>input_sequence_86548
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-------ATGATGGCCTCGTCGGGGCAGCGCGCGGTGGCTCTCGCCGCGCTCGTGGTCGTCGTTCTGGTCGCCGGAGCAG
GCCCTGCTGGCGGGGCGCGGCAGATGCCGGTGGAGAGGAGCGGGGACGGCGCG---------------------GCGG--
-------------CAACGGTGGTGGTGGCGGAGAAGGCTACGGAGACGGTGGAGATGCTCATGGCGAGGCTGCCGGCCGG
GCCCAGCAACAGGGGCGCCGGCCACTAG----------------------------------------------------
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>chr5D_1_TraesCS5D01G307700
TAAAAGATGGGGCAAGGCGCAGCGGCCACGTAGAGCCCCATCTGTCCCGGTTCATATAAGAACTGGAACTAAAGGTATTG
GACTTTAGTACCGACCCTTTAATCCCGGTTCCTGAACCGGGACAAATGAGCCTTATGAACCGGGACAAATTGGCTTTTTT
CTATTAGTGTATACTTCTGAGGCTTGAGGGCCCAGGGTTGATGTGAACAGCGGGCGGGTCGTCCAGGAGACATGGTGTCG
AGAACCTAGAGCAACTCTATCCGATTCCTCATATCAGGTCGTTCGGCATAATAGCTGTCGAGGCGATGATTTTAGTCGAG
AAGATCGGAGTCGCGGTACATCCTTCGCCTGCATAATTTATAAAGCGCGCTCCGGATTGAGCCAACAAGCCTCCATATCT
AAAGGTTGGGGGGCGTTGATATGGTGCGGCCTTCATTACAGCCGCTCACGTGGAAGTGAAGTTTCAACCTGACTTCTTCT
TCTTGCCGTCTGTACGGACTGGCGTAATCAATCGGTCGGCTCTGTTGCC--TTTTTTTAAGAATTTGGGTTCGTATT---
---TGAGTTCAGGTTCTCCCGGTTGCT-AAATAACACCGACGGCGG--CCGTCAGATTCGCTCGCCCCGCTTCACGGTTC
ACGGTCGCTACCGAGGT-CATCTTCTTCACGAATCGAATCCCAGCTGTGAGAGCTAGCGTCAGTTTTGCTACTTGGTGAT
TCTACACTACACGCCCAGCTGTGG--------CTGTGAGACCCATCGGCTGGAAATGGCTAGCGGCACCTGCCGGCTGCC
ACGTCTTGACTTGCCGGCCCAAGGAAGGAACGGTGGC--------------------CGTCATTTTCCATGACCTCAGCT
CAGCTCCTTTCCATTCACCATCTCCATTCCTCTACACGTCAAGCTCACCGATCCGCCATCACCAGG--------CCGCAA
CCTCCATAAATACCCCTGTGCGCACAAACTACTA--GTACACTACTCACGC-----------------------------
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------------------------------------------------ACACCACCTTGAACTATTCTCGTCAGCTCTGT
TCTGTGCATGATGGCCTCGTCGGGGCAGCGCGCGGTGGCTCTCGCCGCGCTCGTGGTCGTCGTTCTGGTCGCCGGAGCAG
GCCCTGCTGGCGGGGCGCGGCAGATGCCGGTGGAGAGGAGCGGGGACGGCGCG---------------------GCGG--
-------------CAACGGTGGTGGTGGCGGAGAAGGCTACGGAGACGGTGGAGATGCTCATGGCGAGGCTGCCGGCCGG
GCCCAGCAACAGGGGCGCCGGCCACTAGCTACGTACGTAGGTCGCCCTCGACGGACAGCTTG--------GATCGGCT--
-----TGCAAGGTTTTGTAGACGCGTA---CACGGA--GAAATGATGTGAATT---AGTTCAGTGAGTCCATAGGCGCCC
TTCACGTCG---TACTAACTGCATG-TGGAATGACTCCTTGTTATCTTCTTTCCCTTTCTTTCTCATTGGAAATTGTTAG
TGCGATGTATGAAAAGAT---------------------------TGTACAGCTATGACCT-----AGAGTGGTGCACGC
ACTTGTAATAACGTGTTTTCTCGCTGAAACGCATTAGTAATCCGAGCTGTGATTCTTTTCAAATTTGTTTGAACTTACTA
GAGCTGTGATTAGTTTTTCTTTACAAAGTGCTGTCTAATTTCCTCCCGTTTTCACGAAAACAAGAGCACACTGGCACTGC
ACAGTTGATATACGAGTATTTTTCTCCAAACCGCAGGGCCCGGGCGTGTGTTTTTTAGATTAAAAAAAGGTTAAACTAGT
AAGAATTTTGGTGTCATTCACATGTTATTGGCCATAGAAACACGCTTGTGCCAACAGGAAAGAAATGGATAAAAGAATGT
