>input_sequence_86556
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--ATGGCCCCCGCTGAGAGATCCTGCACGCTCGGCCGCTTCGCCGCGCACGAGGCGGCCCCGCCGGAGACCCTCCACATC
GTGCGCCTGCAGCGGCTCCGCCTCCGCCAAGCAGCAGAGAGCTGCCTCGACCCTATCGCCGAGGAGGAGGGCAAGACGA-
-----------------------------------------------GCTCGCCCAGAGCCCACGGCGGCAGCAGCAGCA
ACGCCACCGTCGACCTTGCGCAAAGTCTTAGCTGA---------------------------------------------
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>chr6A_1_TraesCS6A01G413100
GTACAATGGGAGGTGCTTAGGGGAGGTGCTTAGAAAAATAAATCAAACTTTCTTTAAGCACCGGTGCCTATTTGTACAAG
ATAGACACTTAGTTAAGCGTCTATCCTGTAGAAATAGGCACCGGTGCTTCAAAAAAACCCGGTTTATTTTTCTAAGCATC
TCTCTAAACACCTTCCATTGTACAAGGCCTTAGAGCTAGCTAGCTGGGCTCTCATGCAGGCAAAGTCATGGCTTATAGAT
TACAACGTGCGGTAATTGAGCAATTTCTTTTGAAAAAAAGTGAGGAGGGACCGAGATTATTATTATTATTATTATTGATT
TGTCATTGTGATTCGGAAACGACACAGTACGTCGTTTAAATAACCGGGGCTATATGGCGCCAATTGGGCCAAAACAAGTG
AGCTGTAATTAAGCACGTTTCGGCTGTGCCTGAAAGTATTTCTCCGTCCGGAAATACTTGTCATTAAAATGAATAAAAGG
GGATGTATCTAGATGTATTTTAGTTCTAGATGCATCTCTTTTTGTTCATTCTGATGACAAGTATTTTCGGACGTCCTGGA
CCAACGTAATGTATGCATGTGTTGTGTAGTACGTCCACGTGCGTATGGTTGCTGC---AGATGAGTGGCCCAGGTAGAAG
AGGAGGCGTACGTGCGTGGCGCGATCGTACAGGAACAGAGAAGATACTTGC-----------------------------
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---------------------------------------TGCATAGAAAGGATGTGGGTTGCTTTGTCCGTGGTGCAAGC
GAGAGCGACTGAAAATGAAGGGAGGAAGGCGACCCAACAAGCAGCACCTACCTGGAAGGAA-------------------
-----GCCACAAATCGTCGATCGCTCGCGTGCTCCGGTACTGCTCCTTCCGGCGCCGGTGGGCCTCGCCGGCTTTATATA
AACAACAAACAGAGAGCTGCTCTGCTCT--GCTTAACCCACCGTGCCCCGCCACCACCGCACATCTGCAGCAGGTC----
---------------------TCTCCGCGTCGCTGCAACGGCAACAGATCGCGCAAGAAGGCACCAGACCTGACAAGTCA
TCATGGCCCCCGCTGAGAGATCCTGCACGCTCGGCCGCTTCGCCGCGCACGAGGCGGCCCCGCCGGAGACCCTCCACATC
GTGCGCCTGCAGCGGCTCCGCCTCCGCCAAGCAGCAGAGAGCTGCCTCGACCCTATCGCCGAGGAGGAGGGCAAGACGA-
-----------------------------------------------GCTCGCCCAGAGCCCACGGCGGCAGCAGCAGCA
ACGCCACCGTCGACCTTGCGCAAAGTCTTAGCTGATAGGCCAGATCAATTAGACACAGAGTTTAGTACCACTAGCTGAGC
TCTATC---------GCTGTGGTATGTGTATGTAATGTACCACGGTGCAGTTCCATCCATGAATTAGTC----CCATCCA
TGAATTGATGATGCGAGCTGGTTAATTTGATGCCGAACAATCGTGACCACTGCCTCAACAACTGTGCGAATTTACTGACG
GCGGCCATATC-AGTGGAGACTGAAAATCTCATCCTTGCCCTTTGCTCTACTCTGAA-TCTGAAGAAAACTCTGCTTCTT
GTGTGCGCAACGTTCTCGACATGAGAACATGTAGTGCTGTGAATCCGTCTTCACCATTCATTTTGCGCCGGAGGAGC---
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-------------------------------------------------------------------AGGCTCCCACCCC
AGCCCGGATCCCACAAACCCTAGCCAAGCCACATGATCACGCGCTTCGTGTCGATTCGACCTGGTGGTCGCCCTCCTCGT
