>input_sequence_86549
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----------------------------------------------------ATGGGGTTCGTGCTGGTGATCTCGCTGC
CCTTCATATTCTTCACCATCCTGCTCGGCTTCGGCTGCTACTTCCTCGGCAAGCACAAGGGCCGCGAGGAGATGCGCGCC
GGCGTCGGCGCCCAGATCTACGGCACGCCGCTGCCGCCGCCTGGCGTGGCCGGGCAGTCCCCGGGGCCGTACCCGGTCCC
GGTCCCGATGAAGAAGGAGGGCCCCGACGCCGTCTGA-------------------------------------------
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>chr5D_1_TraesCS5D01G423700
ACAGAATGTCTGGCCACGCCGTCTCCGTCTTTGGCTTGCCCTTACTCTGACGAGCCTGCAACATCACCTCCGCAAATCGA
CCATGTTGTCTCCGGCTTCGGCTCGTCGACAGCACAACACGGCCGACCATGTTTTCTC----------------------
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------------------------TTGGCCACCATGGTTTTCTCATGGTCAGGCCGACAACACAACACGTTCGACCACAA
GAGAGTAATCCCGGCCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN---------------------------------------------------------------
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-------------------------------------------------------------------------------T
GAAGGCGACGTGGCTGAAACACGCTCCACGGAACAGAAGACCCCAAGGCATTCGACCGTTGCCCCCCAAATTAAGCACCA
GGCCAAACGGTCACCCATACGCAGTCACGCGCTCACGGCAGCA---CACTCCACAAGCTTCCAGCCCCAGCCGCCTTCTT
CCACACGATCCTTCTCCTCCGCCGCTTCCCTCATCCATGTCCCCCGTGTATATAAACCCCCCAATCCCCACGCGGCTTCC
CCTCCCAGCGCAGAGCACC-GCAGCAATTCGATCCCAAGCATCCCCCCACCAACCTCACCATCCTCGTACCGC-------
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-------------------------------------------------ACGTCCAGGCAGCTAATCAGTCAAGCTCAAG
CATCCAAGCCGGCCTCGGATTGAAGGCATCCATCCGGGAGGGAGGGG----AATGGGGTTCGTGCTGGTGATCTCGCTGC
CCTTCATATTCTTCACCATCCTGCTCGGCTTCGGCTGCTACTTCCTCGGCAAGCACAAGGGCCGCGAGGAGATGCGCGCC
GGCGTCGGCGCCCAGATCTACGGCACGCCGCTGCCGCCGCCTGGCGTGGCCGGGCAGTCCCCGGGGCCGTACCCGGTCCC
GGTCCCGATGAAGAAGGAGGGCCCCGACGCCGTCTGATCGGTCGAGCTTCCTCCTCCTCCTCGGCTGGAGCGTTGGTGTT
GTTTGTTTACTGGGTTTGATTATTA------------------------CCGTGTACATGGAGTC---ATTTGTTGCTCG
TTTCTTGTGTGGTGTTTACTGTGAAGGAGGAAGGGATGTTGATCCG--GTGTGATGATTTGTGATCACAGTTGCGTTTCT
ATGAGATGCGCAAATCGATGTAATGAAT------------A-----TTAGTTTGTGATAATCAATCAACCGTTGCTTGGT
TTGTATGCAAT-TTTGCTTTCTCAGGCTTGCGTCTGAAGCTGAGCGGAATTGGGTTTCTGATGTGGTGGAAGAGTTTCAG
GTGTCAAAAGTCAAGCAAAAGGAGGAGTACAGATTCAGGAA--CTTGATAGAGTTGAGCTGGCACTGCCCGCAAAAGTTC
CTTGAAGAATGCTTTTCGATGCAAGGCCAGTTGGATAAATAAATAAAACACCAAAT--------------------CTGA
TTTTGCACATTTCTTCCCCAAATGTTCCAAAAAT---AGCACCAGGTGGCTTGAGATCAGGGAAATTGATCCGGATGGAA
AAGCTGACAGCAT--------------------GGGCTGAATTCTTTT-------------------GTAATACTCATAA
GCAAGAAG----------GCGGAACTATATCAATGTATGGTAAT------------------------------------
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-----------------------------------------------------TAATTGTATGGAGGTTTGAGAGGGGAT
TGTGATTGCACATGTTTTGATTTTGCCCTTTGGT------ACAAGCACAAACAAAAACCAACACATCA-TCATGGCAATA
ATACCGTGATAATTTTGTAAACACACTTCATGTTTTTAATTGCAGTAAGTGCAAATCCATGGTGGAA--TGGTTTGCGGT
GATTAACCGTTGTTTGGTTTCGATTGCAATCAGCTAACCACTTCTCAAGAGGTTTCTTGGTTTGCAATTTCCTTC-ATCA