TAAACTAGTAGGAATTTTGGTGTCATTCACCATTTATGCTCGGTGAACTTGTCTAGTTGCATAACTGGCAAGCCCAAAAG
AATGTTTGAGGACACCTCGTGCCGGACCGAATTTGTCAGTGAGGTCACTTGCACGATGTTCTCCCGTACGTGACAACGAC
GAGAGCAATTGATCTTGAGAGCTGAGATCAATGGTTGTCCTATATCTCATACATCCATGACCGAAACTAAACTTATAGCT
AGCTACTGTATGTGTTCATCGTGTTATGTATCTTTTTGATGCTCCATTTTAAGTCGATAAATAACACCTTTTGTCGGAAA
A-AAAGCTAGCTACTCGCGTTGCAGCATTCGACGATGGGAACACGTGAAAAGTAAAGGTGTTTCTCAACGAGAC-----A
CCGAAGGCATGCATGCAGGCTCCCGGAACTTTCGTTGTCCTAGTTGAGCTACC
>chr5A_405
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----GTTGGGTGGCGTTGATACGAAGCGGCCTTCATCTGCAACC------TGGAAGGCAAGTTTCAACCTGACCTCTTCT
TCTTGCCGTCCGGACGGACTGGAGTAATCAATCGGTCGGCTCTGTTGCCCTTTTTTAGG-GACTTTGGGTTCGTATATAT
ATCTGAGTTCAGGTTCTCCCGTTGGCT-AAATAACACCGACCGCGG--CCGTCAGATTCGCTCGCCCCGCTTCACGGTTC
ACGGTCACTAGCGAGGCCCATCTTCTTCACGAATCGAATCCCAGCTGCGAGAGCTAGCGTCAGTTTTTCCACTTGGTGAT
TCTACACTACACGCCCAGCTGTGAGCCTGTGACTGTGAGACCCATCTGCTGGAAATAGCTAGCGGCACCTGCCGGCTGCC
ACGTCTTGATTTGCCGGCCCAAGGAAGGAACGGTGGC--------------------CGTCATTTTCCATGACCTCAGCT
CAGCTCCTTTCCATTCACCATCTCCATTCCTCTACACGTCAAGCTCACCGATCCGCCATCACCAGGCCGGCTGGCCGCAA
CCTCCATAAATACCCCTGTGCGCACAAACTACTATAGTACACTACTCACGC-----------------------------
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------------------------------------------------ACACCATCTTGAACTATTCTCGTCAGCTCTGC
TCTGTGCATGATGGCCTCGTCGGGGCAGCGCGCGGTGGCTCTCGCGGCGCTCGTGGTCGTCGTTCTGGTCGCCCGAGCAG
GCCCTGCTGGCGCGGCGCGGCAGATGCCGGTGGAGAGGAGCGGGGACCGCGCGGCGTTCTCGGCCCTCTACCCGGCGG--
-------------CGACGGTGGTGGCGG------------CGGAGAAGGTGGAGATGCTCATGGCGAGGCTGCGGGCAGG
GCCCAGCAAGAGGGGCGCCGGCCACTAGCTGCGTACGTAGGTCGCCCTCGACGGACAGCTTG--------GATCGGCATG
CCGCATGCAAGGTTTTGTAGACACGTA---CAC-GA--GAAATGATGTGAATTACTGGTTTAGTGAGTCCATAGGCCCC-
-TCACATCGTACTACTAACTGCATG-TAGAATGACTCCTTGTTATCTTCTTTTCCTTTCTTTC-----------------
-----------------T---------------------------TGTACAGGTAAGACCT-----AGAGTGGTGCACGC
GCTTGTAA---CGTGTTTTCTCGCTGAAACGCATTAGCAATTCGAGCTGTGATTCTTTCTCAATTGGTTTGAACTTACTC
GAGCT---------------------------------------------------------------------------
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--------------------------------------------------GTCTAGTTGCGCAACTGGCAATCTCAAAAA
AATGTTTGAGAACACCTCGTGCCGGGCCGAATTTGTCAGTGCTCC-----------------------CGTGACAACGAC
GAGAGCAATTGATCTTGAGAGCTGAGATCAATGGTCGTCCTATATCTCGTACATCCATGACCGAAACAAAACTTATAGCT
AGCTACCATATGTGCTCATTGACTTATGTATCTTTTTAATGCTCCATTTTAAGCCAATAAGAAACACCTTTTGTCAAAAA
AGAAAACTAGCTACTGGCGTTGCAGCATTCCACGATGGGAACGTGTGAAAAGTAAAGGTGTTTCTCAACGAGACGAGACA
CCGAAGGCAC----GCGGGCTCCCGGAACTTTCGTTGTCTGACTTGAGGTACC
