>input_sequence_86542
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--------ATGATAACTCAAGGTTGGGCAGCGGCGGCTGTGGTAGCAAATG------------GTGGTGGTGGTAGACGG
GGAGATGAGAAGAAGGCGGCTCCAGGGTGCGACTTGGAGGCATTGCGCAAGTGCCTGGAAGAGAACAAGGGTGATGGCGC
CAAGTGCCAGGCTCACATTGACGCCTTCCGATCCTCATGTTCTGTCAGCCCCACCAACACCTCCGACTACCGTCCCACCG
TATGA---------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G275100
TAAATAAAATTATCAGGGATTTATGATTGATGGTAATCTTTACTGAAGATGGGTTTACAAGCACAGCAGCAGCGAGTTTC
TTCCAGACAATGATCTCAACTGGATACATATGCACAATTACGAATATTTGTTAATGTAAGTGTACATCATACCAATGCAG
ATTAAGCTACTCGTGATGTCTAGAAAGCCCACCATAACTCAGTTTGTGCTTACTTCCTGTGTAACTGTGTAAATGTTAAA
ATCTGCTGTCAGACTCGTCTAACCTTTAACATCTTCCTGAATGAGATAAAAACTTAACATCAAGATTTTTAAACTTTTAA
TGGTCTTCAGTCTTTTCTGCCATTAAGACACAATGGAGTTTTAGAAGTTGGATTAGATGAGATTTTCAACATAAAGAGTA
CAAACTAGTGGATAAGCAGATAAAATGGCATGATGTACTCCCTCCGTTCTACTTCCTCCATTCCTAAATATAAGTCTTTT
TAGACATTTCAAATGGAATA------------------------------------------------------------
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------------------CAACATACGGATGTATGTAGACATATTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGT
AGTCACTTGGTGGAATCTCTAGAAA-------------------------------------------------------
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--------------------------------------------------------------------------GACTTA
TATTTGGGGACGGAGGGAGTAAATTATAAGATGTTTTGGATATTTCAATATGGACTACATACGGACTGAAATGAGTGAAC
AAACACACTAAAATGCATCTATATACATCCGAATCAGAATTGTTTTTGAACATCTTATAATTAGGACGAGGGAGCAGCGA
CCTTCTATTTTGTGTCTTTATTAGTCAAATTCTTGATCAGGGGTCAGATTTTAGTGCATATGCATTCCAGATCGTTTGCT
CCATCAGGGATAACCATAGATTAAGGCAGATGCATGTTGGTTACTG-AGAGACCCAGAGGAGCAACTTCTGAATCTTAAA
TATGCCAAAAGTACATTCAACATTTAAATAATTGTGTTTACCTTTTGATTATCACAGGGTGGGTACAGACTGGTCCTTCT
GATCCGTGATGATAACTCAAGGTTGGGCAGCGGCGGCTGTGGTAGCAAATG------------GTGGTGGTGGTAGACGG
GGAGATGAGAAGAAGGCGGCTCCAGGGTGCGACTTGGAGGCATTGCGCAAGTGCCTGGAAGAGAACAAGGGTGATGGCGC
CAAGTGCCAGGCTCACATTGACGCCTTCCGATCCTCATGTTCTGTCAGCCCCACCAACACCTCCGACTACCGTCCCACCG
TATGATCTTCCACTTCTTCGCTCCCAATCAAAAAAAAAATT-CACC--AACTTTTACCCATGGATATATTAAGTAAATTC
TTCCTACCATGTCTGCAATTCTGGTTAATTTAAATGATCATATAGT-------TTGATAGGGCCTTATCTGATCCGCTAT
TTTAAACAAATGAAATTTTGTTCAAGTTGAAAGGCAAAGACAGATT-ATCTGAAACTTGATGTAGAGCA-----------
--------TGACAGTGTTAGGTTAGTCATCACTCCGAGGTCTTCTAGACAAACGGAGCAGCTGCTTTGGAGAGACATTAG
TACAGAATAAATCCGATAAACATATACGGAGTAGTA--------TACATATGGACAAAGAAACCATGTCATCT-GT-AAC
TTCTAAACACTTTCTCTGAACCGGTTGGTAGAGTTACAAGGGCAATTATAGGACTGAAACATG-TGCTATTTTGTTGGTG
CAGGTACAAAAGGAGACCTGAAACAC--TGGTGTCTTTGCTGGGGTGGTTTTACAAGAAACCTTGTGGAATAATTAG---
---------GATGAGGTGCGACTGTGCAAATGCTCATGTGCAAGATAGGATAATTAGGACTTAGACTAGCAGTTTTTTTT
TGAGAAAATTATACTTTTCATCCCTCAATTCTTCGCGAAGTTTAGATTTGGTCCCTCAACTCCAAAACCGGACAACTTGC
