>input_sequence_86557
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----------------------------------------ATGGACCAACCGGTGCTGCGGCCGCCGGACCGGTCGAGGA
CGTCGTGGCCGGAGCTGGTGGGCTCCTCATCCTTCGCCGCTGGGTTCGTCATCGTCTACGACAGGCCCGATGTGCACGTC
GACTTCTTCGTGGCCGGACAGGCTCTCCCGCCGGGGGACTCCAAGCGCGTCGTCGCCTTTACCGACGGCAATAACACAGT
CGTCTACCCACCATACGTCGGCTAG-------------------------------------------------------
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>chr6B_1_TraesCS6B01G103300
CTCAACCATCAAATGCACTTCCCACCTCTTGTGTGCCACAGTAGCGTCCCCTTTTTCCTATAAAAGGAGGCCCAAGGCAT
ACGGGAGGGGGATTCGGCTTTTTGGACTATGCACGCTCCGTAGCTAGTTGAAGAACGCAAGAACATTCAGATATACACCA
AAGTAGGACTAGGGTATTACGCGGTCCTCGCGGCCCGAACCTGGGTAAACGATCTGTGTGCTAGCTCCTGGACTCGCTCT
TATCACAACCTCATGCCCGCCGTCCACAGTAGGGATTCCAGTGATCTCATAGGTGTCGTTTCCACCGACAGTATATATTC
CAGAGCTCCCAAGCGGGACCTACATGTGGGAATATATCGGGTTATAATCTAGTTATCTCCACTAATACGCAGGGGTATAT
TCGCATACGAATGTAAAACTTTTACAGGGATTCCAAGCGGGGCCTAACGCATCAAGGAATACTTTTAATAAAACCGGTTG
TGCAATTCATGCATGTACATTTTCTATATACGCACGCATATGTATTTTGTTCTAACCCTAGGAAAAACGAGCAAGCACGG
TACAAACAAAGGAATATTGTTCCGGTATACTCCGTCAAGGTAAAAGGTCACCATCTTCGACATGTCACATAAGGATAGGT
TGAGATCACAACGTTCATCACGCGAGAAATATTGCCCATAGAGCAACGTAGAAGCCCGTAGTTGACGACGGCTAACACGA
TGCATGATTGTACGTAGTAATTGACATGACAGTTAAGAAATCTATCCTAGGCATCTATATATATGCACTATATGCACTCT
AATCACAAGCCTGGCCACCATCTCCCAGAATAAGAGCGAAACATCAGCAGCAGCTAAGCTACCTAGAAGGTTACCACTAA
GCACTTATGGTTCATTGTTTCGTATCTTCTCAAAAGAAAAGAGAAAAGCATGCATGTGTTGAGAATTAATTTTGCGTCGA
TCTTGGATTTCAGATCATGGGAGACACCGCTGTGGCGCCGATGGACCAACCGGTGCTGCGGCCGCCGGACCGGTCGAGGA
CGTCGTGGCCGGAGCTGGTGGGCTCCTCATCCTTCGCCGCTGGGTTCGTCATCGTCTACGACAGGCCCGATGTGCACGTC
GACTTCTTCGTGGCCGGACAGGCTCTCCCGCCGGGGGACTCCAAGCGCGTCGTCGCCTTTACCGACGGCAATAACACAGT
CGTCTACCCACCATACGTCGGCTAGCCTTTCCTAGCTACGACATGCAGATCCTAGCTAGCTTAGCTTAATTTACTCCCTC
GGTTCTGCATATAAAAAACTTTATAAAAAAATAACGATAGTCACGGTATAGAACCAATATTATAGATGCATCATGAAATA
AATTTTTAAATAAATCTATATGCAAACTAAAAAGGAACGGAGGAATTACATGCTAGCCAGGTCTAAATAAATAATGATGG
AGATTGTATACTTGTCACTCCCTATACAATAAATAGGTTCATGTACTACATTTATTAAGTGTGTGTATATATATGGTATT
GTTTTTCCATATGTACGTTGTGGCCGCTATAAATACAAACGTTGCAAGGTAAGGGCATCATTCACGGCGACCCG-AAATT
TTCTCCCGCATCCGTTCGTGAACAGAGAAGGACCAGTCCACGGACATGGATGCGGGAGGCCACCATCCGACGCTGCACAT
ATGCATCCGGCCAACGATTCGAACTAACCGAACGAAATTTGTTCAAACACGGTCGGATTTCATATAAACATGACGGATTT
CAATACATTTACATC------------AACGAAGTGGTACTAGTCCAGCTCTGGAGGTATAACTAATACCTAACCTAAAT
GGCCGCCGGCGCCCGTTCCCCATGTC-CGGCCATAAGCCCCGAGAGCTGAAGTTTCGCCTTCTCTAGCTCCGCCTCGACG
CTCTCCAGCTCCGCCTTCATAACATTCGCCT---------------CCGGAGCCTCAGGAAGCGAAGTTGTCCGCCTCCA
CGTCGCTGCCAAGCGGCTAATCGGCCAACGATGTTCAGCCCATCAAGCTTGGCTTCAACAGGCGTGGAGGAGCGGTGGCC
