>input_sequence_86544
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----ATGGGGTTCGTGCTGGTGATCTCGCTGCCCTTCATATTCTTCACCGTCCTGCTCGGCTTCGGCTGCTACTTCCTCG
GCAAGCACAAGGGCCGCGAGGAGATGCGCGCCGGCGTCGGCGCACAGATCTACGGCACGCCGCTGCCGCCGCCCGGTGTC
GCCGGACAGTCCCCGGGGCCGTACCCGGCCCCGGTCCCGGTGAAGAAGGAGGGCCCCGACGCCGTCTGA-----------
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>chr5B_1_TraesCS5B01G418400
GGAAACCGAGTGCACGCGTGCGACCGGCTGAAGCTTCGGCCGGCGCCCCGGCGTGAAACGTTTACGCCATAGAAGATGAT
GTACTCCTACACTTGTAAACCTTGAAGGCGACGTAGCTGAA-ACACGCTCCACGGAACAGAAGACCCCAAGGCATTCGAC
CGTTGCCCC-CAAATTAAGCGCCAAGCC-AACGGTCACCCGTACGCA----GTCACGCGCTCACGGCAGCAGCACACTCC
ACAAGCTTCCAGCC----CCAGCCGCCTTCTTCCGCACCATCTTTCTCCTCCGCCGCTTCCCCCATCCATGTCCCCCGTG
CATATAAAACTCCC-ATCCCCACGCGGCTTCCCCTCCCAGCGCAGAGCACCCGCAGCAATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NACGTCCAGGCAG-TAAGCAGTCAAGCTCAAGCATCCGGGCGGGA---------------------------GGAGGAG-
---AATGGGGTTCGTGCTGGTGATCTCGCTGCCCTTCATATTCTTCACCGTCCTGCTCGGCTTCGGCTGCTACTTCCTCG
GCAAGCACAAGGGCCGCGAGGAGATGCGCGCCGGCGTCGGCGCACAGATCTACGGCACGCCGCTGCCGCCGCCCGGTGTC
GCCGGACAGTCCCCGGGGCCGTACCCGGCCCCGGTCCCGGTGAAGAAGGAGGGCCCCGACGCCGTCTGATCGA-------
-----------------TGGAGCGTTGGTGTTGT-TGTTTATTGGGTTTGGTTGATTATTACCGGGTGGTGTGGTGTGTC
CCCGTGTACATGGAGTAGTAATTTGTTGCTCGTTTCTTGTGAGGTGTTCACTGTGAAGGAGGACGGGATGGTGATCTGGT
GTGTGATGATTTGTGATCACAGTTGCGTTTCTATGAGATGTGCAAATCGATGTAATGAAT------------ACTGTATT
AGTTTGTGAT----AATCAACCGTTGCTTGGTATGTATGC-AAAATTTGCTTTCTCGGGCTTGAGC-------TGATTGG
AATTGGGTTTCTGATGTGATGGAAGAGTTTCAGGTGTCAAAAGTCAAGCAAAAGGAGGAGTATAGATTCAGGAAAACTAG
ATAGAGTTGG---------GCCCCCAAAAACTCCTTGAAGAATGGTTTTCGATGCAAGGCGAACTGG-------------
ACACCAAATATGGCACTTGCAGCAACTCACTGATTTTGCACATTTCTTCCTCAAATGTTCCAAAAATGATAGCACCAGGC
GATGGAAAGCGGACAGTATCTTTTTGGTTTCCAGAAACCGGGCTGAGTTCTTCAGATATTTTTGCTGCTAACAGTAATAA
TATCTCTCATGGTGATTGCTACAGTATATCTTTAGGGAGTACCTAGAACTCATCTAAATGAGATATAGTTTGGTCTCATT
CACTTTGAAAACAAGAATAGATACAGCCCATGTTAGGACACACGCATCTTATAGCATCACATCCAATGGTTATAAAAGGT
GAATGAGACCAAATTATATCTCATCTAGATGAGTTCTAGCAAAACTGATATCTTTATGGTAATTGTATGGAGA-------
----TTGCACATATTTTGATTTTTCCCTCTGGT------ACATGCACAAGCAAAAACCAACACAACTCTCATGGTAATAA
TACCATGATAATTTTGTAAACACAGTTCATCTTTTTAATTATAATAAGTGTAAATCCATGATGTTGTTTGGTTTCCGATT
GCAATCAGCTAACCACTTCTGAAGACTTGTCTTGGTT
>chr5D_103
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----------------------TGAAGGCGACGTGGCTGAA-ACACGCTCCACGGAACAGAAGACCCCAAGGCATTCGAC
CGTTGCCCCCCAAATTAAGCACCAGGCCAAACGGTCACCCATACGCA----GTCACGCGCTCACGGCAGCA---CACTCC
ACAAGCTTCCAGCC----CCAGCCGCCTTCTTCCACACGATCCTTCTCCTCCGCCGCTTCCCTCATCCATGTCCCCCGTG