ATCCTTAACTACTGAAATCGGACAAAATTCATCCCTGGTCACGGTTTTGACCGGTTTTGGTGCTGTCACACCCCGCTTTT
GACCGTGCCGACTCAAATTCGTCTACCTTTTCCAATTCCGCTTAATGTTTTCAAATTCGGGTACTTTTTCCAAATCCGCG
CACTTTTTCCAAGTTCACGTACTTTTTTAAATCCACGTGCGTTTTTAAAGTTCATGTGGTTTTTTCAAATTCATGTATTT
TTTTAAAATTGACGTACTTATTCATATTCGCGTACATTTTTTTGGATTTGAAAGTTTTATGCAAACTTGAAAACGTACGT
GGATTCGAATTTCTTTTATG
>chr5B_1
TAAAT-AAATTATCAGGGGTTTATGATTGATGGTAATGTTTCCTGAAGATGGC-TTACAAGCACAGCAGCAACGAGTTTC
TTCCAGACAATGATCTCAACTGGATACATATGCAAAATTATGGATAT---------------------------------
---------------CTGTCTAGAAAGCCTACCATAAATCAGTTTCTCCTTACTTCCCGTGTAAGTGTGTAAATGTTAAA
ATCTGTCTTCATACTCGTCTAATCTTTAACATCTTCCTGCATGAGATAAAAACTTAACATCAAGATTTTTAAACTTTTAA
TGGTCTTCAGTCTATTCTGCTGTTAAGACACAATG----------------------------------------GAGTA
CAAAGTAGTGGATAAGCAGATGAAATGGCATATGAT--------------------------------------------
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------------------GT------------------------------------------------------------
---------------------------------------------------------------------------AGTGA
CTATCTATTTCGTGTCTTTATTAGTCG-------------------------------TATGTATCCCCGATCGTTTGCT
CCATCAGGGATAACCATAAACTAAAGCAGATGCATGTTGGTTACTGAAGAGACCCAGAGGAGCAACTTCTGAATCTTAAG
TATGCCAAAAGTACATTCAACATTTAAATAATTGTGTTTACCTTTTGATTACCACAGGGTGGGTACAGACCGGTCCTTCT
GACTCGTGATGATAACTCAAGGTTGGGCAGCGGCGGCTGTGGTAGCAAACG------------GTGGTGGCGGCACAAGA
GGAGATGAGAAGAAGGCGGCTCCAGGGTGTGACGTGGAGGCACTGCGCAAGTGCCTGGAAGAGAACAAGGGTGATCGCGT
CAAGTGCCAGGCCCACATCGACGCCTTCCGATCCTCATGTTCTGTCAGCCCCACCGCCACCTCCAACCAACGTCCCAGCG
TATGATCTTCCACTTCTTCGCTCCCAATCAAAATAAATTTTCCACC--AACTTTTCCCCATGGATTTATTAAGTAAATTC
TTCCTACCCTGTCTGCAACTCTGGTTAATTCACATGCTCATATAGATATAAGATTGATAGGGCC--ATCTGATCCACTAT
TTTCAACAAATGAAATTTTGTTCAAGTTGAAAGCCA-----------------------------AGCATGACACTGTTG
CTGCTTGCTGGTAGTGTTAGCTTAGCCATCACTCCAAGGTCTTCTAGAGAAATGGAGCAGCTGCTTTGGAGAGACATTAA
TATA-AGTAAATCTGATAAATATACTATACATATTGATAGATCCTACATACAGAGAAAGAAACCATGACATCT-GTAAAC
TTCTAAAGACTTTCTCTGAATCGGTTGGTATAGTTTTAAGGGTAAT--TATGACTGAAACATGGTGCTGTTTTGTTGGTG
CAGGTACAAAAGGAGGCCTGAAACAC--TGGAGTTCTTGCTGGGGTGGTTTTACAAAAAACCTTGTGGAATAATTATGAT
GAATGGTGCGA----------CTGCACGAATGGTCATGTGAAAGATAGTATAATTAGGACTTAGACTAGCAGTTTTCTTT
TT------------------------------------------------------------------------------
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>chr5D_142
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-------------------------------------------------------------GTACATCATACCAATGCAG
ATTACCCTACTCGTACTGTCTATAAAGCCTAGCATAAATCAGTTTCTCCTTACTTCCTGTGTAAGTGTGTAAATGTTAAA
ATCTGTTGTCACACTTGTCTAATC-TTAACATCTTCCTGCATGAGGTAAAAA--------CAAGATTTTTAAACTTTTAA
TGGTCTTCAGTCTATTCTGCTGTTAAGACACAATG----------------------------------------GAGTA
CAAAC--GTGGATAAGCAGATGAAAGGGCATACTAT---------GATGTACCCCCTCTGTTCCGAAATGTAAGTCGTTT