>chr5B_459
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----------------------------------------------------------AAGTTTCAACCTGACCTCTTCT
TCTTGCCGTCCGTACGGACTGGAGTAATCAACCGGTCGACTCTGTTGCC--TTTCTAGC-GACTTTGGGTTCGTATAT--
--CTGAGTTCGGGTTCTTCCGCTGGCTAAAATAACACCGACCGCGCGCCCGTCAGATTCGCTCGCCC-GCTTCAGGGTCA
CCACTCACCACCGAGGT-CGTCTCCTTCACGAATCGAATCCCAGCTGTGAGAGCTAGCGTCAGTTTTGCTACTTGGTGAT
TCTACACTACACGCCCAGCTGTGAGCCTGTGACTGTGAGACCCATCGGCTGGAAATGGCTAGCGGCGCCTGCCGGCTGCC
ACGTCTTGACTTGCAGGCCCAAGGAGGGAACGGTGGCGCTGGTCTGTGCGGGCCGCACGTCATTTTCCATGACCTCAGCT
CACCTCCTTTCCATTCACCATCTCCATTCTTCTACACGTCAAGCTCACCGATCCGCCATCACCAGA--------CCGCAA
CCTCTATAAATACCCCTGTAGCACACAC------TAGTACACTACTCGTGTTAGAAATAAGCCATGCGTTCATGTGCGTG
CGTGCGTTGTGTGTGCTTGTGGCATGCGTGTGTGTCGCTGGGTAGGCGTGAGAGCCGGAGCTAGCTAGCCAGGCCGAACT
TGGTGGCTGCTAGGTGTGGTTGTTAGCGCATGCATGCACTGGTAGTTAGCTGGTTAGCCGGCCTGGAGTTAGTGGCCGGT
AGTGGTGGCCGTGTGGTGCGTGCGTGGGGGTCTGTATGCTTGGCCGCTGCGTTACCTGAGTATAAAGGCCAGGCGATGTA
GTACGAGAGCCGTGGTGCTCTGGGAACGAGTTCGTGCTCGTGGGTGTTGGCGTTTGAGCGCCGGAAACCTCCTGTGTCCA
CCTGTGTCTTCTTCTTTCCTTCTTCTTCTACCTCGGTCTGCAGCAGAACAAGAGAGCTGTGAGAGGTAGGCGAGAGCTAG
GGCTAGTCGGCAACAACAATTGGTATCAGAGCATCGGGTTCGGAGGAGCTCGCCGGTGATGGCGCTCGTCCCGTGCGGCG
GCGGAGCACGGTGACGCCGTGCGTGCGGGGAGCGCGGCGGACCTGCGCGGTGGCGCAGAGGCTGCGGTGGCGCGGCGCGG
CTCGGCGGAGGGAGGGCCAAGCTCCGGGACACGCCGGATCGGCCGCGTTGCTCGCGTCGGAGCGCGATCATGGCGCGGGC
TGGTGGCGGGCGGAGCGTGGCAGAATAAGCCGCGGCGACGGGCTCACCGCCTCGGACGCGTGTATGGGCGCGCGCCAGAC
GTAGCGGGCACGTCGGGATCGCGGGTGCGGACCACGTCGGGGCGCTGGACCCGGTTGCGCAGATCGCGTATGTGCGCGGC
GGGACCGCGGGCCGGGAGCGCGGGGACATGGGGAGTGCGCGCGAAAGGCACGGCGGTCGCGGAGACGAGGAGGTCGCGAA
GGACCTGCGTGGTGGCGCAAAGATCGCGACGGCTCGGGGCGACAACCGTGGAAGGTGCGTGACACGTAGGCGCGGCGTGG
CGGCTGCCATGGCGGACGCGGAGGCGGCACGCGGTGAGCGTCTGGTGCTGTCGGGCTCGTCGGGCGCGACGGATGCGCGC
GGGACGTGCGGGACGCACTGGTGCGATCGGGCTCGTCGGGCGCGTTGGGTGCGCGCGGGACGTGCGGGGCGCAGAGGGAC
GCCAGGCGTGTGTCGCCGGCGGAGAAGGAGCTCGGCGTATGTTGCCGGAGTCATGATGGAGCACGGTGCAACCGGCGTCG
TTGCGGCAGGTCGGGTCCGCGGGCTGGGTCACGACTATGACGACGACAATAACAGGAGCTGCAACAACTTCGACGACGGC
GAGATCATGGCTTAGGAGGAGAATGTTAGAAATAAGTCATGCGTTCATGTGCGTGCGTGCGTTGTGTGTGCTTGTGGCAT
GCGTGTGTGTCGCTGGGTAGGCGTGAGAGCCGGAGCTAGCTAGCCAGGCCGAACTTGGTGGCTGCTAGGTGTGGTTGTTA
GCGCATGCATGCACTGGTAGTTAGCTGGTTAGCCGGCCTGGAGTTAGTGGCCGGTAGTGGTGGCCGTGTGGTGCGTGCGT
GGGGGTCTGTATGCTTGGCCGCTGCGTTACCTGAGTATAAAGGCCAGGCGATGTAGTACGAGAGCCGTGGTGCTCTGGGA
ACGAGTTCGTGCTCGTGGGTGTTGGCGTTTGAGCGCCGGAAACCTCCTGTGTCCACCTGTGTCTTCTTCTTTCCTTCTTC
TTCTACCTCGGTCTGCAGCAGAACAAGAGAGCTGTGAGAGGTAGGCGAGAGCTAGGGCTAGTCGGCAACAACAACTCGCA
CGCACCGCCTACCTTTCCTTCAGAGATCCGGCGCTAAACTACACGTCTACACCGCCTTGAACTATTCTCGTCAGCTCTGT