GGCTTGCATCTGAAGCTGCATGGAATCGGGTTTGTCAAGAGTTTTCAGGTGTAAAGGGCAAGCAAAAGGAGGAGAATAGA
TTCAGGAACTAGAGAGTTGAGCTGGCACCGTCTCTTCTAATATACATACACTTGGTT
>chr5B_41
CTTACTC---------------------------------------CTGATGAACTTGCCTCATCACCTCCGCGATCAG-
CCATGTTGTCTCCGGCTTCGGCTCGTCGACAGCACGACACGGTCGACCATGTTTTCTATTGGCCATAGTCCTGGCCATGG
GCCGCCCGGCACGAACAGCCCGACCCGGCGCTGCTCCCGGGCCGGGCCTGGGCCTAGATTTTGAGCCCGAAGACTAGGCC
AGGCTGGGCCTGGGCCTGCTGTTTCTGCCATTTACTGAAGAGGCCCGGCCCGGTGTGTTTTTTGTTGTGCCGGGCCGGGC
TTGGGCCTGAAAAGTAGTCCCGATGGCTGGGCTGGGCCAGGCTCGGGCCTGAGTTTTCTACCTCGGGCTTGGTCAGGCCC
GGCCCGAAGGATGGCCAGGTCTAATTGGCCACCATGGTTTCCTCATGGTCGGGCCGACAACACGACTTGTTCGACCATGA
GGGAGTTATGCCGGTCACCAGCGAAAATAATAATAATAATATGATATTAAAACTATCTCCGCTGCACAGTCATGTACCAC
TAATATTTTTTCCCCTCCTGATTTTGCAACAGAAAATCCAAAGGGCAGTAATCTGCGCCGGTGCATCGGCTTAAACTTTC
GGCCGGTCCGACCTTGACCGTCAGATGTGATGCATAGAAACCGTTCAGATTGAAGCGTCTCGTCCCCACTTCCGCATCCC
TCGCACGCAAGACTCTCTCTTTCCCACCTTATCGCTAGTCAACGCAGACGCCCACAAACGCACTGTCCCAGGCCGCCGCT
CGTCCCTGGAACAAGACGCCATCCATGGCGCCGCTCGCTTCCCCTGCTACTGCATCTGCCCCCAACTCGAATCGCCGACG
AGCCTACTCGCAGCGTTGCTCGAAGTCTTGGGGAAAAATCCCCCTCGTAGCAGCAGATCCACCCGCAGCGCGTACATCCA
CCTCTGCTAGCCGCAGGGTGACGCTTCGCCGACGAGGCTACTCGCAGCGGCAACGCCGCACGTCGTCTCTGGCGCCGGTG
GGTGCCGCTTGCAACATGTCGTGCTACTCGTCTCCATCATTTGCATGTGCTGGATCCAGCAAAAATCATCGCCGGTTGTA
GCATTCACCATCACTGTTGTAGCAAAATCAAAGGACGGGCGGACACAGACAGATAAACTCCGATGGTTGGTTCAACAAAT
TCCAACGCCGTTTTCAGCAAAACTTGTCACTGATTGTAGCAAACAAAGCAAATAAATTGTCGCAACAAAGATCACAACTT
ACGCGGATTCCCCAACAAATTCAGACAAGGGTTCCAGCAAAAGTTGTAGCCGGTTCCAGCAAAAATTGTAGTCGGTTCCA
GCAGAAATCCGATGAATGTCGCAGAAAAGATCACAACTTACGCAGGTTCCACAACAAATTCAGACAACGGTTCCAGCAAA
AGTTGTAGCTGGTTCTAGCAAAAATTGTAGCGGGTTACAGCAAAAATCTGATGAATGTCACAGAAAAGATCAACACTTAC
GCGGGTTCTCAAGCAAATTTAGACAACGGTTCCAGCAAATTTCGTTGCCGGTTCCAGCAAATTTCAGCAAAAATTGTAGC
TAGTTCCAGCAAAAAGGTAGCAGCATAATAATGACAGCATGTGCGTGATCGTCAGCAAAATAATACACTAATTCCAGCAA
AAATCATTGCCGGTCCCAGCAAACAATCTGGCTGGTTGAAGCAGAGGTACTGGCTGGGCATGAAAGGAGAGCGTGCCTCA
TCTTCCTGGCCATAGCCCACAGCCGCCGGCGCCCCTGCTTCCAACAACGCCTCGAGGGCATTCCTTCCGGCAAGACGGAA
CCGCCAGCAGACCCATGCATCAACCGCCGGGGTGCGGGGGAGTGTGTGACGCCCTCTGTACATGCGGCAGCTAGAGGGCA
GCTTCGAAGCAGGAGAAGGGGAGAGATGCTTGCATCAATGGGGGAGGAAGGTCTCACGGCAGTAGGCGGTCTGGCCGTCA
ACGACGGCAAGCTCCGCATGAAGTGATGAGGGGGCAGGCATTGGGCGCCATGGCAAGAGCAGAAAAAAGAAAGCAACAGA
GGAGAAGAATAGAGATGAGAGGATAAGGGATGGGTGGTTGGCCTACTAGCAGCAACAGGAAACCGAGTGCACGCGTGCGA
CCGGCTGAAGCTTCGGCCGGCGCCCCGGCGTGAAACGTTTACGCCATAGAAGATGATGTACTCCTACACTTGTAAACCTT
GAAGGCGACGTAGCTGAAACACGCTCCACGGAACAGAAGACCCCAAGGCATTCGACCGTTGCCCCC-AAATTAAGCGCCA
AGCC-AACGGTCACCCGTACGCAGTCACGCGCTCACGGCAGCAGCACACTCCACAAGCTTCCAGCCCCAGCCGCCTTCTT
CCGCACCATCTTTCTCCTCCGCCGCTTCCCCCATCCATGTCCCCCGTGCATATAAAACTCCC-ATCCCCACGCGGCTTCC
CCTCCCAGCGCAGAGCACCCGCAGCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGTCCAGGCAG-TAAGCAGTCAAGCTCAAG
CATCCGGGCGGGA---------------------------GGAGGAG----AATGGGGTTCGTGCTGGTGATCTCGCTGC
CCTTCATATTCTTCACCGTCCTGCTCGGCTTCGGCTGCTACTTCCTCGGCAAGCACAAGGGCCGCGAGGAGATGCGCGCC