AAGGGTTTGACGTGTAAATTTCGTAACGCTACGAGAATTTTTCACTTTCCAGAAATGCCCTCCCACCACCGCTCGCTCTC
ACCCACTCGAGCTCACTCTCTCGTTCCCCTCTCACCCACCCGGCCACCCCTCTCTCGCTCCCCTCCAGATCCCCGTCGTC
GCCGGCCTCTCCTCGCCATCGTCACCGCTGAGCCACCCCGCTTCCTCTCTTTCTCCGCACCACCGAGCCACCCCGTTTCC
TCCCACCGCCAGAAATCCACCACCCGTAGGTCAAAACCTTGATTTTTTAGGCGCCGGCGATGAGCTTCTGGCCGGCGGAG
GCGCTGGATCCGCGTGCTTCGACGCCGGCGACGAAGCGACATGGATCCGGGTGGGATGCTGCTGGAGGACTTCGGGCTGT
GGGTGGACCTGGTGCGGCGCATCCGCGAGGTGCTGGCCAACTACCCGGAGGGCACCACCGCGCTGCGGGACGCCGGGAGC
TCATCCAGAACGCCGACGATGCCGGGGCCTCGTGCGTCCGCCTCTGCCTCGACCGCCGCGCCCATGGGTCCCGCTCGCTG
CTCGCCCCCGCGCTTGCACAGTGTACGCCAGCAACGACGCCGCCTTCACCGACGAAGAGTTCGCCAGCATCCCCCGCATC
GGCGGCCGCAAGAAGTCCTCCCAGGCCTGGAAGACCGGCAGCAAGATGGGCGCTAGCTACACTCTCTATCGCTGCCGAGC
TCTGCTTCGAGCTGCTGCTCTTTCAATTTGAGCTGCGCTAGCTAAGCTCTTTCAATCTCAACCAGTACGTGTTCATTTTC
TACTCGTACGAATGTTGCTGCTGTTTTGTGTTGTCACCTACGAATGCTGCTGCTAATTTGAGTTCTACTGTTAATTTGAG
AACAATATGCTTAGCAAGGACCCACTGTTAATTTGGAGTAGCAACTGTACTCCATTGAAGTACTGTTACTGTTAATTTGC
AAACTGAATTTGGAGTAGCAGCATACTGAATTTTGTATACTGAATTTGGAGTAGCAATTTGGAGTATGAAGCAGCTGTAT
GGATTACTGTTAATTTTGCATACTGAATTTGAGTAAAATGGAGTAGCTCTGTCACTGAATTTGGTTGGTAAAGATGCAGT
AGCAGTAGGAGTTTTTACTGCACCTAACTAAGGTAGCTGCTGGGGTTAATTAGTTACCGCGCCTAATTAATTATCATGTG
TAATCTGAACTGGTGTGTGTACCAAGTGATGATGGTTCTTAAGTTTAGCATGCATCACCAAGTTAATTGGGCGCCTAATT
GCCAACTCTTGTGTCAGGAACATATATTCATAATGGAATAAAAACAACTTGCCAAGTTCTTTTGTGACTGGAACATATTC
AGAATGGAATAAAAACAACTTGCCAAGTTCTTTTGTGACTGGAACATATTCAGAATTTATTTCTACTCCAGTTCAGTTGC
TTAATTTTCTTGGAGTACATTTGCTTAATTTGCTTGGAGTACATTTAACTTGGAGTACTTCAATACTCCAAGATTTGCTT
AATTTGTGAACTGGAGTAGTTTTCAGAATGGAATGAAAACTAATGGCAGTACATTTGCTTAATTCGCTTTGAGTACATTT
AACTTGGAGTCCTCTGGTACTCCAAGATTTGCTACTCAAACAAATTTTGAGTACTTGCACTTGCACACAACACTACTCAG
CAATTTTCAATTAATTTTCTTGGATTACTCCATCTTGCTCTGTTAGGTTATCTTGCATTTTCTGTTAATTACTCCATCTT
GGATACTTGGAGCACTGATGATGATTGCTGCTGTTATGTTAGGACTTGCAAGCAGTAGTTTTAGTACTTTAGTGTAGGAC
TTGCAACAAGAGGAGAGCTACTGTAGTATACTCCTCTTGTGCCCTCCATATTCTTGATCTCTTCTTTTCTCTTCTCTCTT
CTACAGTAAATATGAGCCCTACAATAATATGATTTGTGACCTTGAATGTTTTTTTCCATCAGATTGTTTTAAAGAAGGGC
TAATGAAAAAAGATGTGTGAGGGTATCAGTCATTCTCATGCCGGCATGCTGCACTTTTCAGCTAGCAGGTTGGTATCTCA
ACATTTCTCCATTCAAGTCATTTCCCATAGTGTTTTTTCGAAGCACTAACTGCAGATTTGCATACTAAGAATGGCTGGAG
TATTTTATTTACATCAAATTATGTCAAACAGTTTAGATTGTTCAGTCATACCATAGTGTTTAAAAGTTTGGACATTCTGA
AGATTCAAATAAAAATAGACATGTGCACAGTTTACTTGATCATGTCAAGTTCAGGTGAAAGTGACCCTCTTATGGGAATA
ATGAAGTACAGAAATGAGATCGAGTTCAAAGTAAGGCTGGGGTAAAATTTTCAAAGGCCATGATCTACTCCTTCCTGATA
TTCATGCTCCTGATATTCCTACTCCTATTCCTACTCAATTTTACCTTAAATGAGAGTAGCAATTATTTCTGCCCATTAAT
TCATACTCCTACTGATTTGGAGTACTGATGAAACTAAGTCCAAACCTGTTCTAAATTGACAGTACGTGTTCATCTTTTCT
ATTGACAGTACCGGTCCAAACCTGTTCTAAATTGACAGTACTTGTTCATCTTTTCTATTGACAGTACCGGTCCAAACCTG