TATATAAACCCCCCAATCCCCACGCGGCTTCCCCTCCCAGCGCAGAGCACC-GCAGCAATTCGATCCCAAGCATCCCCCC
ACCAACCTCACCATCCTCGTACCGC-------------------------------------------------------
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-ACGTCCAGGCAGCTAATCAGTCAAGCTCAAGCATCCAAGCCGGCCTCGGATTGAAGGCATCCATCCGGGAGGGAGGGG-
---AATGGGGTTCGTGCTGGTGATCTCGCTGCCCTTCATATTCTTCACCATCCTGCTCGGCTTCGGCTGCTACTTCCTCG
GCAAGCACAAGGGCCGCGAGGAGATGCGCGCCGGCGTCGGCGCCCAGATCTACGGCACGCCGCTGCCGCCGCCTGGCGTG
GCCGGGCAGTCCCCGGGGCCGTACCCGGTCCCGGTCCCGATGAAGAAGGAGGGCCCCGACGCCGTCTGATCGGTCGAGCT
TCCTCCTCCTCCTCGGCTGGAGCGTTGGTGTTGTTTGTTTACTGGGTTTGATTATTA-----------------------
-CCGTGTACATGGAGTC---ATTTGTTGCTCGTTTCTTGTGTGGTGTTTACTGTGAAGGAGGAAGGGATGTTGATCCG--
GTGTGATGATTTGTGATCACAGTTGCGTTTCTATGAGATGCGCAAATCGATGTAATGAAT------------A-----TT
AGTTTGTGATAATCAATCAACCGTTGCTTGGTTTGTATGC-AAT-TTTGCTTTCTCAGGCTTGCGTCTGAAGCTGAGCGG
AATTGGGTTTCTGATGTGGTGGAAGAGTTTCAGGTGTCAAAAGTCAAGCAAAAGGAGGAGTACAGATTCAGGAA--CTTG
ATAGAGTTGAGCTGGCACTGCCCGCAAAAGTTCCTTGAAGAATGCTTTTCGATGCAAGGCCAGTTGGATAAATAAATAAA
ACACCAAAT--------------------CTGATTTTGCACATTTCTTCCCCAAATGTTCCAAAAAT---AGCACCAGG-
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>chr5A_107
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--------------------------GGCGACGTGGCCAAACACACGCTCCACGGAACAGAAGGCCCCAAGGCATTCGAC
CGTTGCCCC-CAAATTAAGCACCAAGCC-AACGGTCACCCGTACGTACGCCGTCACGCGCTCACGGCAGCA---CACTCA
ACAAGCTTCCAGCTCCCTCCAGCCGCCTTCTTCCACACCATCCTTCGCCTCTGCAGC----------------CCCTGTG
CATATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNA-----------------------------------------------------------------------------
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--------------TAATCAGTCAAGCTCAAGCATCCAAGCCAGCCTTGGATTGAAGGCGTCCATCCGGGAGGGAGGGAG
GGCAATGGGGTTCGTGCTGGTGATCTCGCTGCCCTTCATATTCTTCACCATCCTGCTCGGCTTCGGCTGCTACTTCCTCG
GCAAGCACAAGGGCCGCGAGGAGATGCGCGCCGGCGTCGGGGCCCAGATCTACGGCACGCCCCTGCCGCCGCCCGGCGTC
GCCGGGCAGTCCCCGGGGCCGTACCCGGCACCGC------TGAAGAAGGAAGGCCCCGACGCCGTCTGATCGGTCGAGCT
CCCTCCTCCTCCTTAGCTGGAGCGTTGGTGTTGTTTGTTTACTGGGTTTGGTTAT-A-----------------------
-CCGTGTACATGGAGTA---ATTTGTTGCTCGTTTCTTGTGTGATGCTTACTGTGAAGGGTG-------GTTGATCCG--
GTGTGATGATTTGTGATCACAGTTGCGTCTCTATGAGATGCGCAAATCGATGTAATGAATTACTATATGAATA-----TT
AGTTTGTGATAATCAATCAACCGTTGCTTGGTTTGTATGCAAAT-CTTGCTTTCTCAGGCTTGCGTCTGAAGGTGAGTGG
AATTGGGTTTCTGATGTGATGGAGGAGTTTCGGGTGTCAAAAGTCAAGCAAAAGGAGGAGTACAGATTCAGGAA--CTAG
ATAGAGTTGAGATGGCACTGCCCCCGAAAGTTCCTTGAATAATGGTTTTCGATGCAAGGCGAATTGG-------------
GCACCAAATCTGGCACTTG---CAACTCACTGATTTTGCACATTTCTTCCCCAAATGTTCCAGAAAT---AGCACCAGGT
GATGGAAAGCTGACAGTATCTTTTTGGTTTCCAGAAACGGGGCTGAATTCTTCAGATGTTTTTGCTGCTAGCAGTAATAC