GGCGTCGGCGCACAGATCTACGGCACGCCGCTGCCGCCGCCCGGTGTCGCCGGACAGTCCCCGGGGCCGTACCCGGCCCC
GGTCCCGGTGAAGAAGGAGGGCCCCGACGCCGTCTGATCGA------------------------TGGAGCGTTGGTGTT
GTT-GTTTATTGGGTTTGGTTGATTATTACCGGGTGGTGTGGTGTGTCCCCGTGTACATGGAGTAGTAATTTGTTGCTCG
TTTCTTGTGAGGTGTTCACTGTGAAGGAGGACGGGATGGTGATCTGGTGTGTGATGATTTGTGATCACAGTTGCGTTTCT
ATGAGATGTGCAAATCGATGTAATGAAT------------ACTGTATTAGTTTGTGAT----AATCAACCGTTGCTTGGT
ATGTATGCAAAATTTGCTTTCTCGGGCTTGAGC-------TGATTGGAATTGGGTTTCTGATGTGATGGAAGAGTTTCAG
GTGTCAAAAGTCAAGCAAAAGGAGGAGTATAGATTCAGGAAAACTAGATAGAGTTGG---------GCCCCCAAAAACTC
CTTGAAGAATGGTTTTCGATGCAAGGCGAACTGG-------------ACACCAAATATGGCACTTGCAGCAACTCACTGA
TTTTGCACATTTCTTCCTCAAATGTTCCAAAAATGATAGCACCAGGCGATGG---------------------------A
AAGCGGACAGTATCTTTTTGGTTTCCAGAAACCGGGCTGAGTTCTTCAGATATTTTTGCTGCTAACAGTAATAATATCTC
TCATGGTGATTGCTACAGTATATCTTTAGGGAGTACCTAGAACTCATCTAAATGAGATATAGTTTGGTCTCATTCACTTT
GAAAACAAGAATAGATACAGCCCATGTTAGGACACACGCATCTTATAGCATCACATCCAATGGTTATAAAAGGTGAATGA
GACCAAATTATATCTCATCTAGATGAGTTCTAGCAAAACTGATATCTTTATGGTAATTGTATGGA---------------
---GATTGCACATATTTTGATTTTTCCCTCTGGT------ACATGCACAAGCAAAAACCAACACAACTCTCATGGTAATA
ATACCATGATAATTTTGTAAACACAGTTCATCTTTTTAATTATAATAAGTGTAAATCCATGATGTTGTTTGGTTTC----
--------------------CGATTGCAATCAGCTAACCACTTCTGAAGACTTGTCTTGGTTTGCAATTTCCTTTTATCA
GGCTTGCATCTGAAGCTGCATGGAATCGGGTTTGTCAAGAGTTTTCAGGTGTAAAGGGCAATCAAAAGGAGGAGAATAGA
TTCAGGAACTAGAG--TTGAGCTGGCACTATCCCTTCTAAAATACA-----------
>chr5A_935
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--------------------------------------------------------------TAATCAGTCAAGCTCAAG
CATCCAAGCCAGCCTTGGATTGAAGGCGTCCATCCGGGAGGGAGGGAGGGCAATGGGGTTCGTGCTGGTGATCTCGCTGC
CCTTCATATTCTTCACCATCCTGCTCGGCTTCGGCTGCTACTTCCTCGGCAAGCACAAGGGCCGCGAGGAGATGCGCGCC
GGCGTCGGGGCCCAGATCTACGGCACGCCCCTGCCGCCGCCCGGCGTCGCCGGGCAGTCCCCGGGGCCGTACCCGGCACC
GC------TGAAGAAGGAAGGCCCCGACGCCGTCTGATCGGTCGAGCTCCCTCCTCCTCCTTAGCTGGAGCGTTGGTGTT
GTTTGTTTACTGGGTTTGGTTAT-A------------------------CCGTGTACATGGAGTA---ATTTGTTGCTCG
TTTCTTGTGTGATGCTTACTGTGAAGGGTG-------GTTGATCCG--GTGTGATGATTTGTGATCACAGTTGCGTCTCT
ATGAGATGCGCAAATCGATGTAATGAATTACTATATGAATA-----TTAGTTTGTGATAATCAATCAACCGTTGCTTGGT
TTGTATGCAAATCTTGCTTTCTCAGGCTTGCGTCTGAAGGTGAGTGGAATTGGGTTTCTGATGTGATGGAGGAGTTTCGG
GTGTCAAAAGTCAAGCAAAAGGAGGAGTACAGATTCAGGAA--CTAGATAGAGTTGAGATGGCACTGCCCCCGAAAGTTC
CTTGAATAATGGTTTTCGATGCAAGGCGAATTGG-------------GCACCAAATCTGGCACTTG---CAACTCACTGA
TTTTGCACATTTCTTCCCCAAATGTTCCAGAAAT---AGCACCAGGTGATGG---------------------------A
AAGCTGACAGTATCTTTTTGGTTTCCAGAAACGGGGCTGAATTCTTCAGATGTTTTTGCTGCTAGCAGTAATACTCATAA
GGAAGAAGATAGTAACGTGCAGAACTATATCAATGTATGAGGATCAAATGGAGGCAAAC---------------------
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-----------------------------------------ATATCTTTATGGTAATTGTATG-------GAGAGGGGAT
GGTGATTGCACATATTTTGATTTTGCCCTCTGGTTCTGGTACAAGCACAAACAAAAATCAACACATCA-TCATGGG----
---------------------CACAGTTCATCTTTTTAATTACAGCAAGTGCAAATCTATGGTGGAA--TGGTTTC----
--------------------CGATTGCAATCAGCTAACCACTC---------TGTCTTGGTTTGCAATTTCCTTTTGCCA
