTCCGCT
ATATAT--------GCCATC----------CCCGGCACCGGCCACTCAAAATCCCCAGACTTTCC-AAGCCCAAAATCAA
AATCCCACCTCTCTCCGATCCCCCCT-----TCTTCCTCCTCTCGTTTCGTTTCTTGCGGCCGAGGGGATCGTCGATC--
--GATCCATGGCAACAATGGGCGTGGGCGGAGCGGTGAAGATGATCATCGGGGCGAAGGAGGAGCGGGTGGTGGCCACGG
GCAAGGCGCCCGGCGCTTGCCCGTCCTGCGGCGGCCCCGTGGTGGCGACCGACGTGGAGAGCGAGCGGCGCATCCTCTGC
CTCCCGCTGTGCCTCAAGAGCAAGCGCAAGTACTACTGCACCAGGTGCTTCCGCCGCCTCGTCACCGTCTACAGCTAGTA
GCTCATCAAGCCTCTCCTCATGCCGATCCATCCATCCATCCATCGATCAACTAGCGTGCGG----------------AGT
TCTTTGGTTC---TTAGTTGGCCGTGGTTACGGCCCTAGAGTAGCTT----GCTAGCCTGGCTAATGTAATGTAATGGTG
ATTCTGAGTTAATTCTTCT-----ATATCTAGCTTATTTGGTGGGCGTGCATCCCGTGAAGGGCTGCAAAACTGGCACTC
TGCTGTGTCTTGCAGCAACCTC-----------TGGCGGTGCACCTCCGCGTTAATGCGCAGGCCAGTAA-TGGAAACCT
GGAACGCGCCAGCTCCTCCTTCCTGATTAAGTTTTTT------------------------TTTGAGTAATCCTTCTTGA
TTAAGT-TTTTTTGAGATATTCCTTCTTGGTTAAGTAGATGGTG-----TAATTAACGCACGGCTGGGACCGACCATCAT
GGTGAGTGA----TAAAATGCAGTCCGGGCCCACTGCCCAGAGACTAGCGTACCCGTCTGTTTCTCAAA--AAAAATAGA
GTACATTGACTCGTCCCGATCGATCCCCCAAGG-------ACCTGCGCTGTTTTCTTTCC-TTTTTTGCGAAGGTTACAG
TAGCCTGTACT---GATAA--------ACAGCA------TAGCAGCCATAGAATCTCCGTCGCTGCATGTACTACAGTGG
CAGCTGCCACAGATCGATGGTGACGCCCACAG------GTTTTGGTTGCCACT---------------------------
----------GCAGAAGCAGCCGGCCGGCGCGCGGCCCGT--CCGTCCGTTCGTTAACTGTTCCTTTCGCGGGCAATCAC
GTACTA-------------AAATCCCCGCGATTCGATATGCACGGCTGCACACTA--------GCCGGCCGTCCAATCGG
AACGCGCAAACGAGCCAGACCCTTCTGTTCAATGT----------------------------------TCATTAGTTGC
CAAAAAGGAATATTTGTAGTACTCGTAGTGATCTCTGGATTGTTTCGAGTCCCCGCCCGGCACC----------------
--AATTGTAGGATTATACTCCAAAAGGGGAAGG--------TTAATTTGTGTGTGCATGCCATGCGCGCCTCATTTATTT
GGTGCCTAATCAGGGATCACAGCACATGGAAAACACGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS--------------------------S-SS--S----S------------S----------S-----S
-----S------------S--------------------S-----------------------------------S----
-------------------S---S--S--------------S----------------------------SS--------
---------S--S-S--SSSS-S--SSSS-S-S--SS-SSS--------------------------S------------
S----------S---S---SSSS-S-------S--------------------------S--S----SSSS--SSSSSSS
SSSSSSSSSSSSS-------------------------------------------S-S---------------------
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---------------------------------S----------------SS------S---------------------
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--------S-S-----------S-----------------------------------------------S--------S
S------------------------------------------------------------------------------S
------------S------------------------------------------------------------------S
S----------------------------S--S---------------S---------------S---------------
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--------------------S-----------------------------------------------------------
-----------------------------------------S--------------------------------------
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------S---------------------------------S---------------------------------------
----------------------------------------------------------------------S---------
-------------S---------------------------------S--------------------------------
----------------------------------SSS---------S---------------------------------
----------------------S------------SSS-------------SSSSSS-----------------------
---------S---------------------------------SS-----------------------------------
----SSSSS-SSSS-SS-----------------------------------------S-S-------------------
---------------------------------------------------------------------S----------
----------S---S------------S--------S-------------------------S-SSSSSSSSSSSSSSSS
SS--S--------------S------S------SSSSSSSS--------------------------------------S
--------------------------------------
>forward_214
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----------------------------------ACTTGGCACCACATGGAGAG--------------------------
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>reverse_2047
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----------------------------------------------TACAGAATCTCCGTCGCTGC--------------
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