>input_sequence_86551
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----------------ATGGACGGCGGGAAGAAGGGCGGCCGGGAGCGCAAGGCGGCGCAGGAGCGCAGCGACCGCAAGT
CGGGCACCGGGATGAGCGGCGACGCCAAGAAGGGCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCGCCGACGGCTACACC
GACGAGGACCTCGACCTCGTCGCCAACAAGGGGACCGGGGCCGGCGCCTCCGCCTCCGCCTCCGGCAAGAGCAAGTCCTA
G-------------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G036600
AATTCTGGAAGTTTTTCCCAAATTCTACATTGAAAAAAGTTCACAAACCTTTGAATTAAGTATGAAATTCAAGTTCGTGA
AGTTGGAAAAAATCTGGAAGTTTTTCCAAAATTCTACGTTGAAAAAAGTTCACACGTTTTTTAAAAATAAAGAGAGAAAA
AAGGAAGGAAAAAAAAGAGAGAAAGTGAACTACAAAAGAAAGAAACCGTCTAGGAATACTTGTGGGCTTATACTAGAGTG
AACGGTGAGTCAATTAAATATGATTTTTGTTTTGCAAAAACAATTAAATATGAAAAATTAATATGCTGGATCCCGCGCTA
AGGCACACCAAGTTTTTGTGTCTTTTAGTTAGAATATGTTGAAACGC---------------------------------
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----ATTCAAATGTGGTAGTAGTATTTTATTTTA-TTTGAACCGAAATGTGGTAGTAGTATTGTTTAGGGAATGTCTAGG
GCACATCTAGATGTGCCCTACTTATTGCACATCTAAGTGAGTGAATCAAGTATGAAGAGGAAAAGAAAAAAGAAAAAGAA
AATATCCACACGAATTTCAACGTAAGATCAATGATATAAGACTTAGATGCGCAATATTTATGGCACATCTAGATGTGCTT
TAACAAAACTGTATTGTTTAGATACTTTGGGATGGCGATATGGCAAGTGACCCGGCAATG----CATCCATGTGCCAAAG
CCTGCAGCTCAAGATTTTCAGTTGGGATCCGTCCTGTGTGCGTGCGTGTCCTCTTCCCACGTGATCGCGACAGGCGGAGT
ATCCTCCGGCTGACTCACGCCGATCTTATCCCAACCGCCGCGCGACCGTGCCGGCCCCGCAGCCAGCAGATTCATCCATC
CAA-TCCAACGCACGTCGCCAAACAGCAGCACCCAGCCGGCCCCCGGTTCCC-----------------------GATCT
CATCC----------------------------------------------CCCATAAATAAGCCCACCAAGGAAGCAAA
TCGAAGCGCATCG------------------------CATCCGTTTCTCTCGTTGCTAGGTGGCTAGATCTTGACCTTGT
TGTTGCAGGGCCGGCGATGGACGGCGGGAAGAAGGGCGGCCGGGAGCGCAAGGCGGCGCAGGAGCGCAGCGACCGCAAGT
CGGGCACCGGGATGAGCGGCGACGCCAAGAAGGGCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCGCCGACGGCTACACC
GACGAGGACCTCGACCTCGTCGCCAACAAGGGGACCGGGGCCGGCGCCTCCGCCTCCGCCTCCGGCAAGAGCAAGTCCTA
GGGGGCTAGGGTGATGCCTCGCCCGGCCCT-GCCCGCCCGTCGCCTTC----CCGTCCGATC----CATAGGTCTCTCAA
TCGTGTCGGTAGTCAGTTGTCAAATAAAAAGATTTGAGTCGTGGCGTGTTTGGCGTGTAGATATCATCTA------TTTC
CAGTACTAGTGGACTTGCTAATTAGGTATCTGGATCTCGCCC------------------TGTCTTATGTTTCTATCATC
TTGGTGGTT-CTTCTGCGTTGATTTCTGCTTAACTCACTGATCCATCTGCTATAGCACGACAACACT---TTTCTTCACT
GCGCG---------------------------------------------------------------------------
----------------GGGATGACTTCT------------------------------TCCTATATGCAGTCTTGCGTGC
GTGTTGTATGTGT-------TGTGAGAGGTGCTCGTGCCTGCTCTGAAGACGGCAAGACGGAAGCTCATCTCAGCCAAAC
GACGACTCCACCCAAGGAAATCAGGGGAAGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGAAAGGAACACAGAACTGCATTTCATTAGATAGCTTGGCTGGACAAATCTCCAGCTACACAGTCTG
ATACAAAGATTGGAAACTGGCCAAGCCAAATTTCATAGGTACCTACATTCATGACTGTGCCGTGCGCAGCTTGATTACAC
ATTCTTGGACAGTGTTCAACACAAACATTCATGAAACCAACTCTAAACTGAAACTTGATGTCTCTGAAGACAACACCTAA
CTGAGAAAGGTCATAAGCATCAGAGGTGACAGCTT-GCTTCTGCATTATAGAGTCAGTTTCAACTATCACTCGTTGGCGC
CGCATTCTGACTAGCTGCATTCACGGCATGGAGCATCGCCAAAGCTTCC-AGTGAAGTGCATCTGTTACACGGTCCAAGC
TCCCTGCTCCAGCAGCAATTAGCATTCCTTCTTCATTTCTGATAGTGCTGGGGGTGG----AGTCCACTTTGGGGTACTG
GTCTGCAAAACAGGGGAAGAGTTGGCACCGAGCAAAGCAGTGCACCTTGATA
>chr6D_217
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--------------------------------------------------------TACTTATGGGCTTATACCAGAGGA
ACCAGTGAGTCGATTAAATATGAATTTTTTTTGAAG---ACAATTAAATATGAAAAATTAATATGCTGGATTCCGCACTA
AAGCACAACAAGTTTTTGTT--TTTTAGCTATAATGTGTAAAAACGTATTCCCTCCGTCCGGAAATACTTGTCATCAAAA
TGAATAAAAGGGGATGTATCTACATTTATATTAGTTCTAGATACATCTCTTTTTATCCATTTTGATGACAAGTATTTTCG