TCTGTGCATGATGGCATCGTCGGGGCAGCGGCCGGTGGCACTCGCGGCGCTCGTTGTCGTCGTTCTGTTCGCCGGAGCAG
GCCTTGCTGGCGCGGCGCGGCCGATGCCGGTGGAGAGGAGCAGGGACGACCCG---------------------GCA---
---------GCGACGGTGGTGGTGGTGGCGGAGAAAGCTTCGGAGACGGTGGAGATGCTCATGGCGAGGCTGCCGGCCGG
GCCCAGCAACAGGGGCGCCGGCCACTAGCTGCGTACGTAGGTCGCCCTCGACGGACTGCTTG--------GATCGGCT--
-----TGCAAGGTTTTGTAGACACGTAGTACACGGA--GAAATGATCTGAATT---GGTTTAGTGAGTCCATAGGCCCT-
-TCACTTCGTACCA----ACTGCAG-TAGAATGACTCCTTGTAATCTCCCCTCCTTTTCTTCGCCAG-------------
-----------------------TGGAAATTGTTAGTACGAAGACTGTACAAGTATGACCT-----AGACTGGTGCACGC
ACTTGCAATA---TGTTTTCTCCCTGAAAC------GTAATTCGAGCCGTGATTATTTTCCAATTTGTTTGAACTTGACT
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>chr5A_962
ACACCA--------------------------------------------------------------------------
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-------------------------------------------------------CTTGATCGATCCTCGCCA-----GC
TGTGTGCATGATGGCATCGTCGGGGCGGCACACGGTGGCTCTCGCCGTGCTCGTGGTCTTCGTTCTGGTCGCCGGGGCGG
GCCTTGTTGGCGAGGCGCGGCCGGAGCCGGTGGGGAGGAGCGGGCGCGGCTCG---------------------GCGGTG
TACCCTGCGGCGTCGATGGTGGTGGTCACGGAGAAAGCGAGGGAGACAGTGGGGATGCTCATGCCGAGGCTGCCGGCCGG
TCCCAGCAACAGGGGCGCCGGCCACTAGCTACGTACGTCGC-------CGGCGGACAGCTTCGATCGGTTGATCGGCT--
-----TGCAAGGCTCTGTAGACACGTAT---GTACACGGAGATGGTGTGAGTTAA----TTAGTGGGTAGGGTTGCCCT-
-TCACGTCGTAATGATTGATTGAAGATACAATGACTCTTTGATATCCTCCTTCCGTTTCCTTC-----------------
-----------------TCTCGTTGGAAGTTATTACTACGAAGATTATACAAGTATGATGACCTAGAGCGGTGCGCACGA
ACTTGTAATG---TATTTTCTCGCTGAAACACATTAGCAAATCGAGTTGTGATTCCTTTTCA------------------
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>chr5B_962
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------------------------------------------------ACACCACCTTGATCGATCCTCGCCA-----GC
TCTGTGCATGATGGCATCGTCGGGGCGGCGCATGGTGGCTCTCGCGGTGCTCGCGGTCGTCGTTCTGGTCGCCGGGGCGG
GCCTCGTTAGCGAGGCGCGGCCCGAGCCGGCGGAGAGGAGCGGGGACGTCTCG---------------------GCGGTG
TACCCGGT------GACGGTGGTGGGGGTGGACAAGGCGAGGGAGACGGTGGGGATGCTCATGCCGAGGCTGCCGGCCGA
TCCCAGCAACAGGGGCGCCGGCCACTAGCTACGTACGTCGC-------CGGCAGACGGCTTGGATCGGTTGATCGGCT--
-----TGCAAGGTTTCGTAGACACGTA---CACAGTGGGTA-----------------------GGGTTCATAGCCCCT-
-TCACGTCGTAATA----ATTGAAGATAGAATGACTCTTTGATATCCTCCTTCCTTTTCCTTT-----------------
-----------------TCTCGTTGGAAATTATTACTATGAAGATTATACAAGTATGATGACCTAGAGCGGTGCACACGC
ACTTGTAATG---CATTCTCTCGCTGAAACACATTAGTAAATCGAGTTGTGATTCCTTTTCA------------------
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>chr5D_994