TTTCTGGGACCCAAGCGGC-ACGACCTACTGTGCACTACTCTTCCCCGCTGTCGGCGACGCCCGCGGATGTGCCGGCTT-
--CATGGTCATGGTGGTGGGGCGCGGCCTCGATGATGACCTCCTCCTCCTCCTCCTCGTCGGTCTTG-CGAACACCGCCT
CGCCCGCCTGGTCGCCCTC
>chr7B_1569
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------------------------------------------------GTTAGGGCATCTTCAACGGCAACCCGCAAATT
TTCTCCCGCATCCGTTCACAGACAGGGGA-AAACATTACACAGATACGGATGCGGGAGGCCGCCATCCAACCATAGCCGC
ATACATTTCAAACACTTTTCCAATAAGCCGGATGAAATTCGTGCAAACACGGTCGGATTTCATATAAACATGACGGATTT
CATTACATTTACAGC------------AACTAAGTGGTGCTAGTTTGGTTTTGGAGGTATAATTAATACCTAGTCTAAAT
GGTTACCAATGCTTGTTCCCCATGTC-CAGCCATGAGTCCCGAGAACTAAAGCTTTGCCCTCTCCAGCTCCGCCTCGGCA
CTCTCCAGCTCTGCCTCCGTAACCTCCACCT---------------CTGGAGACTCGGGAAGTGAAGTTGTCCGCCTCCA
TGTCGCCGCCAAGCGGCTAATCGGCCGCCGATATTGAGCCCCCCAACCATGGTATCGACGAGAGGGGAGGAACGGTGGCC
TTCTTGGGACCCGTGCGGTGGCGACCTACCGTGCACTGCTCTTCCTCGCTGCAGGCTGCGCACGCGGACGTGTCAGCTT-
--CGTGGTCGTGGCGGCGGG------------------------------------------------------------
-------------------
>chr4A_1569
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------------------------------------------------GTTAGGGCATTTTCAACGGCAACCCGCAAATT
TTCTCCCGCATCCGTCCACGGACAGGGGA-ATACATCCCGCGGATACGGATACGGGAGGCCGCCATCCAACCGTAGCCGC
ATACATTTCAAACTCTTTTCCAATAAGCCGGATGAAATTCGTGCAAAAACGGTGGGATTTCATATAAACATGACGGATTT
CATTACATTTACATC------------AACTAAGCGGTGCTAGTTTGGTTTTGAAGGTATAATTAATACCTAATCTAAAT
GGTCGCCGGCGCTTGTTCCCCGTGTC-CGGTCATGAGCCCCGAGAACTAAAGCTTCGCCCTCTCCAGCTCCGCCTCAGCG
CTCTCCAGCTCTGCCTCCTCCACCTCCACCT---------------CTGGAGACTCGGGAAGTGAAGCTGTCCGCCTCCA
TGTCGCCGCCAAGCGGCTAATCGGCCGCCAATATTGAGCCCCCCAACCAAGGTATCGACGGGAGGGGAGGAGCGGTGGCC
TTCTTGGGACCCGTGCAATGACGACCTATCGTGCACTATTCTTCCTCGCTGCCGGCTGCGCACGCGGACGTGTCAGCTT-
--CGTGGTC-----------------------------------------------------------------------
-------------------
>chr6B_1572
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---------------------------------------------------AGGGCACCTTCAACGGCAACCTGCAAATT
TCCTCCCGCATCCGTATGCCAACAGGGGA-GACCAGTCCACGGACATGGATGCGGGAGGCCGCCATCCAACCGCAGCCGC
ATACATTTCAAACTCTTTTTCAACAAACTGGATGAAATTCGTACATATCAGGCCGAATTTCATATAAACATGATTGATTT
TATTACATTTACATC------------A---AAGCGATGCTAGTCCGGCTCTAGAGGTATAATCAATACCTAATCTAAAT
GGCCGCGAGCGCCCGTTCCCCGTGTC-CGGCCATCAACCCTGAGAACTGAAACTTCATCGTCTCCACTTCCGCCTCGGCG
CTCTCTAGCTCCGCCCCCGTAACCTCTGCCT---------------CTGGAGGCCCAGGAAGTGAAGCTGTCCGCCTCCA
CATCGCCACCAAGTGACTAATCGGCCGAAGACGGTGAGCCCAAAAAGCTTGGCGTCGACGGGAGGAGAGAAGCGGTGGCC
TTCCTGGGACACGAGCAGTGGTGACCTACCATGCACTACTCTTCCTCGCCGCCGCCTGCG------GACGTGCCGGCTA-