GGCTTGCATCTGAAGCTGCATGGAATCGGGCTTGTCAAGAGTTTTCAGGTGTAAAGGGCAAGCAAAAGGAGGAGAATAGA
TTCAGGAACTAGAGAGTTGAGCTGGCACTGTCTCTTCTAC--TAAATACACCTGGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S-S---SS------------S-SSS-S
-----------------------------------S------S--------------S----------------------
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----------------------------------------S---------S------------S--SS---------SS-
-S----S--S----S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
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-----------S------------------------------------------------------S---------S---
S---S-----------S---------------------------------------------------------------
--S---S---S-------------------S-----------------S-------S-S---S-----------------
-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
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-------------------------------------------------------------S------------------
---------------S-----------S----------------------------------------------------
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-----------------------------------------S-----S----------------------------S---
-------S----------------------------------------S------------SS-----------------
------------------S---------------------------------------------S---------------
-------------------------------S------------------------------------------------
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----------S----------------------------S----S--------------------S--------------
---------------------------------------------S------------S-----------S---------
-----------S---------------S-S----SSSSSSSSSSSSS---------------------------------
------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
----------S-----------------------------------SS--------------------------------
--------------------S-------------------S---------------------------------------
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-----------------------------------------------------------------SSSSS----------
S------------S---------------S---------------------------------------------S----
-----S-------------------S-----S---------S---------------------------------SSSSS
SSSSSSSSSSSSSSSSSSSS-------------------------S----SS-S--------------------S-----
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----------------------------S-----------S----------S-----
>forward_2519
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-------------------CGCAGCAATTCGATCCCAAG-----------------------------------------
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>reverse_3998
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-----------------------------------------------------------------------------GAA
AAGCTGACAGCATGGGC---------------------------------------------------------------
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