GAGTATTCAAATGTGGTAGTATTTTTTATTTAATTTTTGAACCGAAATGTGGCAGTATTGTTTG----------------
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--------------------GATATTTTGAGATGGCGATATGGCAAGTGACCCGGCAAGGGCATCATCCATGTGCCAAGG
-CTGCAGCTCAAGATTTTCAGTTGGGATCCGTCCTGTGTGTGTGCGTGTCCTCTTCCCACGTGATGGCGAGAGGT--AGT
ATCCTCCGGCTGACTCACGCCGATCTTATCCTAACCTCCGTGCGACCGTGCCGGCCCCGCAGCCAGCAGATTCATCCATC
CAAATCCAACACACGTCGCCAAACAGCAGCACCCAGCCCGCCCCCGGTTTGCTCCCTTTC---CCCTCCCCGTGAGATCT
CATCCGATCCCCCATAAATAAGCCCACCAAGGAAGAGATCTCATCCGATCCCCCATAAATAAGCCCACCAAGGAAGGAAA
TCAAAGCGCATCGCATAGTGGTTTCCATCCATCCATCCATCCCTTTCTCTCGTTGCTAGGCAGCTAGATCTTGATCTTGT
TGTTGCAGGGCCGGCCATGGACGGCGGGAAGAAGGGCGGCCGGGACCGCAAGCCGGCGCAGGAGCGCAGCGACCGCAAGT
CGGGCACCGGGATGAGCGGCGACGCCAAGAAGGGCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCGCCGACGGCTACACC
GACGAGGACCTCGACCTCGTCGCCAGCAAGGGCGCGGGGAGCGG------CGCCTCCGCCTCCGGCAAGAACAAGTCCTA
GGGTGATG-------------------CCTCGCCCGCCCGTCGCCTTC----CCGTCCGATCGATCGATAGATTTCTAAA
TCGTGTGAGTTG---AATAATTAAATC--------GAGTCGTGGCGTGTTTGGCATGTACATATGATCTA------TTTC
CAGTC---GTGGCCTTGCTAATTAGGTGTCTGGATCTCGCACTAAACTTGGGTTCAGCCTTGTCTTGTGTTTCTGTCATC
TTGGTCGTTCATTCTGAGTTGATTTCTGCTCAATTTACTTACCGATCGATTTCCTACAAGG-------------------
---------------------------------------AGGATTACCATGATTTCTGAACCAGCTGAGCAGAAGA-TGA
AGAAGATCCATAGGGA----TCACTTCTTTCTTACCTTCGTCTGCCTACCTAGGCTGATCCATAGTTTAAAAAACCGGAC
CGACCTACAATTTCA-----------------------------------------------------------------
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----------------------------------------TAGATAGCTTGGCTGGACAAATCTCCAGTTACACAGTCTG
ACACAAAGATTGGAAACTGGCCAGGCCAAATTTCATAGGTACCTACATTCATAACTGTGCCGTGCGCAGCTTGATTACAC
ACTCTTGGACAGTGTTCAACACAAACATTCATGAAACCAACTCTAAGCTGAAACCTGATGTCTCTGAAGACAGCACATAA
TTGAGGAAGGTCATAAGCATCAGAGGTGACAGCTTTGCTTCTGCATTATAGAGTCAGTTTCAACTATCACTCGTTGGCGT
CCCATTC-GACTAGCTGCATTCACGGCATGGAGCATCGCCAAAGCTTCCGAGTGCGGTGCATCTGTTACACGCTCCAGAC
AGCCTGCTCGACCAGCAATTAGCGTTCCTTCTTCATTTCTGATGGTGCTGGGGGTGG----AGTCCACTTTGGGGTACTG
GTCTGCAAAACAGGGGAAGAGTTGGCACCGAGCAAAGCAGTGCACCTTGATA
>chr6B_217
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--------------------------------------------------------TACTTATGGGCTTATACTAGAGGA
AACGGCGAGTCAACTAAATGTGATTTTT---TTGCGAAAACAATTAAATATGAAAAATTAATATGCTGGATTCCGCAAGC
GCAT----------------------------------------------------------------------------
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------------------------------------------------------------AAAATTAATATGAAAAATTA
AATATGAAAA------------------------------------------------------ACAACTAAATGTGATT
TCCCG-------------------------------GATATGGGAAATGACTCGGCAAGG----TATCCATGTGCCGAAG
CCTGCAGCTCAAGATTTTCAGTTGGGATCCGTCCTGTGC----GCGTGTCCTCTTCCCACGTGACCGCTGCAGGCA---T
ATCTTCCGGCTGACTCACGCCGATCTTATCCCAACCTCCGCGCGACCGTGCCGGCCCCGCAGCCAGCAGATTCATCCATC
CTT-TCCAACACACCTCGCGAAACAGCAGCACCTAGCCC-----CGGTTCGCTCCCCTCGCCTCCCTCCCCGTGAGATCT
CATCCGATCCCCCATAAATAAGCG-----------------------------------------CACCAAGGAAGGAAA
TCAAAGCGCAT-------------------ATCCATCCATCCCTTTCTCTCGTTGTTAGATAGCTGGATCTTGATCTTGT
TGTTGCAGGGCCGGCGATGGACGGCGGGAAGAAGGGCGGCCGGGACCGCAGGGCGTCGCAGGAGCGCAGCGACCGCAAGT
CGGGCACCGGGATGAGCGGCGACGCCAAGAAGGGCGGCCGCGGCGGCAAGTTCACCTGGGAGGGCGCCGACGGCTACACC
GACGAGGACCTCGACCTCGTCGCCAGCAGGGGCGCGGGGGCCGGCG---CCGACTCCGCCTCCGGCAACAAGAAGTCCTA
GGTGGATG-------------------CCT-GCTCGCTCGTCGCCTTGCCGTCCGTCCGATCGATCCATAGCTTTCTCAA
TCGTCTCAGTTGCTGAATAATTAGATC--------GAGCCGTGGCGTCTTTGGCGTGTACATATGATCTACTAGTATTTC