TCATAAGGAAGAAGATAGTAACGTGCAGAACTATATCAATGTATGAGGATCAAATGGAGGCAAAC---------------
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-----------------------------------------------ATATCTTTATGGTAATTGTATGGAGAGGGGATG
GTGATTGCACATATTTTGATTTTGCCCTCTGGTTCTGGTACAAGCACAAACAAAAATCAACACATCATCATGGG------
--------------------CACAGTTCATCTTTTTAATTACAGCAAGTGCAAATCTATGGTGGAA--TGGTTTCCGATT
GCAATCAGCTAACCACTCTG-----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS------------S---------------------------------------------
--------------------S--------------------------------------------------SSS------
----------------------------------S-------S-------------------S-----------------
--------S-S----------------------------------------S----------------------------
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--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----------------S-------------------SS--S--S--------------------------------S--
-------------------------------------------------S------------------------------
-------------------------------------------S--------------------------------S---
-----S---------------------------------S--------------------------------S-------
-----------------------------------------S-----------SS-SSSSSSSSSSSSSSSSSSSSSSSS
S----------------SSS---------------------S------S--------------S------S-----S-SS
----------------------------------------S--------------------------------SSSSS--
--------------------------------S----------SS-----------S------S-S----------S---
--------------------------------------------------------------S-----------SS----
---------S-------------------SS--------------------------------S----------------
---------S---------SSS----------------------------S----------------SSS---------S
----------S---------------------------S-------S----------S------------S--------S
-SSSSSSS-S-SS---S-SS--SSSSSSSSS-SSSSS-S-SSS-SSSSS---SS-SS-S-SS-SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
-----------------------S------------------S------S------S-------S-SSSSSS--SSSSSS
SSSSSSSSSSSSSSSSSSSS---------------------S-SS-----S-----S---S--SSSSS------------
-----------------SSSSSSSSSSSSSSSSSSSS
>forward_999
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-------------------AGTCAAGCTCAAGCATCCGG-----------------------------------------
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>reverse_2025
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------------------------AGCCCATGTTAGGACACACG------------------------------------
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