>input_sequence_86552
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--------ATGGCCTCCAGCG---------TGGCGGCGATGCTGAAGAACAAGATGCTCGTCGCCTGCGTCATGCTCCTC
GCGGTCCTGCTGATGGCGACGCAGATGGCGGCGGCGGCGGCGGGCGACGACGGCGCGGCACGCCGTCGCCTGCTCGATGC
GTGCCAGTACAGAAACTGCAACTGCCGCACATGCTACATTTTCCACTGGGCCTGTTGCGGCTTGTGCTGCCCGCCGGCGT
AG------------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G141900
TCTTTTCTTGATTTGTAAAGCCTCGGATTTTATTTCCCTTGGAACACAGAGATGTTTTCTCCTTGCTATGAGTTTATTAT
TTATTTCCCTCTGTAGAGAGCTCGGAGCACTCCCACAAGGCCAAGGACTCTAGTTGCTGCTAACCATTGTGAAGTGTGGC
GCTAAGAGGATAAAAGTTAGAATTGGTGAATATCTAAGGTAGAAAATGCTCTACCTTTATCTTGAGGAAAAAATGAGTTA
GAATTGGCTCTAGTACTAGAGCCAGATTTCTAAAATAGAGTTAACCACGTGCGGGGTATCACTCATGCAAGTCCAAATTT
TGAGGGAGAAGCAGATGAAGAAATGCAATATTCACGTGGGCCTAAAAATAGATGCTAACAAAAGGAGTTTAACCTTGGAG
CAAATTTAGGTCTCAGAACCGAATTCTAGCATTTCTCTTAGCACCCGTGACATTGCTCACGCTCTGTTCTGCTCTGCTCT
GCTCTGGACTAGTTATTTCAAAACTTGGGCAGTGAAACTCGGCCGTCGAAAAACGTGGGCCGACGTGGAAGTGTACTCCT
CGCTCTATCTATCTTACGGTCATGTCGACGAGACGA-------CGACGATACTGTGCCGTTGGCTGCTTG----------
--------------------TACTCATGAAAATCTTGTCGGCCGCTGAACAACTCGCATCCTCACTTGTTAGGTACAAAT
ACACTGCATCGCATGA--------ATTCCGTTGAAATTATTGGTGACTCGATTCAACGATGACGGCTTTGCTTGTTGTAT
CCCAGCCAAGTGGCTTCCCCCTCCATCCATATCCATGACCCTT---CTCCTATAAATAACAGCCCTTCTTCCCTCTTCCT
CCATACACCACCAGCAGCTAACGCCGAGCACTCCGTCTCAGCATCTCACCAAGTAAGATGATGTTTCTACATCTTCCGGG
AGAGCCATCGCAGTGACAAGTGTGCATCTCTCTTGATTATGGTGTTCTTTTTTTTTTTTGTTGTTGTTGCATGTAGCCAG
CCGAAGCGATGGCCTCCAGCG---------TGGCGGCGATGCTGAAGAACAAGATGCTCGTCGCCTGCGTCATGCTCCTC
GCGGTCCTGCTGATGGCGACGCAGATGGCGGCGGCGGCGGCGGGCGACGACGGCGCGGCACGCCGTCGCCTGCTCGATGC
GTGCCAGTACAGAAACTGCAACTGCCGCACATGCTACATTTTCCACTGGGCCTGTTGCGGCTTGTGCTGCCCGCCGGCGT
AGGGGACGGCGGCACCCACGGGCCGCTGCAGTTTCTCACCTGCAGAGGTTTGAATAATGCACATGTACGTGGTCACGTT-
ACACGTGGCTGCTGTTGTCTGTCCCAATGCTAGTCGTGGTCGTCGTCGTCGTTGTCAGTGGTTCTGATGACGCGCGCTCT
TTGCAATTTACTGTCAAGTTCTGCGTGTGCGCGACTGTGCATGCAATGCACGCTTAAGTGAATGGGAATGCTACTTCATC
TATCTGGTTTTGGTGTTGATCTATTGCTTGACATAATGCCATGTGATGTGAGCTTCCTGCGTCGATGCTTCCTCGTCTTT
CTTCCGACCATTTTTCACGTCGATTGGGGTAGCCGGGTAGAGCTGGGGGAATGCTTCCTGTTTTGGCCTTGTCTCTGTCG
CAGAGATACAAGCATAAATTATATTTTATACCCTCTTCGTTTAAAAATATTTGTCCGGAAAATGAATGTATCTAAACGTA
TTTTAGTTTTAGATACATCCATTTTTATTCATTTCTCCACAAGTATTTGCGGACGGAGGGAGTATTATATTACAATAATT
AAAGTGGCTAAGCTAGCCCTTATCATATGCATTTCACGTTGTAGCTGCTGCTTCATCTCTAAGTGACATGTGTAACCACC
TAAGCTTTGGATTTTCTCTTTTATTTTTAATTTTTTACTATTTTCTCTTTTATTTTTAATTTTTTTACTGCCTTGAGAAA
TTGCATGGAGATGTCTTACAACTATAGTGGTCGGTTTCACTTCCAGAAATATCCCACCCTGGATCCCACGCACAACAATT
ATCTCGCCTCTTTTTTTTTTCTCTTCCTGCTGCACCTTCCTCAACCCTATCCCATTTTGAATTTTCATTCAAAAAATTCC
CAGCCCTGCCGCACCTCCTCCTCCCCACTTCATAGCAATCGTGCCGCCTCTCCTCTACCTTCCGTCCTTGGTACTGACGA
GGTAGGCCACCTTCGTCTTTGGTGTTGCACCTGGAAGCACCTC
>chr6D_1
TCTTTTCTTGATTTGTAAAGCCTCAGATTTTATTTCCCTTGTAACACAGAGATGTTTTCTCCTTGCTATGAGTTTATTAT
TTATTTCCCTCCGTAGAGACCTCGGAGCACTCCCACAAGGCCAAGGACTCTAGTTGCTGGTAACCATTGTGAAGTGTGGT
GCTAAGAGAATAAAAGTTAGAATTGGTGAATATATAAGGTAGAAAATGCTCTACCTTTATCTTCAGGAGAAAAA-AGTTA
GAATCGGCTCTAGTACTAGAGCCAGATTTCTAAAATAGAGTTAACCACATGCGGCGTAT-ACTCATGCAAGTCCAAATTT