CAGTC---GTGGACTCGCGAA-TAGGTGTCTGGATCTCGCA---------------------------------------
-TGGTTGTTCCTTGTGCGTTGATTTCTGCTTAATTCACCGATCCATCATGTTATCGCACGATGCGTATGCTTTCTTCACT
GCGGCGTTTCATCCTGGCTTTGCTTACTCGTGATTTCCTAGGACTACTATGATATCTAAATCAGCTGAGCACAAGATTGA
AGAAGATCCATAGGGAGGGATCACTTCTTTCTTATCTT-GTCTGCCTTCCTAGGCTGATCCTATATGTAGCCCTGCGTGC
GTGCTGTCTGTGTTTGTTGTTGTGAGAGCTGCTCGCGCACCCGACGGCCTCGCCAGCA----------------------
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-----------------------------------------------------------------------GCTCCAAAC
TCCCTGCTCCAGCCGCAATTAGCATTTCCTATTTATTTCTGATAGTGCTGGGGGGTGGAGTAGTCCACTTTGGGGCACTG
GTTTGCAAAACAGGGGAAGAGTTGGCACCGAGCA------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------SS
----------------------------S------S-----------------------------------S----S---
-S-----S-----------SSS------S--S---S---SS-----S---------------------------------
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---------------------S-S---SS--SSS------------------S----S-S--SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS--S-S------SS-
-----SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---S-----S--
-SS-SSSSSSSSSSSSSSSS----S----S----------------------------S---------------------
----------------------------------------S----------------------------------SS---
------------------------------------S-------------------------------------------
----------S---------------------------S-----------S-----------------------------
----------------------------------------------------------------------------S---
--S---------------------------------------S------------------S------------S-----
---------------------------------------------S----------------------------------
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-------------------------S------SS-S----------SSS---------------------S---------
-----S-SSSSSSSSSSSSSSSSSSSS--------------------------------------------S-S------
-------S--S-SSSSS-SSSS--SSSSSSSSSSS------------------------S----S---------------
----SSSS-------------------S------------S-------------------------S-------S-----
-----S---------------------------S-------------SSS-SSSSSSSSSSSS-SSS-------------
---SS---------------------------------------------------------------------------
---------------------S---------------------------------------------S--S-S-------
---S---S--------------------S------S--SSS-SSS-SSSS--S--SS-SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S-----------
-S---------------------S----------------------------S---------------------------
-S--------------------------------------------S-------S-----------------S---S---
S----S-------------------------------------------------------------------------S
-S-----S----------------------------------------------SS----------------S-----S-
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>forward_1123
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---------------------------------------------------------------CCCACCAAGGAAGCAAA
TCG-----------------------------------------------------------------------------
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>reverse_2400
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-------------------------------------------------------------------------------C
CGCATTCTGACTAGCTGCA-------------------------------------------------------------
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----------------------------------------------------