--CGTGGTCGCCGCGGCGGGGCATGGACTCGACGATGTCCTCCTCCTTGT------TGTTGGTCTCGCCAAACACCGCCT
CGCCCGC------------
>chr3A_1572
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---------------------------------------------------AGGGCATCTCCAACGACAACCCGTAAATT
TCCTCCCGCATCCACCCCCAGGTAG-GATGGATTAGTCCACGGACACGGATGCGGG-GGTGGCCATCCAATGCTTCCCGC
ATACATTAGGACAACAATTCGAACTAACCAGGCAAAATTGGTTCAAACACGGTCGGATTTCATATAAACATGTAGGATTT
CATTATATTTTGGACACACATCAACGAA---AAGCGGTGCTCGTCCAGCTCTGGAGGTATAATTAATTTATGTAATATAT
GATCGTCGGCGCCCGTTCCCCGTGTC-CGGCCATGATCCCTGAGAACTGAAGCTTCGCCTCG---AGTTCTGCCCCAGTG
CTCTCAAGCTACGCCTCTGCAGCTTCCACCT---------------TCGGAGCCACGGGAAGTGAAGTTGTCTGCCTCTA
CATTGCCACCAAGCGGCTAATTGGCCGACAATGTTGAGCCCACCAAGCTTGGCTTCAATGGGAGGGGAGGAGCGTTGGCC
TTCTTGGGACCCAAGCAGCGGCGACCTACCGTGCTATACTCTTCCTCGTGGACGGCGGTGCCCGCGGACGTGTCTGCTT-
--CGTGGTC-----------------------------------------------------------------------
-------------------
>chr3D_1635
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-----------------------------------GTCCGCGGACATGGATACGGGAGGCCGCCATTCAACGCTGCCCAC
ATACATCGGGCCAACAATTCAAACTAATCGGAAGAAATTCGCTCAAACACGACCGGATTTCATATAAACATGACAGATTT
CATTACATTTATATC------------AACTA--CGGTGCTAGTCTGTCTGTGGAGTTATAATTAATACGTAATCTAAAT
GGTCGTTGGCGTCCGTTCCCCGTGTC-AGGCCATGAACCTCGAGAACTAAAACTTCTCCTTGTCCAGCTCCACCTCGGCG
CTCTCCAGCTCCGCTTCTGTAACCTCCGCCT---------------CCGGAGACCCGAGAAGTGAAGTTGTCCGCCTCCA
CGTCGCTGCCAAGCAGCTAATTGGCCGCCGATGTTGAGCCCACCAAGCTTGGCGTCAAAGGGAGGGGAGGAGCGGTGTTC
TTCCCGGGACCCGAGCGGCGGCAACCTACCGTGCACTACTCTTCTTCGCTGCTGGCGGCGCCCGTGGATGTGCATGCTT-
--CGTGGTCGTGGCGGCTGGGCATGGCCTCGGCGATGTCCTCCTT---------CCTGTCGGTCTCGTCGAACACCACCT
CGTCCGCCTCATCGCACTC
>chr7A_1635
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-----------------------------------GTCCGCAGACACGAATGCGGGAGGCCGCTATCCAACCGTAGCCGC
ATACATTTTGACAACAGTTCGAACCAACCGGACGAAATTCATGCAAATACGACCGGATTTCATATAAACATGAAAGATTT
CAGTACATTTACATC------------AACTAAGCGGTGCTAGTCCGGCTCTAGAGGTATAATTAATACCTAATCTAAAA
GGTCGCCGGCGCCCATTCCCCGTGTTTCGGCCATGAGCCCCGAGAACTGAAGCTTCGCCTTCTTTAGCTCCGCCTCGACG
CTCTCCAGC---------------TCCGCCT---------------CCGGAGACCCGGGAAGTGAAGTTGTCCGCCTCCA
TGTCGCCGCCAAGCGGCTAATTGGCTGCCGATGTTGAGCGCACCAAGCTTGGCGTCGCCG---GGAGAGGAGCAGTGGCC
TTCCTGGGACCCGAGCGGCGGAGACCTACCGGGCACTACTCTTCCTTGCTGACGGCGGCGCCCGCGGACGTGCCGGCTT-
--CGTGGTCGTGGCGGCGGGGCGCGGCCTCACCGATGTCCTCCTC---------CTCGTCGGTCTTGTTGAACACCGCCT
CGCCCGCCTCGTCGCCCTC
>chr3A_1641
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-----------------------------------------GGACATGGATGCAGGAGGTCGTCATCCAACACTACCCAC