TGAGGGAGAAGCAGATGAAGAAATGCAATATTCACGCGGGCCTAGAAATAGATGCTAACAATA-----------TTTGAG
CAAATTTAAT---------CGAATTCTAGCATTTTTCTTAGCACACGTGACATTGCTCACGCTCTGGTCTGCTCTGCTCT
G-----GAGTAGTTATTTCAAAACTTCGGCCGTGAAACTCG-CCGCCGAAAGACGTGGTCCGACGTGGAGGTGTACTTCT
GAC----TCTATCTTACGGACAAGAAGCCAGCAAAGGGCATGTCGACGAGACTGTACCGTTGGCTGCTTGAGCTGGAGCT
GGAGACTCCTGGACATACATTACTCATGAAAAAGTTGTCGGCCGCTGAACCACTTGCATCCTCACTTGTTAGGTACAAAT
ACACTGCATCTGTGAGCGGCGTGCATTCCGTTGAAATTAATGGTGACCCGATTCAACGATGACGGC-TTGTTTGTTGTAT
CCCAGCCA-GTGGCTTCCCCTCCATCCATGATCCATGATCCATCCCCTCCTATAAATAACAGCCCCTCCCTCCTCCTTTA
CAGCACCAG------AGCTAACGCCGAGTACTCCGTCTACTCACCTCGTACGTAAGAATGTAAGATGCTCTGCCTCTTAT
GATAAGTATCTCGGCGACTATCTGTATCTCTCTTGATTACGTGTTTTTCTTTTGGG-----------TGCATGCAGCCAG
CTGAAGCGATGGCCTCCAGCGGCGGCGCCGTGGCGGCGATGTTGAAGAACAACATGCTCGTCGCCTGCGTGATGCTCCTC
GTGGTCCTGCTGATGGCGACGCAGATGGGGGCGGCGGTGGCCGGCGACGCCGGCGCGGGACGCCGTCGCCTGCTCGATGC
GTGCCAGTACAGAAACTGCAACTGCCGCACTTGCTACATTTTCCACTGGGCCTGTTGCGGCTTGTGCTGCCCGCCGGCGT
AGGGGACGGCGGCACACACGGCCCGCTGCAGTTTCTCACATGCAGAGGTTTGAATAATGCACATGTACGTGGTTACAGTA
ACATGTGGCTGCTCTTGTCTGTCCCAATGCTAGTCGTGG-----------------------------------------
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>SNPs
------------------------S----------------S--------------------------------------
-----------S-------S---------------------------------------S-------------------S
--------S------------------------S-----------------------------S----S----SS-----
----S-------------------------------------------S-----S----S--------------------
------------------------------------S-------S----------------S-SSSSSSSSSSS--S---
--------SSSSSSSSSSS---------------S---------S---------------------S-------------
-SSSSS--S-----------------S---S----------S---S-----S------S----------S-------S--
SS-SSSS------------S--S-SS-S-SSS-SSS-------------S-----S------------------------
--------------------------------SS----------------S---S-------------------------
----------SSSSSS-----------------------S-------S------------------S---S---------
--------S-----------SS-SSS-SSS--------S--S-----------------------S--SSS----S-SSS
-SSS--SSSSSSSSS-------------S---------SSS--S---SSSSSSS-SS---SSSSS-SSS-SS-S--SSSS
SSSSSSSSSSSS-SSSSSSS-S--S--------------S-SSS--S-S----SSSSSSSSSSSSSS------S------
-S---------------------------------------S----------S-----------------S---------
-S--------------------------S--------S---S-------S--------S---------------------
------------------------------S-------------------------------------------------
---------------S-----S-----------------S---------------------------------S--SS--
---S---------S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_967
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-------------------------------------------------------------------TACATCTTCCGGG
AGAGCCA-------------------------------------------------------------------------
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>reverse_1808
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-----------------------------------------------TGCGGACGGAGGGAGTATTA-------------
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