TCCAGATGCTACTGGAAATTTCTTCTGCTGCAAAAGGGGGGCGGATTTCGGTGTTCTCAGCTGGATTGTGATCTATCATG
ATTTTTCC----------ACCTTAGTGGCAGCAAATGATTGATGCTAGCGCAGTGTTTTTGTTTTGAGGTTAACCGTTAA
TCAATTCAAACACCACCACCAGCATGTCTGCTGCACTTCTTAGTTTTGCTGTCCACAATATGTTCTATAGATCTGAGCTT
CTGCCCCCTCTTCATATTTGATTGTTGTATTTCCGCTAGGAGATAGCAAAAGGAACCGTGTTGACTGATTGTTGTTCTCT
ATTTTCTC-TCTGTTCTATAAACACTTTCTGTGACTGAAGTTACGTGGATCAGGGCAAAGCAGGAAATCCAGAGGGACTG
AAACTTAGT-------ACATGCACTTCGGCAGAAATGCTATATGTATCTAGTTATTCCTTTTTCTTCAATTTATTTTGTT
TATACAGCCATGCAAATATGTGTGTAAATCTTCTTCGGTGTGACCTATAA-CTATAGGGAGGATCTGTGTGGTCAGACAG
GAGGGTTATAGTTCAGACA
>chr6B_573
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------------ATGTATGTGGTGTGTAGCACGTCAACGTGCATATGATTGATGCAGAAGAGGAGTGGCCGAGGTAGAAG
AGGAGACGTGCGTGCGTGGCGCGATCGTACAGGAACAGAGAAGATACTTGCAGAGGAAGGGCGTACGTGGCACAGCTGAG
CGACTGAAAAGGAAGGGAGGAAGGCGACCCAACAACCATGAGAGTTGAGACCACCGGGAATATATGGTGCACCAGGGCAA
TTGATGCTACCGGTGCACCGGTCCCTCGCCACACATTCTAAAATGTTTAAAAAAAACGTAAAAAATTTATTGCTCGAGAT
ACAAAAATGATAAATTTAACACTGAGTAGTACATAACACAAGTTGGGCTTCAGTTTTGACCCATTAGCACATTAATGTCA
AATTTGTCATTTTTGTATCTTTAGCAATGTTTCGATTTTTGATTCAAATTTTTGTGACAACTTACGTTGATGTTGATGTT
TAGTACAATCAGTAGCGAGACGATCTCCTCTGTAGCTGTGGTGTGTGTATGTACAACGGTGCAGTTCATGCTTGCGTTTC
ACAAAAAAAAAAGTTCATGCTTGCGTGCGTGCTCTAATTAGTCCATCCATGGATTGATGATGCGAGCTGGTTAATTTGAT
GCCGAAGAATCGCGAACACCGCCTCAACAACTGTGCGAATTTGCTGACTGCCATTGGAGACTGAAAAATCTCATTCTTTC
CCTTTGCTCCGCTCTGAATCTGAATAAAACTCTGCTCGCTGTGTGCGCTACGCACCGACACACGAAGACGTATTACACGT
AAATCCGTCTTAACCATTCCTTTTGCGCTAAGTCGAGGCCATCCCATCTTCCGCACTCGCGAGAATAGAGGAGGAATATG
GTGTGGCTGCAGCAGCGCACCGACACGGCCAGTCTCTTCCTCACCGGGGCCGTCCTCATCGCCGTCGCCGCCCGCCCCTC
CTACGCCAACATCGAGCTCTCGCGCGCCAAGGCCGCCCGATGCTGCCATGACCAGTAGATGTGAGTCCCGAAGGTTATGC
TTCAGCGCAAAGAACGGGCCGCTTCCCCACGGATCATCAGAGTGGAACCACCGCTTGATGCTTCAGCCGGAGGGGAAGGG
TCCCTACGCTACACGGACCAAAGTTGTTTTTTGGATAAGGGGACGGCGGTGGCCCGCAAGAGGGCAAGACACCGGTTGTG
TATGCTAGTGGTGCCTCGGCGGTGGCCTTCATGGGACTCAAGCAGCGGCGGCCTCCCGTATTCTACTTCTCCTAAACGAT
GGCGGCGGATGCGGATGCGCTGGCCACCGACTCATCAACCTCCGTGCACCCGGCTTCTGTCTCAGTGTGTCGGTGGCGCA
GGAAGCATGGGATGACGGGGAGTCATCGACAGTAGCGTTGGCGTGGTTCTGTCGGGCTAGGCGAGGGAGATGGAGCAGCG
AGCTTCCTCGCTCGTATCCGGACGGCTCGGCGGGCCACCCAGCCGGGTTTTTATGCCGGAGAACTGCTCTTCCGGCTCGT
CGGGTGCCATTGAAAGATTGGAGAAAATGGTGGAAGGAGGATATGGGGAGCGGCGGAGTGGTGCGATTCTTCCCTGGTGT
CTGCCTGGTTTATATAGAGGGCGGACGGGAGGAGCTTGCCCGATGTTGCGTTTAACCCCGACCCGCTCATGAACAGACGT
GTGGTCGAAGTACGTTTCTTGGCTTCCACGCGGGGTTAATGGAGCCGTTTGAATGCGGCGAGGAGGCATGTTCATCCGAT