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TCTGTGCATGATGGCATCGTCGGGGCGGCGCACGGTGGCTCTCGCCGTGCTCGCGGTCGTCGTTCTGGTCGCCGGGGCGG
GCCTCGTTGGCGAGGCGCGGCCCGAGCCGGCGGAGAGGAGCGGGGACGTCTCG---------------------GCGGTG
TACCCGGT------GACGGTGGTGGGGGCGGACAAGGCGAGGGAGACGGTGGGGATGCTCATGCCGAGGCTGCCGGCCGG
TCCCAGCAACAGGGGCGCCGGCCACTAGCTACGTACGTCGC-------CGGCGGGCAGCTTGGATCGGTTGATCGGTT--
-----TGCAAGGCTTTGTAGACACGTAGTACGTACACGCAGATGGTGTGCGTTATTAA-TTCGTGAGTTCATATGCCCT-
-TCACGTCGTACTA----ATTGAAGATAGAATGGCTCTTTGATATCCTCCTTCCTTTTCCTTT-----------------
-----------------TCTCGTTGGAAATTATTAGTACAAAGATTATACAAGTATGATGACCTAG-GCGGTGCACACGA
ACTTGTAAGTA-----TTTCTCGCTGAAACGCATTAGTAATTCGAGCTGTGATTCCTTTC--------------------
-----------AGTTCTTCTTTGAA-------------------------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------S----------S-SS-----------SSSSSS-SSSSSSS------SS---------------S------
----------S-----------S---------------------------------SSSS--S-------------S---
---------------------S-S-----------------S--------------------------------------
------S-------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
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------------S-------------------------------------------------------------------
--------------S-----------------------------------------------------------------
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----------------------S-------------------------------------S---------------S--S
S--------------------------S-----------------------------------S--SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS-----------------------------------S---------------------------
-----------------------------------------S------------------S------------------S
-----SSSSSS----S------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS---------S-S-----S
----------S--------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----------------------------------S------------S------------------S------------
------SS------S----S-SS--------------S---------------S-S----SS-------------SS---
-----S---------S--------------S-----------SS------------------------------------
---------SSSSS--S----------------------SS-S-----S----
>forward_377
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-------------------------------------TTATAAAGCGCGCTCCGGAT-----------------------
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>reverse_3899
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----------------------------------------------------------TTCTCCCGTACGTGACAACG--
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