TATTGATAGTACATGTTCTACTCAGTGTTCATCTTTCACTGTTCAATATCACTGTTCAGTTTCAGTGTTAAATTTCAGTA
TTACTCCAAGATTGTACTGCATGCAATTATTCAAGACAAATGATTACAACAAGTTTATGATCATCAAATTGTTTACTCAG
ATGCAGAGCGAGTACTGGGCGAGGAGATGAACCTAGGCGAGCAAAATTGAGAACTCCGGCTGGAGCAGCTCCTGTCCAGC
GGCGAGGACTTCAGCGGCAGCAGCACCTGTGCGTGGGGAGGAACAGCACCTGGGCGCGTGCAGGCGGCAGCTCGCCTCCA
ACAGTGGGCGGCAGCAGAGCACCAGCTCGCCACCACCAGGGGCCGGCAGCAGAGCACCAGCTCGCCTCCACCAGCGGGCG
GCAGCAGAGCACCACCTGGGCACGCGCGGGCCAGGAGGGGCCCCTGGGCGTGGGAGAGGAGGAGCGCCTGGGCAGGGGTG
GAGGTGGAGGGCGGGGGAGGAGGCGGAGGTGGAAGGCGGGGATGGAGGCGGAGGTGGAAGACGCCGAGGAAGAAGACGGG
CTGATTCAAATTTTGAACTGGGGGCATAAAGGTCCATTTGCCCATTTTCACCTGGTCGGAACATATTCCCCAGCGACTTA
CATTTCGGAACGGAGGGAGT------------------------------------------------------------
---------------------------------------------------------------------------AGTGA
CTATCTATTTCATATCTTTATTAGTCA-------------------------------TATGTATCCCCGATCGTTTGCT
CCATCAGGGATAACCATAAAATAAAGCAGATGCATGTTGGTTATTGAAGAGACCCAGAGGAGCAACTTCTGAATCTTAAA
TATGCCAAAAGCACATTCAACATTTAAATAATTGTGTTTACCTTTTGATTACCACAGGGTGGGTACAGACTGGTCCTTCT
GACCCGTGATGATAACTCAAGGTTGGGCAGCGGCGGCTGTGGTAGCAAACG------------GTGGTGGCGGCAGAAGG
GGAGATGAGAAGAAGGCGGCTCCAGGGTGCGACGTGGAGGCACTGCGCAAGTGCCTGGAAGAGAACAAGGGTGATCGCGT
CAAGTGCCAGGCCCACATCGATGCCTTCCGATCCTCATGTTCTGTCAGCCCCACCACCACCTCCGACCAACGTCCCAGCG
TATGATCCTCCACTTCTTCGCTCCCAATCAAAATAATTTGTCCACC--AACTTTTGCCCATGGATTTATTAAGTAAATTC
TTCCTACCCTGTCTGCAACTCTGGTTAATTTACATGTTCATATAGATATAAGATTGATAGGGCCTTATCAGATCCACTAT
TTTCAACAAATGAAATTTTGTTCAAGTTGAAAGCCAAACATGACTG----------------------------------
----TTGCTGATAGTGTTAGGTTAGTCATCACTCCAAGGTCTCCTAGAGAAATGGAGCAGCTGCTTTGGAGAGGCATTAA
TATA-AATAAATCTGATAAACATACTATACATATTGATAGATCCTACATACAGAGAAAGAAACCATGTCATCT-GTAGAC
TTCTAAACACTTTCTCTGAACCGGTTGGTATAGTTTTAAGGGCAAT--TAGGACTGAAACATGGTGCTATTTTGTTGGTG
CAGGTACAAAAGGAGACCTGAAACAC--TGGTGTTGTTACTGGGGTGGTTTTACAAGAAACCTTGTGGAATAATTAG---
---------GA----------CTGCGCAAATGGTCATGTGAAAGATAGGATAATTAGGATTTAGACTAGCAGTTTTTTT-
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>chr5A_888
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-------------------------------------------------------AGAGGAGCAACT--TGAATCTTAAG
TATGCCAAAATTACATTCCACATTTACATAATTGTGTTTACCTTTTGATTATTACATGATGGGTACAGACTGTTCCTTTT
GACCCGTGCT------TCAAGGTTGAGTAGCGGCGGCTCTGGCAGCGATGGACAGAACAAGCAGTGGAGGTGTCAGAGGG
GAAGGTGAGAAGAAGGCGGCTGCAGCATGCGACGTGGAGGCGCTGCGCAAGTGCCTGCAGGAGAACAAGGGTGATCGTGT
CAAGTGCCAGGCTCACATCGATGCCTTCCGATCCTCATGTTCTGTCAGCCCCACCACTACCTCCGATGGCCATCCTGCTG
TATGATCTTCCACTTCTTGCTCCCAAATCAGAATAATTTCTTTTCACTAACTTTTACCCATGTATTAATTAAGTAAATCC
TTCCTACCCAGATTGACCCAGATTAACA--------------------------------GGTCTTATCTGATACACTAT
TTTAAACAAATGAAATTTTCTTCAAGTTAAAAGGCAAACATGGACTCATCTGAAACTTGATTTAGAGCATGACACCGTTG
TTTTC-------AGTGTTAGATTAGTCATCACTCCGAGGTCTTCGAGACAAACGAAATAGCTGCTTTGGGAAGACATCAG