GCGTGAAGCGAGCGGCGCCTCCGACCAGTGCGCTGCTTCAGAGGCGGAGGCAATGAGAGGCCGCGTCCGCCCTAAGCCAT
CATCAATGGTGAGCGGCGCGCTCTACAACGACATGAATGCGAGCAGGAAACGCGTGCGGGCAAGGGAGGAGGGGTTTGGG
TGGGTCAGGGCGGTCAGAAGCGGGCGTGACAGTGGTCCGGACTCCCGCAAACCTTCCTCACGTTTATCTCCAGTTTGCGG
AAGAAAACGCGTTTAGACTGCGCCGTGGACTGATACAACGATACAGACCCGCGCTGAATGACTTACATGCTTCGGACATC
ACGGTCCAGATGATTGCGGAGGGAGTTGGCGTTGGAGATGCCCTAATAAAATAGATTTTTTTTGTTAGATCACTGCGTGC
GTCAATTAGGCCAAAACAATTGAGCTTCCCGTGGGAAGCATGCATGATGTGCCGATGATTGTGGTAGTTGAAGCACTAGC
ATTGCAGTGAAGCAGGCCGGCCAATGGGAGGAAGTAATTGAGCACGTTTTGCAGGCCCGTGCCTGAAACTAGCAAGTTGC
GGTTAGGCCACGCAATGTATGCGTTGTGTAGTGCGTCCACGTGCAGAGGAGTGGCCTAGCCGAGGTGCAAGAGAAGGCGT
ACGTGCGTGGTGCGATTGTACAGGAACAGAGAAGATACTTGCATAGAAAGGATGTGGGTTGCTTTGTCCGTGGTGCAAGC
GAGAGCGACTGAAAAGGAAGGGAGGAAGGCGACCCAACAAGCAGCACCTACCTCGAAGCTACGGGCGCACGCGCCAACGC
GGGTGGCCACAAATCGTCTGCCGGTCGCGTGCTCCATTGCCC-------------------GCCTCGCCGGCTTTTATAT
AAACAGACAA----AGCTGTTCTGCTCTTCGCTGAACCCACCGTGCACCACCACCAACACCGCACACAGCAGCAGCAGCC
AGCAGGCGAAGAACCTCTCCGTCTCCGCGTCGCCC------CAACTGATCGCGCAACAAGATACCCGCCGGTCATGGCTC
CTGCCACATCGCCCTGCGCCGTCCT---------CCGCTTCGCCGCCGACGAGGCGGCCCCGCCGGAGACCCTCCACGTC
GTGCGGCTGCAGCGGCTCCGCCTTCGCCGTGCAGCGGAGGGATGCCTGGACCCCATCGCCGAGGAGGAGGAATACGCTGG
GAGCAGGGGCAGAAGCGGCGGCGAACACGACGACGACATCTCCACCGGCTCGCCCTGCGCCCACGGCGGCAGCAGCAGC-
--GCCGCCGTCGACCTTGCCGAGTGTCGTCGTCGATAGGTCGGATCTATTAGACACAGTGTTTGGTAGTACTAGTAGCGA
GTCAATCTCCTCTGAGCAGTGGTGTGTGTATTACCGTGCAGTTCATGTCGTGCGTACTGTAATTAGTCCATGTCCATCCA
TGAATTGATGATGCGAGCTGCTTAATTTGATGCCGAACAATCGCGAACAATGCCTCAACAACTCTGCGAATTTACAGGCT
CTCATACTATTAAGTGGAGACTGAAAATCTCATCCTTGCCCTTTGCGCTCAGCTCTGTTCTGAAGAAAACTCTGCTCGCT
GTGTGGGAGGCGCTCTCAACAGGCGAAGACGTATTGGAATTCATCCGTCTTCACCATTTAGTTGGCGTAAACATGTCCAT
CCCGTCTTCCATGCCCCGCAGAGGCCGAGACTAGGGTCTGTAGTACTAATCCCAGCTCGTTTTCATCGAGCCTTCCCCCT
GTTTGGAGTAGGAGGCGATGGTGTGGCTGCAGTACACGGCGACCCGGCGGCAGCGCGCCGCCACGGCCTGCCTCTTCCTC
ACCGGGGCCGCGCTCATCGCCATCGCCGCCCACCTCTCCTACGCCAACATCGAGCCCTCGCGCGCCAAGACTCCCACCCA
AGCCCGGATC----------------------------ACGCGCGTCGAATTGATTGAAGCTGCTGATCGCGCTGCTGGT
TCCAGATACTAGTGGTAATTCCTTCTGCAGCAAAAGGGGGGC-GATTTCCGTGTTCTCAGCAGGACTTGATCTACTTCGT
TGTAATTTGTATTCTTCGACCTCAATGGCAGCGATGGATTGATGATAGTGCAGTGTTATGTTCTGAGTTAAGCAACTAGC
AAAC----------------------------------------------------------------------------
-------------------------------------------------AAAGAACCGTGTTTGCTGATTGTTGTTCTGT
ATTTTCTTTTCTGTTCTATAAACACTTTCTGTGACTGAAGTTCTGTGGATCGGGACAAAGCAGGAAATCCCGAGGAACTG
AAACTTGATACGTACCACCTGCATTTTCTCAGAAACGCTACGTGTATCCATTTATTCA--TTTCTTTAAGTTATTTTGTT