ATACATCTGGCCAACAATTCAAACTAATCGAAAGAAATTCATTCAAACATGACTGGATTTCATATAAACATGACGAATTT
TATTACATTTATATC------------AACTA--CGGCGCTAGTCCGACTATGGAGTTATAATTAATACGTAATCTAAAT
GGTCGTCGGCGTCCGTTCCCCGTGCC-AGGCCATGAGCCTCGAGAACCGAAACTTCTCCTTGTCCAGCTCCACCTCGGTG
CTTTCCAGCTCCGCTTCCATAACCTCCGCCT---------------CCGGAGACCCGAGAAGTGAAGTTGTCTGCCTCCA
CGTCGCTGCCAAGCGGCTAATCAGCCGTCGATGTTGAGCCCACCAAGCTTGGTGTCAAAGGGAGGGGAGGAGCGGTGGTT
TTCCTGGGATCCAA---GCGGCAACTAACCATGCACTACTCTTCTTCGCTGCTGGCGGCACCTGTGGATGTGCCTGCTT-
--CGTGGTCGTGGCAGCTGGGCATGGCCTCGGCGATGTCCTCCTC---------CCCGTCGGTCTCATCGAACACCGCCT
CGCCCGCCTCATCGCACTC
>chr2B_1701
AA------------------------------------------------------------------------------
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------------------------CAACCAGACGAAATTCGTTCAAACAAGTCTGGATTTCATATAAACATGATGGCGTT
CATTATAATTACATC------------AA---AGTGGTGCTGGTCGGGCTCTAGA-GTATAATTAATACCTAATCTAAAT
GATCGCCGACGTCCGGTCTCCATGTC-CGGCCATCAGCCCCGAGAACTGAAGCTTCACCATCTCCAGTTCCGCCTCGACG
CTCTCCAGC---------------TCCGCCTTCGTAACCTCCGCCTCCGGAGACCCGGGAACTGAAGTTATCCGCCTCCA
CGTGGCCGCCAAGTGACTAATCGGCCGCCGATGTTGAGCCCACCAAGCTTGGCATCAACGGGAGGGGAGGAGCGGCTGCC
TTCCTGGAGCCAGAGCGGCGGTGACCTACCGTGCACTAGTCTTCCACGCTATCGGCAGCGCCCGCGGACGTGTCGGCTTC
TTCGTGGTCATGACGGTGGGGCGCGGCCTCGGTGTTGTCCTCCTCCTT------CTCATCGGTCTCGCCAAACAAAGCCT
CGCCCGCCTCGTCG-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--------S-SS-----S-----------
------------------S------S-----------------------------------S------S-------S--S
--S----S-------S-----------------------S----------------------------------------
--S---------------------------S-------S-----------------------S----------S------
----------------------------------S----------S------S---------------------------
----------------S------S-S------------------------------------S-----------------
--------------------------S--------S------S----------------S--S-S---------------
--S--------------------------S---------------S-----------S----------------------
---S---------S-----------------------S---------SS-SSSS--------------------------
---------S---------
>forward_561
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-------------------------------------------------------------GAAAAACGAGCAAGCACGG
T-------------------------------------------------------------------------------
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>reverse_1529
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--------ATATGTACGTTGTGGCCGCT----------------------------------------------------
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