TATC-AATAAAGCCGATAAACATAGTATGCATGCAGATAGATCCTACATACAGGAAAACAAATCATGTTATCTTGT-AAC
TTCTAAACACACTCTCTGAACCAGTTGGTAGAGTTTCAAGTGCAAT--TAGGACTGAAACATGATGCTATTTTTCTGGTG
CAGGTAAAAAAGGGGATGTGAAACACAATGGTTCTGTTGCTGGTGTAGTTTTACAAGAAAC-------------------
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>SNPs
-----S------------S------------------S---S----------SS-----------------S--------
----------------------------------S-----S-S----SSSSSSSSSSSSSS-------------------
----SS--------SS-------------S-------S-------S-S----------------S---------------
-----S-----S----------S----------------S----------------------------------------
-------------S------SS-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
---------------------S---------SS-S-SSSSSSSSS-S-S---SS----SS----S----S------S---
S--SSS--SSSSSSSS---S------------------------------------------------------------
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--------------------S-----S--SS-S----S--SS-S---S----SSSS---SSSSSSS-SSSSSSSS-S-S-
S-SSSSS--S-SSSS-SS-SSSSSS-------------------------------------------------------
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S----S--S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--
-SS-------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--S--S-----------
------------------S-S---S-------------------------------------------------------
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--S----------------------------------------------S-----------------------S---S--
---------------------------------S--------S--------------------------------S---S
------------------S-------------------------------------S----------S------------
---------------------------------S---SS--------------------------S--------------
--------S---------S-------------S---S--------S-----------------------------S----
--------------------------------------S-SS-------------------S------------------
-----------S--------------------------------------------------------------------
--S-S-------------------SSSS-SS--S-S--------------SS--S-------------------------
-----------------------------------S----------SS--------------------------------
----------------------------------SS--------------------------------------------
-----------SSSSSSSSSS---S-------S-------S---------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_3781
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-ATTTGGGGACGGAGGGAGTA-----------------------------------------------------------
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>reverse_5092
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---------------------------------------------------TCCCTCAACTCCAAAACCGG---------
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