TGTCCAGCTATGCAAATATGTATGTACATCTTGTTCAGTGTGACCTATCAGCTACAGGGACGATCTTTGTGGTCAGACGG
GAGGATTAT----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS---S-----S-------S-----S------S----S---S---------S--------S---------
-----S---S----------------------------------------------------------------------
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---------------S-------------------------------------S----SS--------------------
------------------SSS--S-----------SS-S-SSSSSSSSSSSSSSSSSSSSS--------------SSSSS
--SS-S-S-SSSSS-----S-------------S------------S--S------S-S-SSSS-SSSSSSSSSS-----
---------------------------------SSSSSSSS----S----------S---SS---S-S-SSSSSSS-SSS
SSSSSS-SS-SS-SSSSSSSSS-SSSSSSSSSSS------------SS-----------------------------S--
-----S-----------------S----SS-----S---S-S-----S-----S----------------SSS-SS-SS-
-------------------------------------------------------S-S---------------------S
SS---S-------------SS-SS---S-S-SS------S-S----S-----------S----S---SS-----SS-S-S
SSS-SS-----------S-----S-------SSSSSSSSSSSSSS--SS--S-SSS-SS-S-S-SSSS------------
--------------------S----------------------S--S--S-------------S-----------S-S-S
SSSSSSS---S-----------------------------------S--SSS--SSS-------------------SSS-
-----S-SSS--S----S---S-S---S-S---S--SSS-SS----------------S-S--S---SSSSSSSSS----
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---------------------------------------------------------------------S---------S
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---SS-S----SS-S---S--S----S--S--S--
-------S---S---S----S-------S-------------S------S-----------S---S-SSSSSSSS-SSSS
SS-SS-SS--------------S-S-------S-SS--------S---S--------S-SS-S-SSSSSSSSSSSS-SSS
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------SS--------------S-
-------S----------------------------------SS-------S--S---------------S----S----
------SS----------S----S--SSS------S----SS------S-S------SSS------S--S----------
-S-S----S------------S----S-----S---S-----------S-----S-----S-----S-----------S-
----S----SSSSSSSSSS
>forward_405
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-----------------------------------------------------------------GGGCCAAAACAAGTG
AGCTG---------------------------------------------------------------------------
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>reverse_4487
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------CAAACACCACCACCAGCATG------------------------------------------------------
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